Wall clock time and date at job start Tue Mar 31 2020 20:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.50695 * 109.47521 * 120.00224 * 2 1 3 5 5 N 1.30500 * 125.65055 * 300.17678 * 4 2 1 6 6 C 1.34127 * 109.25698 * 180.28770 * 5 4 2 7 7 C 1.34675 * 108.01977 * 359.72461 * 6 5 4 8 8 N 1.35047 * 125.65234 * 119.99083 * 4 2 1 9 9 C 1.46501 * 126.39633 * 359.97438 * 8 4 2 10 10 C 1.50700 * 109.47051 * 84.70357 * 9 8 4 11 11 O 1.21280 * 120.00352 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99979 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00270 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47129 * 325.00460 * 13 12 10 15 15 C 1.53002 * 109.46766 * 85.00180 * 13 12 10 16 16 C 1.52997 * 109.47092 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47445 * 300.00075 * 16 15 13 18 18 C 1.53002 * 109.46711 * 59.99695 * 17 16 15 19 19 H 1.09002 * 109.47070 * 60.00376 * 18 17 16 20 20 N 1.46499 * 109.46799 * 180.02562 * 18 17 16 21 21 C 1.36943 * 119.99899 * 275.00081 * 20 18 17 22 22 H 1.07999 * 119.99910 * 359.97438 * 21 20 18 23 23 C 1.38807 * 119.99996 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00158 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00037 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47114 * 359.97438 * 25 23 21 27 27 H 1.48505 * 109.47251 * 119.99501 * 25 23 21 28 28 H 1.48499 * 109.47208 * 239.99574 * 25 23 21 29 29 C 1.53000 * 109.47233 * 300.00001 * 18 17 16 30 30 H 1.09007 * 109.46604 * 299.99675 * 1 2 3 31 31 H 1.08997 * 109.47642 * 59.99375 * 1 2 3 32 32 H 1.09003 * 109.47341 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46604 * 240.00325 * 2 1 3 34 34 H 1.09003 * 109.46613 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47495 * 300.00303 * 3 2 1 36 36 H 1.09000 * 109.47480 * 60.00680 * 3 2 1 37 37 H 1.08000 * 125.99279 * 179.72859 * 6 5 4 38 38 H 1.08003 * 126.59184 * 180.02562 * 7 6 5 39 39 H 1.09005 * 109.46731 * 324.70924 * 9 8 4 40 40 H 1.08995 * 109.47450 * 204.70896 * 9 8 4 41 41 H 0.97000 * 120.00239 * 0.02562 * 12 10 9 42 42 H 1.09002 * 109.47067 * 60.00243 * 15 13 12 43 43 H 1.09000 * 109.47312 * 300.00216 * 15 13 12 44 44 H 1.09001 * 109.47375 * 180.02562 * 16 15 13 45 45 H 1.09002 * 109.47497 * 59.99850 * 16 15 13 46 46 H 1.09002 * 109.46589 * 300.00331 * 17 16 15 47 47 H 1.08996 * 109.47165 * 179.97438 * 17 16 15 48 48 H 0.96998 * 120.00630 * 95.00428 * 20 18 17 49 49 H 0.97001 * 119.99843 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.47194 * 179.97438 * 29 18 17 51 51 H 1.08992 * 109.47399 * 300.00166 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7835 -0.3640 2.4637 6 6 2.3970 -1.2185 3.2957 7 6 3.0461 -2.1328 2.5496 8 7 2.8120 -1.8131 1.2394 9 6 3.3178 -2.5298 0.0660 10 6 4.5858 -1.8730 -0.4156 11 8 5.0241 -0.9023 0.1644 12 7 5.2333 -2.3651 -1.4904 13 6 6.4663 -1.7271 -1.9583 14 1 6.3984 -0.6499 -1.8060 15 6 7.6566 -2.2794 -1.1715 16 6 8.9442 -1.6127 -1.6597 17 6 9.1372 -1.9054 -3.1491 18 6 7.9468 -1.3531 -3.9358 19 1 7.8787 -0.2760 -3.7831 20 7 8.1313 -1.6339 -5.3617 21 6 8.8713 -0.7817 -6.1372 22 1 9.3185 0.0976 -5.6977 23 6 9.0457 -1.0475 -7.4884 24 7 8.5003 -2.1189 -8.0242 25 14 10.0556 0.1146 -8.5462 26 1 10.5567 1.2354 -7.7106 27 1 11.2061 -0.6209 -9.1300 28 1 9.2067 0.6535 -9.6389 29 6 6.6592 -2.0200 -3.4476 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 2.3745 -1.1803 4.3747 38 1 3.6372 -2.9596 2.9148 39 1 2.5703 -2.5018 -0.7269 40 1 3.5244 -3.5658 0.3342 41 1 4.8830 -3.1417 -1.9541 42 1 7.7245 -3.3566 -1.3239 43 1 7.5194 -2.0705 -0.1106 44 1 9.7923 -2.0065 -1.0995 45 1 8.8761 -0.5355 -1.5071 46 1 9.2053 -2.9826 -3.3017 47 1 10.0543 -1.4300 -3.4969 48 1 7.7294 -2.4235 -5.7566 49 1 8.6225 -2.3048 -8.9683 50 1 5.8111 -1.6261 -4.0077 51 1 6.7274 -3.0970 -3.6003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981364696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:31 Heat of formation + Delta-G solvation = -5.915411 kcal Electronic energy + Delta-G solvation = -29217.180252 eV Core-core repulsion = 25344.021763 eV Total energy + Delta-G solvation = -3873.158489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.14524 -41.03823 -39.30102 -36.28846 -36.28156 -35.02968 -34.80062 -32.94970 -31.05117 -29.83617 -29.54265 -28.26227 -28.06053 -25.71740 -23.91033 -23.44270 -22.99439 -22.15978 -21.56170 -20.93792 -20.07982 -19.22444 -18.39811 -18.28484 -17.28114 -16.57378 -16.42729 -16.13975 -15.83221 -15.60635 -15.34066 -15.25107 -15.07383 -15.02147 -14.68362 -14.52335 -14.29971 -14.22283 -13.81312 -13.67849 -13.44300 -13.26963 -13.02777 -12.92031 -12.84975 -12.41395 -12.27803 -12.15627 -12.13965 -12.04069 -11.98705 -11.90951 -11.67518 -11.61431 -11.41725 -11.22089 -10.90903 -10.88790 -10.42940 -10.11592 -9.25766 -9.00152 -7.95050 -5.22345 0.99835 1.46490 1.46992 1.47544 1.56664 1.69408 2.20227 2.24605 2.55924 3.38564 3.41494 3.56916 3.63896 3.72170 3.78127 3.87035 4.02517 4.08794 4.13238 4.19209 4.24680 4.29724 4.35040 4.42453 4.51613 4.56499 4.60522 4.65221 4.73781 4.75363 4.77960 4.89222 4.94139 5.00279 5.04781 5.09321 5.14677 5.20479 5.26456 5.31605 5.33392 5.41838 5.43185 5.49524 5.52910 5.64120 5.87863 6.18099 6.28429 6.50077 7.15441 7.19137 7.34939 8.10469 8.34132 9.28346 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.002334 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.666176 B =11995.009082 C =12839.554856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 C -0.134 4.134 4 C 0.213 3.787 5 N -0.523 5.523 6 C -0.058 4.058 7 C -0.048 4.048 8 N -0.445 5.445 9 C 0.083 3.917 10 C 0.495 3.505 11 O -0.569 6.569 12 N -0.704 5.704 13 C 0.162 3.838 14 H 0.063 0.937 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.127 4.127 18 C 0.176 3.824 19 H 0.032 0.968 20 N -0.735 5.735 21 C -0.235 4.235 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.965 3.035 26 H -0.270 1.270 27 H -0.294 1.294 28 H -0.293 1.293 29 C -0.114 4.114 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.181 0.819 38 H 0.202 0.798 39 H 0.150 0.850 40 H 0.164 0.836 41 H 0.419 0.581 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.074 0.926 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.038 0.962 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.064 0.936 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 -5.427 19.319 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.030 4.030 3 C -0.192 4.192 4 C -0.050 4.050 5 N -0.242 5.242 6 C -0.204 4.204 7 C -0.180 4.180 8 N -0.127 5.127 9 C -0.043 4.043 10 C 0.281 3.719 11 O -0.447 6.447 12 N -0.357 5.357 13 C 0.056 3.944 14 H 0.081 0.919 15 C -0.153 4.153 16 C -0.147 4.147 17 C -0.167 4.167 18 C 0.068 3.932 19 H 0.050 0.950 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.266 4.266 24 N -0.618 5.618 25 Si 0.795 3.205 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.221 1.221 29 C -0.152 4.152 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.199 0.801 38 H 0.219 0.781 39 H 0.168 0.832 40 H 0.181 0.819 41 H 0.257 0.743 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.207 0.793 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.502 -3.996 19.828 24.888 hybrid contribution 1.257 -0.543 -1.298 1.887 sum -13.245 -4.540 18.530 23.224 Atomic orbital electron populations 1.21731 0.91803 1.02527 1.02914 1.19644 0.97440 0.95352 0.90555 1.21698 0.99862 0.94918 1.02741 1.23488 0.96830 0.88888 0.95771 1.70116 1.25889 1.28110 1.00113 1.22642 1.02187 0.95109 1.00458 1.23119 1.07130 1.05304 0.82440 1.45029 1.37872 1.23056 1.06711 1.22016 0.94736 0.98526 0.88993 1.21233 0.86153 0.84078 0.80478 1.90795 1.68463 1.28306 1.57186 1.45864 1.25683 1.33795 1.30308 1.20700 0.83717 0.97250 0.92730 0.91860 1.21786 0.93570 1.01008 0.98898 1.21417 0.97724 1.00380 0.95146 1.22102 0.99122 1.00718 0.94743 1.20304 0.93026 0.96682 0.83221 0.94968 1.42562 1.61739 1.28520 1.04618 1.19583 1.23052 1.03194 0.90879 0.91199 1.25454 1.03055 0.99797 0.98273 1.69794 1.50876 1.29013 1.12099 0.85185 0.77947 0.78491 0.78844 1.19443 1.22091 1.22065 1.21864 0.97779 1.01936 0.93648 0.92823 0.90074 0.92086 0.89193 0.94865 0.90113 0.92688 0.80148 0.78087 0.83216 0.81888 0.74309 0.90294 0.92357 0.90758 0.92836 0.92528 0.94288 0.79305 0.94055 0.91769 0.90183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 9.18 71.98 0.66 -1.31 16 2 C -0.01 -0.18 3.25 -11.54 -0.04 -0.22 16 3 C -0.13 -2.85 9.18 71.98 0.66 -2.19 16 4 C 0.21 4.87 6.39 138.13 0.88 5.75 16 5 N -0.52 -14.04 11.25 -188.13 -2.12 -16.15 16 6 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 7 C -0.05 -0.87 11.58 83.09 0.96 0.10 16 8 N -0.44 -8.18 2.24 -518.34 -1.16 -9.34 16 9 C 0.08 0.88 6.16 85.63 0.53 1.40 16 10 C 0.50 9.23 7.86 87.66 0.69 9.92 16 11 O -0.57 -16.94 16.08 -3.03 -0.05 -16.99 16 12 N -0.70 -11.26 5.08 -442.53 -2.25 -13.51 16 13 C 0.16 3.77 2.45 44.99 0.11 3.88 16 14 H 0.06 1.85 7.58 -2.39 -0.02 1.83 16 15 C -0.11 -2.57 5.49 30.59 0.17 -2.40 16 16 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 17 C -0.13 -4.19 5.50 30.60 0.17 -4.02 16 18 C 0.18 6.49 2.77 44.99 0.12 6.62 16 19 H 0.03 1.28 8.08 -2.39 -0.02 1.27 16 20 N -0.73 -35.17 5.12 -322.94 -1.65 -36.82 16 21 C -0.24 -12.75 9.93 84.03 0.83 -11.91 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 24 N -0.97 -57.50 13.06 21.65 0.28 -57.22 16 25 Si 0.97 45.60 29.55 68.60 2.03 47.62 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 29 C -0.11 -3.11 4.86 30.59 0.15 -2.96 16 30 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.37 6.86 -2.38 -0.02 1.36 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.18 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.15 0.75 7.30 -2.38 -0.02 0.73 16 40 H 0.16 0.44 8.13 -2.39 -0.02 0.42 16 41 H 0.42 3.75 8.60 -92.71 -0.80 2.95 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.37 18.98 7.80 -92.71 -0.72 18.26 16 49 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.08 1.99 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -77.39 412.20 2.02 -75.37 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.60 Total: 30.96 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 7.54 Total: -3.93 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -6.90 Total: -133.05 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.62 kcal Total: -77.39 2.02 -75.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.458 kcal (2) G-P(sol) polarization free energy of solvation -77.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds