Wall clock time and date at job start Tue Mar 31 2020 20:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47293 * 2 1 4 4 C 1.50697 * 109.47175 * 120.00652 * 2 1 3 5 5 N 1.30499 * 125.64913 * 300.17079 * 4 2 1 6 6 C 1.34130 * 109.25655 * 180.29703 * 5 4 2 7 7 C 1.34670 * 108.01887 * 359.72431 * 6 5 4 8 8 N 1.35048 * 125.65414 * 119.99975 * 4 2 1 9 9 C 1.46497 * 126.39330 * 359.97319 * 8 4 2 10 10 C 1.50706 * 109.47337 * 84.71527 * 9 8 4 11 11 O 1.21281 * 119.99714 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99986 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99641 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46974 * 324.99780 * 13 12 10 15 15 C 1.52996 * 109.47032 * 85.00544 * 13 12 10 16 16 C 1.53001 * 109.47264 * 59.99870 * 15 13 12 17 17 C 1.52997 * 109.46925 * 59.99873 * 16 15 13 18 18 C 1.52996 * 109.47389 * 299.99590 * 17 16 15 19 19 H 1.08999 * 109.47454 * 300.00556 * 18 17 16 20 20 N 1.46499 * 109.47169 * 180.02562 * 18 17 16 21 21 C 1.36931 * 120.00122 * 85.00412 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 C 1.53005 * 109.46896 * 205.00496 * 13 12 10 30 30 H 1.09003 * 109.46676 * 299.99613 * 1 2 3 31 31 H 1.08996 * 109.47403 * 59.99673 * 1 2 3 32 32 H 1.08998 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47119 * 240.00151 * 2 1 3 34 34 H 1.09003 * 109.47471 * 300.00226 * 3 2 1 35 35 H 1.09003 * 109.46943 * 60.00551 * 3 2 1 36 36 H 1.09005 * 109.47360 * 180.02562 * 3 2 1 37 37 H 1.07999 * 125.98983 * 179.72768 * 6 5 4 38 38 H 1.07998 * 126.58805 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.47602 * 324.71520 * 9 8 4 40 40 H 1.09006 * 109.46977 * 204.71387 * 9 8 4 41 41 H 0.97000 * 119.99738 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.47079 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46772 * 299.99592 * 15 13 12 44 44 H 1.08995 * 109.47084 * 180.02562 * 16 15 13 45 45 H 1.08999 * 109.46935 * 299.99919 * 16 15 13 46 46 H 1.09001 * 109.46971 * 180.02562 * 17 16 15 47 47 H 1.08999 * 109.47276 * 60.00256 * 17 16 15 48 48 H 0.97001 * 119.99790 * 264.99929 * 20 18 17 49 49 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.47117 * 180.02562 * 29 13 12 51 51 H 1.09002 * 109.47054 * 59.99578 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7834 -0.3641 2.4636 6 6 2.3970 -1.2187 3.2956 7 6 3.0460 -2.1328 2.5496 8 7 2.8120 -1.8132 1.2394 9 6 3.3180 -2.5296 0.0660 10 6 4.5861 -1.8729 -0.4153 11 8 5.0244 -0.9023 0.1650 12 7 5.2338 -2.3648 -1.4900 13 6 6.4669 -1.7267 -1.9576 14 1 6.3989 -0.6496 -1.8051 15 6 7.6570 -2.2793 -1.1708 16 6 7.7523 -3.7912 -1.3849 17 6 7.9452 -4.0842 -2.8741 18 6 6.7550 -3.5317 -3.6609 19 1 5.8375 -4.0065 -3.3131 20 7 6.9394 -3.8128 -5.0868 21 6 6.5514 -5.0206 -5.6024 22 1 6.1090 -5.7658 -4.9579 23 6 6.7266 -5.2871 -6.9534 24 7 7.2653 -4.3787 -7.7389 25 14 6.1902 -6.9318 -7.6581 26 1 7.3184 -7.8944 -7.5822 27 1 5.0405 -7.4539 -6.8766 28 1 5.7853 -6.7545 -9.0758 29 6 6.6597 -2.0197 -3.4469 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8901 36 1 3.1300 1.4424 -0.0005 37 1 2.3745 -1.1804 4.3747 38 1 3.6372 -2.9595 2.9148 39 1 2.5707 -2.5015 -0.7271 40 1 3.5246 -3.5658 0.3341 41 1 4.8834 -3.1413 -1.9539 42 1 8.5745 -1.8048 -1.5189 43 1 7.5196 -2.0705 -0.1098 44 1 8.5999 -4.1849 -0.8240 45 1 6.8348 -4.2659 -1.0370 46 1 8.0126 -5.1613 -3.0268 47 1 8.8626 -3.6094 -3.2220 48 1 7.3363 -3.1433 -5.6657 49 1 7.3874 -4.5648 -8.6831 50 1 7.5774 -1.5453 -3.7946 51 1 5.8118 -1.6261 -4.0074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981364695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:24 Heat of formation + Delta-G solvation = 18.362690 kcal Electronic energy + Delta-G solvation = -29649.550843 eV Core-core repulsion = 25777.445132 eV Total energy + Delta-G solvation = -3872.105711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.33154 -40.18745 -38.10366 -35.51271 -34.63221 -34.14806 -33.17896 -31.25909 -30.09351 -28.96740 -28.08812 -27.52096 -27.29717 -23.84434 -23.05774 -22.35726 -21.80999 -21.22319 -21.03268 -19.28076 -18.98107 -17.83739 -17.44159 -17.13196 -15.89063 -15.61910 -15.33650 -15.07025 -14.82658 -14.51264 -14.43229 -14.04632 -13.86569 -13.73438 -13.56660 -13.46819 -13.14578 -13.02398 -12.82929 -12.45735 -12.28611 -12.15387 -11.99419 -11.85208 -11.66862 -11.35242 -11.13453 -11.09384 -10.96112 -10.89578 -10.51812 -10.43251 -10.30042 -10.26696 -10.04082 -9.85471 -9.63191 -9.56076 -9.11706 -8.95721 -8.43322 -7.06828 -5.86450 -3.15959 1.83902 2.33960 2.43757 3.07460 3.14644 3.35646 3.40656 3.42938 4.18402 4.33455 4.39630 4.47905 4.51614 4.64924 4.86310 4.92345 4.96116 4.97820 5.05501 5.08205 5.35086 5.38440 5.46568 5.49939 5.52297 5.57800 5.63765 5.66549 5.71561 5.74322 5.79173 5.86129 5.94273 5.98325 6.02996 6.10491 6.14297 6.17202 6.20874 6.36877 6.44648 6.49709 6.60096 6.66540 6.82290 6.96317 6.99757 7.34609 7.58852 7.99306 8.02924 8.31706 9.43074 9.99944 10.34092 11.35962 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002627 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.539762 B =10656.977833 C =11303.368405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.138 4.138 4 C 0.229 3.771 5 N -0.488 5.488 6 C -0.029 4.029 7 C -0.052 4.052 8 N -0.440 5.440 9 C 0.080 3.920 10 C 0.495 3.505 11 O -0.524 6.524 12 N -0.712 5.712 13 C 0.153 3.847 14 H 0.084 0.916 15 C -0.127 4.127 16 C -0.114 4.114 17 C -0.138 4.138 18 C 0.182 3.818 19 H 0.040 0.960 20 N -0.724 5.724 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.282 1.282 28 H -0.291 1.291 29 C -0.134 4.134 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.405 0.595 42 H 0.071 0.929 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.077 0.923 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.691 5.498 17.342 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.196 4.196 4 C -0.033 4.033 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.184 4.184 8 N -0.122 5.122 9 C -0.047 4.047 10 C 0.278 3.722 11 O -0.399 6.399 12 N -0.365 5.365 13 C 0.049 3.951 14 H 0.102 0.898 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.071 3.929 19 H 0.058 0.942 20 N -0.365 5.365 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.208 1.208 28 H -0.217 1.217 29 C -0.172 4.172 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.185 0.815 38 H 0.189 0.811 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.241 0.759 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.876 6.618 17.831 20.989 hybrid contribution 0.540 -2.084 -1.063 2.401 sum -8.336 4.534 16.768 19.267 Atomic orbital electron populations 1.21790 0.93084 1.02068 1.02798 1.19538 0.96432 0.96160 0.90730 1.21752 1.01687 0.93830 1.02378 1.23153 0.96349 0.88189 0.95639 1.70170 1.24533 1.26935 0.98937 1.22204 1.01353 0.94575 0.99462 1.22611 1.08050 1.05164 0.82600 1.44837 1.38317 1.23253 1.05819 1.21726 0.96271 0.97647 0.89074 1.20619 0.85525 0.84833 0.81196 1.90772 1.67171 1.26198 1.55783 1.46161 1.26458 1.33650 1.30245 1.20987 0.82736 0.97362 0.94030 0.89767 1.21895 0.97966 0.96858 0.99864 1.21498 1.00854 0.95065 0.97840 1.22301 1.00815 1.01733 0.92965 1.20131 0.95033 0.91255 0.86434 0.94170 1.42417 1.74293 1.17195 1.02574 1.19191 1.33541 0.92471 0.92066 0.91255 1.24749 1.01635 0.98059 0.96369 1.69659 1.49596 1.33753 1.04894 0.86220 0.78149 0.83558 0.78406 1.21718 1.20773 1.21748 1.22142 1.03053 0.99014 0.93036 0.91322 0.91784 0.92828 0.90540 0.91989 0.91523 0.92189 0.81480 0.81146 0.86080 0.85881 0.75905 0.91020 0.92202 0.92811 0.92784 0.92025 0.92492 0.78218 0.93431 0.90397 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 2 C -0.01 -0.08 3.25 -91.78 -0.30 -0.38 16 3 C -0.14 -1.45 9.17 37.15 0.34 -1.11 16 4 C 0.23 2.82 6.39 -155.41 -0.99 1.83 16 5 N -0.49 -6.69 11.25 -10.82 -0.12 -6.81 16 6 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 7 C -0.05 -0.56 11.58 -16.56 -0.19 -0.75 16 8 N -0.44 -4.86 2.24 -115.19 -0.26 -5.11 16 9 C 0.08 0.67 6.16 -5.19 -0.03 0.64 16 10 C 0.49 5.61 7.86 -10.98 -0.09 5.52 16 11 O -0.52 -8.07 16.08 5.56 0.09 -7.98 16 12 N -0.71 -7.63 4.23 -53.80 -0.23 -7.86 16 13 C 0.15 1.90 2.78 -67.93 -0.19 1.71 16 14 H 0.08 1.12 7.58 -51.93 -0.39 0.73 16 15 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 16 C -0.11 -1.45 5.77 -26.73 -0.15 -1.60 16 17 C -0.14 -2.19 5.50 -26.73 -0.15 -2.34 16 18 C 0.18 3.09 2.60 -67.93 -0.18 2.91 16 19 H 0.04 0.66 6.44 -51.93 -0.33 0.33 16 20 N -0.72 -16.57 5.12 -53.43 -0.27 -16.84 16 21 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 22 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 25 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 C -0.13 -1.90 5.08 -26.72 -0.14 -2.04 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.71 6.85 -51.93 -0.36 0.35 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 39 H 0.12 0.76 7.30 -51.93 -0.38 0.38 16 40 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.40 3.88 6.87 -40.82 -0.28 3.60 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 46 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 49 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 407.76 15.07 6.14 6.14 Total: -1.00 -33.04 407.76 -10.04 -43.09 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.77 Total: 10.82 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -2.33 Total: -5.54 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.16 Total: -62.89 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.04 -10.04 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.449 kcal (2) G-P(sol) polarization free energy of solvation -33.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds