Wall clock time and date at job start Tue Mar 31 2020 20:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47293 * 2 1 4 4 C 1.50697 * 109.47175 * 120.00652 * 2 1 3 5 5 N 1.30499 * 125.64913 * 300.17079 * 4 2 1 6 6 C 1.34130 * 109.25655 * 180.29703 * 5 4 2 7 7 C 1.34670 * 108.01887 * 359.72431 * 6 5 4 8 8 N 1.35048 * 125.65414 * 119.99975 * 4 2 1 9 9 C 1.46497 * 126.39330 * 359.97319 * 8 4 2 10 10 C 1.50706 * 109.47337 * 84.71527 * 9 8 4 11 11 O 1.21281 * 119.99714 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99986 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99641 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.46974 * 324.99780 * 13 12 10 15 15 C 1.52996 * 109.47032 * 85.00544 * 13 12 10 16 16 C 1.53001 * 109.47264 * 59.99870 * 15 13 12 17 17 C 1.52997 * 109.46925 * 59.99873 * 16 15 13 18 18 C 1.52996 * 109.47389 * 299.99590 * 17 16 15 19 19 H 1.08999 * 109.47454 * 300.00556 * 18 17 16 20 20 N 1.46499 * 109.47169 * 180.02562 * 18 17 16 21 21 C 1.36931 * 120.00122 * 85.00412 * 20 18 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 18 23 23 C 1.38812 * 120.00429 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99535 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00187 * 180.27849 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71949 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72145 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72253 * 25 23 21 29 29 C 1.53005 * 109.46896 * 205.00496 * 13 12 10 30 30 H 1.09003 * 109.46676 * 299.99613 * 1 2 3 31 31 H 1.08996 * 109.47403 * 59.99673 * 1 2 3 32 32 H 1.08998 * 109.47060 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47119 * 240.00151 * 2 1 3 34 34 H 1.09003 * 109.47471 * 300.00226 * 3 2 1 35 35 H 1.09003 * 109.46943 * 60.00551 * 3 2 1 36 36 H 1.09005 * 109.47360 * 180.02562 * 3 2 1 37 37 H 1.07999 * 125.98983 * 179.72768 * 6 5 4 38 38 H 1.07998 * 126.58805 * 180.02562 * 7 6 5 39 39 H 1.09004 * 109.47602 * 324.71520 * 9 8 4 40 40 H 1.09006 * 109.46977 * 204.71387 * 9 8 4 41 41 H 0.97000 * 119.99738 * 0.02562 * 12 10 9 42 42 H 1.08999 * 109.47079 * 179.97438 * 15 13 12 43 43 H 1.09005 * 109.46772 * 299.99592 * 15 13 12 44 44 H 1.08995 * 109.47084 * 180.02562 * 16 15 13 45 45 H 1.08999 * 109.46935 * 299.99919 * 16 15 13 46 46 H 1.09001 * 109.46971 * 180.02562 * 17 16 15 47 47 H 1.08999 * 109.47276 * 60.00256 * 17 16 15 48 48 H 0.97001 * 119.99790 * 264.99929 * 20 18 17 49 49 H 0.97005 * 119.99717 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.47117 * 180.02562 * 29 13 12 51 51 H 1.09002 * 109.47054 * 59.99578 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7834 -0.3641 2.4636 6 6 2.3970 -1.2187 3.2956 7 6 3.0460 -2.1328 2.5496 8 7 2.8120 -1.8132 1.2394 9 6 3.3180 -2.5296 0.0660 10 6 4.5861 -1.8729 -0.4153 11 8 5.0244 -0.9023 0.1650 12 7 5.2338 -2.3648 -1.4900 13 6 6.4669 -1.7267 -1.9576 14 1 6.3989 -0.6496 -1.8051 15 6 7.6570 -2.2793 -1.1708 16 6 7.7523 -3.7912 -1.3849 17 6 7.9452 -4.0842 -2.8741 18 6 6.7550 -3.5317 -3.6609 19 1 5.8375 -4.0065 -3.3131 20 7 6.9394 -3.8128 -5.0868 21 6 6.5514 -5.0206 -5.6024 22 1 6.1090 -5.7658 -4.9579 23 6 6.7266 -5.2871 -6.9534 24 7 7.2653 -4.3787 -7.7389 25 14 6.1902 -6.9318 -7.6581 26 1 7.3184 -7.8944 -7.5822 27 1 5.0405 -7.4539 -6.8766 28 1 5.7853 -6.7545 -9.0758 29 6 6.6597 -2.0197 -3.4469 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9562 0.8901 36 1 3.1300 1.4424 -0.0005 37 1 2.3745 -1.1804 4.3747 38 1 3.6372 -2.9595 2.9148 39 1 2.5707 -2.5015 -0.7271 40 1 3.5246 -3.5658 0.3341 41 1 4.8834 -3.1413 -1.9539 42 1 8.5745 -1.8048 -1.5189 43 1 7.5196 -2.0705 -0.1098 44 1 8.5999 -4.1849 -0.8240 45 1 6.8348 -4.2659 -1.0370 46 1 8.0126 -5.1613 -3.0268 47 1 8.8626 -3.6094 -3.2220 48 1 7.3363 -3.1433 -5.6657 49 1 7.3874 -4.5648 -8.6831 50 1 7.5774 -1.5453 -3.7946 51 1 5.8118 -1.6261 -4.0074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981364695.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:22 Heat of formation + Delta-G solvation = -1.387978 kcal Electronic energy + Delta-G solvation = -29650.407297 eV Core-core repulsion = 25777.445132 eV Total energy + Delta-G solvation = -3872.962165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.14338 -41.19954 -39.25868 -36.27599 -36.16394 -34.98357 -34.44825 -32.91594 -31.19135 -29.81972 -29.55815 -28.38677 -28.05047 -25.67157 -23.88511 -23.44877 -22.82743 -22.37186 -21.97578 -20.15230 -20.11713 -19.17501 -18.56969 -18.18753 -16.98870 -16.63727 -16.51138 -16.11222 -15.98542 -15.70850 -15.26784 -15.23213 -15.08650 -14.84118 -14.68625 -14.53864 -14.26507 -13.96514 -13.80369 -13.58579 -13.29212 -13.11612 -13.02130 -13.01573 -12.89464 -12.76878 -12.40526 -12.22486 -12.13310 -12.04630 -11.94664 -11.90059 -11.59874 -11.47560 -11.38789 -11.00885 -10.90795 -10.82799 -10.44176 -10.08144 -9.25406 -8.96832 -7.91000 -5.18667 1.01501 1.48357 1.50028 1.50670 1.58612 1.69451 2.22096 2.28736 2.58485 3.42080 3.43005 3.56181 3.70264 3.72381 3.80850 3.87974 3.92582 4.08846 4.13930 4.20236 4.29420 4.31092 4.35387 4.35902 4.55552 4.60974 4.66163 4.71886 4.74405 4.79208 4.80664 4.90343 4.94417 4.94710 5.05476 5.10102 5.16879 5.23233 5.27451 5.32612 5.37057 5.42411 5.46339 5.52301 5.56795 5.66554 5.88130 6.18321 6.31281 6.48717 7.13308 7.19132 7.37662 8.14899 8.35932 9.32614 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014870 B = 0.002627 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.539762 B =10656.977833 C =11303.368405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.011 4.011 3 C -0.132 4.132 4 C 0.214 3.786 5 N -0.522 5.522 6 C -0.056 4.056 7 C -0.050 4.050 8 N -0.443 5.443 9 C 0.079 3.921 10 C 0.499 3.501 11 O -0.567 6.567 12 N -0.704 5.704 13 C 0.163 3.837 14 H 0.077 0.923 15 C -0.121 4.121 16 C -0.103 4.103 17 C -0.129 4.129 18 C 0.178 3.822 19 H 0.054 0.946 20 N -0.738 5.738 21 C -0.230 4.230 22 H 0.080 0.920 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.966 3.034 26 H -0.293 1.293 27 H -0.265 1.265 28 H -0.301 1.301 29 C -0.121 4.121 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.182 0.818 38 H 0.200 0.800 39 H 0.147 0.853 40 H 0.158 0.842 41 H 0.413 0.587 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.042 0.958 47 H 0.043 0.957 48 H 0.371 0.629 49 H 0.248 0.752 50 H 0.072 0.928 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 4.021 18.444 21.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.031 4.031 3 C -0.190 4.190 4 C -0.049 4.049 5 N -0.241 5.241 6 C -0.202 4.202 7 C -0.182 4.182 8 N -0.125 5.125 9 C -0.046 4.046 10 C 0.284 3.716 11 O -0.445 6.445 12 N -0.357 5.357 13 C 0.058 3.942 14 H 0.095 0.905 15 C -0.160 4.160 16 C -0.141 4.141 17 C -0.170 4.170 18 C 0.070 3.930 19 H 0.072 0.928 20 N -0.377 5.377 21 C -0.362 4.362 22 H 0.098 0.902 23 C -0.270 4.270 24 N -0.623 5.623 25 Si 0.796 3.204 26 H -0.220 1.220 27 H -0.190 1.190 28 H -0.228 1.228 29 C -0.160 4.160 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.199 0.801 38 H 0.217 0.783 39 H 0.165 0.835 40 H 0.176 0.824 41 H 0.251 0.749 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.202 0.798 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.932 5.108 18.984 22.026 hybrid contribution 0.893 -1.579 -1.312 2.239 sum -9.039 3.530 17.672 20.161 Atomic orbital electron populations 1.21732 0.91922 1.02412 1.02962 1.19652 0.97371 0.95578 0.90485 1.21686 0.99970 0.94610 1.02775 1.23502 0.96766 0.88835 0.95819 1.70119 1.25806 1.28136 1.00031 1.22633 1.02092 0.95060 1.00448 1.23109 1.07275 1.05326 0.82456 1.45009 1.37870 1.23047 1.06610 1.22000 0.95100 0.98518 0.89025 1.21075 0.85974 0.84051 0.80452 1.90771 1.68470 1.28176 1.57106 1.46039 1.25830 1.33656 1.30205 1.20754 0.83725 0.97209 0.92506 0.90457 1.21834 0.97912 0.96528 0.99698 1.21395 1.02102 0.95374 0.95199 1.22131 0.99516 1.00128 0.95194 1.20379 0.95901 0.93196 0.83517 0.92847 1.42662 1.74070 1.16098 1.04873 1.19609 1.31247 0.93292 0.92078 0.90200 1.25498 1.03140 1.01193 0.97171 1.69815 1.52113 1.35685 1.04639 0.85242 0.78019 0.79959 0.77181 1.22013 1.18957 1.22825 1.21967 1.02690 0.96851 0.94461 0.92699 0.90025 0.92372 0.89362 0.90026 0.92666 0.94621 0.80062 0.78280 0.83548 0.82397 0.74906 0.90895 0.92184 0.91704 0.91319 0.93893 0.93824 0.79775 0.94293 0.90919 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.18 71.98 0.66 -1.42 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.24 16 3 C -0.13 -2.73 9.17 71.98 0.66 -2.07 16 4 C 0.21 5.04 6.39 138.13 0.88 5.92 16 5 N -0.52 -14.22 11.25 -188.13 -2.12 -16.33 16 6 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 7 C -0.05 -0.96 11.58 83.09 0.96 0.01 16 8 N -0.44 -8.79 2.24 -518.34 -1.16 -9.95 16 9 C 0.08 1.05 6.16 85.64 0.53 1.58 16 10 C 0.50 9.99 7.86 87.66 0.69 10.68 16 11 O -0.57 -16.65 16.08 -3.03 -0.05 -16.70 16 12 N -0.70 -13.10 4.23 -442.52 -1.87 -14.97 16 13 C 0.16 3.73 2.78 44.99 0.13 3.85 16 14 H 0.08 1.96 7.58 -2.39 -0.02 1.94 16 15 C -0.12 -2.70 5.60 30.59 0.17 -2.53 16 16 C -0.10 -2.31 5.77 30.59 0.18 -2.13 16 17 C -0.13 -3.92 5.50 30.59 0.17 -3.75 16 18 C 0.18 5.78 2.60 44.99 0.12 5.90 16 19 H 0.05 1.61 6.44 -2.39 -0.02 1.60 16 20 N -0.74 -33.43 5.12 -322.94 -1.65 -35.08 16 21 C -0.23 -11.68 9.93 84.03 0.83 -10.85 16 22 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 24 N -0.97 -57.24 13.06 21.65 0.28 -56.95 16 25 Si 0.97 43.79 29.55 68.60 2.03 45.82 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 29 C -0.12 -3.29 5.08 30.60 0.16 -3.14 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.09 1.44 6.85 -2.38 -0.02 1.42 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 39 H 0.15 1.23 7.30 -2.39 -0.02 1.21 16 40 H 0.16 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.41 6.44 6.87 -92.71 -0.64 5.80 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.37 7.60 -2.39 -0.02 1.35 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.37 18.60 7.80 -92.71 -0.72 17.88 16 49 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 50 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -72.80 407.76 2.57 -70.23 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -0.44 Total: 36.20 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 7.55 Total: -2.26 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -6.52 Total: -133.29 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.05 Total: -16.70 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.80 2.57 -70.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364695.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.842 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds