Wall clock time and date at job start Tue Mar 31 2020 20:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.50695 * 109.47521 * 120.00224 * 2 1 3 5 5 N 1.30500 * 125.65055 * 300.17678 * 4 2 1 6 6 C 1.34127 * 109.25698 * 180.28770 * 5 4 2 7 7 C 1.34675 * 108.01977 * 359.72461 * 6 5 4 8 8 N 1.35047 * 125.65234 * 119.99083 * 4 2 1 9 9 C 1.46501 * 126.39633 * 359.97438 * 8 4 2 10 10 C 1.50700 * 109.47051 * 84.70357 * 9 8 4 11 11 O 1.21280 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99979 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00270 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47129 * 325.00460 * 13 12 10 15 15 C 1.53002 * 109.46766 * 85.00180 * 13 12 10 16 16 C 1.52997 * 109.47092 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47445 * 300.00075 * 16 15 13 18 18 C 1.53002 * 109.46711 * 59.99695 * 17 16 15 19 19 H 1.09002 * 109.47070 * 60.00376 * 18 17 16 20 20 N 1.46499 * 109.46799 * 180.02562 * 18 17 16 21 21 C 1.36943 * 119.99899 * 275.00081 * 20 18 17 22 22 H 1.07999 * 119.99910 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00158 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00037 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47114 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47251 * 119.99501 * 25 23 21 28 28 H 1.48499 * 109.47208 * 239.99574 * 25 23 21 29 29 C 1.53000 * 109.47233 * 300.00001 * 18 17 16 30 30 H 1.09007 * 109.46604 * 299.99675 * 1 2 3 31 31 H 1.08997 * 109.47642 * 59.99375 * 1 2 3 32 32 H 1.09003 * 109.47341 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46604 * 240.00325 * 2 1 3 34 34 H 1.09003 * 109.46613 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47495 * 300.00303 * 3 2 1 36 36 H 1.09000 * 109.47480 * 60.00680 * 3 2 1 37 37 H 1.08000 * 125.99279 * 179.72859 * 6 5 4 38 38 H 1.08003 * 126.59184 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46731 * 324.70924 * 9 8 4 40 40 H 1.08995 * 109.47450 * 204.70896 * 9 8 4 41 41 H 0.97000 * 120.00239 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.47067 * 60.00243 * 15 13 12 43 43 H 1.09000 * 109.47312 * 300.00216 * 15 13 12 44 44 H 1.09001 * 109.47375 * 180.02562 * 16 15 13 45 45 H 1.09002 * 109.47497 * 59.99850 * 16 15 13 46 46 H 1.09002 * 109.46589 * 300.00331 * 17 16 15 47 47 H 1.08996 * 109.47165 * 179.97438 * 17 16 15 48 48 H 0.96998 * 120.00630 * 95.00428 * 20 18 17 49 49 H 0.97001 * 119.99843 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.47194 * 179.97438 * 29 18 17 51 51 H 1.08992 * 109.47399 * 300.00166 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7835 -0.3640 2.4637 6 6 2.3970 -1.2185 3.2957 7 6 3.0461 -2.1328 2.5496 8 7 2.8120 -1.8131 1.2394 9 6 3.3178 -2.5298 0.0660 10 6 4.5858 -1.8730 -0.4156 11 8 5.0241 -0.9023 0.1644 12 7 5.2333 -2.3651 -1.4904 13 6 6.4663 -1.7271 -1.9583 14 1 6.3984 -0.6499 -1.8060 15 6 7.6566 -2.2794 -1.1715 16 6 8.9442 -1.6127 -1.6597 17 6 9.1372 -1.9054 -3.1491 18 6 7.9468 -1.3531 -3.9358 19 1 7.8787 -0.2760 -3.7831 20 7 8.1313 -1.6339 -5.3617 21 6 8.8713 -0.7817 -6.1372 22 1 9.3185 0.0976 -5.6977 23 6 9.0457 -1.0475 -7.4884 24 7 8.5003 -2.1189 -8.0242 25 14 10.0556 0.1146 -8.5462 26 1 10.5567 1.2354 -7.7106 27 1 11.2061 -0.6209 -9.1300 28 1 9.2067 0.6535 -9.6389 29 6 6.6592 -2.0200 -3.4476 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 2.3745 -1.1803 4.3747 38 1 3.6372 -2.9596 2.9148 39 1 2.5703 -2.5018 -0.7269 40 1 3.5244 -3.5658 0.3342 41 1 4.8830 -3.1417 -1.9541 42 1 7.7245 -3.3566 -1.3239 43 1 7.5194 -2.0705 -0.1106 44 1 9.7923 -2.0065 -1.0995 45 1 8.8761 -0.5355 -1.5071 46 1 9.2053 -2.9826 -3.3017 47 1 10.0543 -1.4300 -3.4969 48 1 7.7294 -2.4235 -5.7566 49 1 8.6225 -2.3048 -8.9683 50 1 5.8111 -1.6261 -4.0077 51 1 6.7274 -3.0970 -3.6003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981364696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:33 Heat of formation + Delta-G solvation = 15.923671 kcal Electronic energy + Delta-G solvation = -29216.233239 eV Core-core repulsion = 25344.021763 eV Total energy + Delta-G solvation = -3872.211475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.38270 -40.07822 -38.08390 -35.54361 -34.84826 -34.21908 -33.42833 -31.20385 -29.95492 -28.99587 -28.10451 -27.36954 -27.31636 -23.82181 -23.09844 -22.36970 -21.81586 -21.30481 -20.56385 -19.68197 -19.21616 -17.79810 -17.53958 -17.00144 -16.14021 -15.81347 -15.28953 -14.98983 -14.62208 -14.46388 -14.43376 -13.99297 -13.87955 -13.76111 -13.63009 -13.55964 -13.21833 -13.06412 -12.94229 -12.63184 -12.30485 -12.23777 -12.13186 -11.69698 -11.37446 -11.16478 -11.07185 -11.04667 -10.93784 -10.81553 -10.59149 -10.44178 -10.30778 -10.20247 -10.08422 -9.93889 -9.73148 -9.53456 -9.16719 -8.93168 -8.48061 -7.02110 -5.82376 -3.11195 1.77641 2.26115 2.37425 3.00079 3.06954 3.39741 3.46179 3.47812 4.14140 4.24232 4.30931 4.44189 4.52837 4.55027 4.81799 4.87654 4.92875 4.98083 5.04276 5.21696 5.30733 5.42373 5.47592 5.48337 5.51011 5.59360 5.63104 5.63935 5.70243 5.76981 5.77154 5.87746 5.92788 5.99336 6.04968 6.12134 6.16485 6.17858 6.22323 6.38933 6.44178 6.51754 6.61783 6.64360 6.89116 6.93338 7.04748 7.24973 7.66569 7.91628 7.98370 8.36321 9.47783 10.04114 10.38774 11.40353 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002334 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.666176 B =11995.009082 C =12839.554856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.139 4.139 4 C 0.230 3.770 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.053 4.053 8 N -0.441 5.441 9 C 0.082 3.918 10 C 0.493 3.507 11 O -0.517 6.517 12 N -0.718 5.718 13 C 0.150 3.850 14 H 0.088 0.912 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.401 0.599 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.069 0.931 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 -3.856 18.723 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.198 4.198 4 C -0.033 4.033 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.185 4.185 8 N -0.124 5.124 9 C -0.046 4.046 10 C 0.277 3.723 11 O -0.392 6.392 12 N -0.370 5.370 13 C 0.046 3.954 14 H 0.106 0.894 15 C -0.162 4.162 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.168 4.168 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.186 0.814 38 H 0.189 0.811 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.235 0.765 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.851 -2.407 19.204 23.800 hybrid contribution 1.041 -1.062 -1.193 1.906 sum -12.810 -3.470 18.011 22.373 Atomic orbital electron populations 1.21793 0.93068 1.01995 1.02873 1.19543 0.96424 0.96233 0.90634 1.21761 1.01782 0.93747 1.02460 1.23176 0.96280 0.88119 0.95678 1.70178 1.24530 1.26844 0.98935 1.22219 1.01254 0.94490 0.99498 1.22605 1.08109 1.05227 0.82580 1.44841 1.38443 1.23328 1.05794 1.21706 0.96172 0.97552 0.89123 1.20651 0.85555 0.84931 0.81205 1.90797 1.66929 1.25932 1.55551 1.46120 1.26846 1.33571 1.30448 1.21080 0.82035 0.98265 0.94047 0.89388 1.21870 0.94772 1.00270 0.99246 1.21487 0.96054 1.00426 0.97392 1.22299 1.01317 1.01233 0.92893 1.20090 0.90159 0.96960 0.85469 0.93361 1.42402 1.62132 1.29264 1.02651 1.19284 1.23892 1.03235 0.90415 0.91089 1.24738 1.01210 0.98077 0.96953 1.69667 1.49050 1.27307 1.12183 0.86136 0.79567 0.80057 0.80563 1.20515 1.21868 1.21860 1.22096 1.00426 1.01691 0.92561 0.91293 0.91743 0.92888 0.90598 0.92123 0.91904 0.91489 0.81438 0.81141 0.86150 0.85966 0.76538 0.92017 0.92327 0.92445 0.92166 0.92637 0.91814 0.78342 0.93567 0.91248 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C -0.01 -0.08 3.25 -91.77 -0.30 -0.38 16 3 C -0.14 -1.47 9.18 37.16 0.34 -1.13 16 4 C 0.23 2.73 6.39 -155.41 -0.99 1.74 16 5 N -0.49 -6.51 11.25 -10.82 -0.12 -6.63 16 6 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 7 C -0.05 -0.54 11.58 -16.56 -0.19 -0.73 16 8 N -0.44 -4.56 2.24 -115.19 -0.26 -4.82 16 9 C 0.08 0.59 6.16 -5.19 -0.03 0.56 16 10 C 0.49 5.23 7.86 -10.99 -0.09 5.15 16 11 O -0.52 -7.94 16.08 5.56 0.09 -7.85 16 12 N -0.72 -6.82 5.08 -53.80 -0.27 -7.09 16 13 C 0.15 1.88 2.45 -67.93 -0.17 1.72 16 14 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 15 C -0.12 -1.53 5.49 -26.73 -0.15 -1.68 16 16 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 17 C -0.14 -2.31 5.50 -26.73 -0.15 -2.45 16 18 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -17.23 5.12 -53.42 -0.27 -17.50 16 21 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 22 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -27.47 13.06 55.49 0.72 -26.75 16 25 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 C -0.13 -1.86 4.86 -26.73 -0.13 -1.99 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.66 6.86 -51.92 -0.36 0.31 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 39 H 0.12 0.58 7.30 -51.93 -0.38 0.20 16 40 H 0.12 0.50 8.13 -51.93 -0.42 0.08 16 41 H 0.40 2.62 8.60 -40.82 -0.35 2.27 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 47 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.38 9.64 7.80 -40.82 -0.32 9.33 16 49 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -34.43 412.20 -10.19 -44.62 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: -8.95 Total: 8.89 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -2.31 Total: -6.07 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.20 Total: -62.80 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.43 -10.19 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.544 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds