Wall clock time and date at job start Tue Mar 31 2020 20:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47191 * 2 1 4 4 C 1.50704 * 109.46690 * 119.99250 * 2 1 3 5 5 N 1.30500 * 125.65452 * 300.04498 * 4 2 1 6 6 C 1.34128 * 109.25469 * 179.97438 * 5 4 2 7 7 C 1.34661 * 108.02414 * 359.73315 * 6 5 4 8 8 N 1.35048 * 125.64818 * 119.99790 * 4 2 1 9 9 C 1.46506 * 126.39631 * 0.04279 * 8 4 2 10 10 C 1.50703 * 109.47289 * 84.99519 * 9 8 4 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99642 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47723 * 35.00206 * 13 12 10 15 15 C 1.53001 * 109.47271 * 275.00130 * 13 12 10 16 16 C 1.53005 * 109.47436 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46985 * 59.99528 * 16 15 13 18 18 C 1.52991 * 109.47422 * 300.00417 * 17 16 15 19 19 H 1.09000 * 109.47374 * 299.99715 * 18 17 16 20 20 N 1.46505 * 109.47324 * 180.02562 * 18 17 16 21 21 C 1.36944 * 119.99898 * 84.99866 * 20 18 17 22 22 H 1.08002 * 119.99700 * 0.02562 * 21 20 18 23 23 C 1.38806 * 119.99734 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00556 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99561 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46879 * 60.00166 * 25 23 21 27 27 H 1.48505 * 109.46799 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47334 * 299.99805 * 25 23 21 29 29 C 1.53002 * 109.47415 * 60.00199 * 18 17 16 30 30 H 1.08998 * 109.47767 * 300.00743 * 1 2 3 31 31 H 1.09005 * 109.46905 * 60.00465 * 1 2 3 32 32 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47244 * 239.99203 * 2 1 3 34 34 H 1.08998 * 109.47677 * 59.99469 * 3 2 1 35 35 H 1.09009 * 109.47382 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47196 * 299.99272 * 3 2 1 37 37 H 1.08003 * 125.98310 * 180.02562 * 6 5 4 38 38 H 1.08002 * 126.59186 * 180.28713 * 7 6 5 39 39 H 1.09001 * 109.47060 * 204.99969 * 9 8 4 40 40 H 1.09004 * 109.47073 * 324.99458 * 9 8 4 41 41 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 42 42 H 1.09007 * 109.47219 * 300.00161 * 15 13 12 43 43 H 1.09001 * 109.47043 * 59.99678 * 15 13 12 44 44 H 1.08999 * 109.46345 * 299.99896 * 16 15 13 45 45 H 1.08994 * 109.47040 * 180.02562 * 16 15 13 46 46 H 1.09000 * 109.46718 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.47011 * 60.00715 * 17 16 15 48 48 H 0.96991 * 120.00197 * 265.00196 * 20 18 17 49 49 H 0.96998 * 120.00393 * 179.97438 * 24 23 21 50 50 H 1.08995 * 109.47250 * 180.02562 * 29 18 17 51 51 H 1.08999 * 109.46633 * 59.99877 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7103 1.2306 5 7 1.7851 -0.3623 2.4639 6 6 2.3923 -1.2214 3.2960 7 6 3.0352 -2.1399 2.5501 8 7 2.8118 -1.8130 1.2399 9 6 3.3190 -2.5289 0.0666 10 6 4.5914 -1.8762 -0.4090 11 8 5.0315 -0.9086 0.1749 12 7 5.2407 -2.3684 -1.4826 13 6 6.4778 -1.7342 -1.9445 14 1 7.0399 -1.3661 -1.0863 15 6 6.1367 -0.5649 -2.8703 16 6 7.4288 0.0971 -3.3533 17 6 8.2727 -0.9270 -4.1148 18 6 8.6138 -2.0963 -3.1890 19 1 9.1762 -1.7282 -2.3309 20 7 9.4224 -3.0766 -3.9181 21 6 10.7801 -2.9179 -4.0017 22 1 11.2547 -2.0702 -3.5299 23 6 11.5461 -3.8464 -4.6929 24 7 10.9677 -4.8798 -5.2675 25 14 13.3979 -3.6295 -4.8075 26 1 13.9816 -3.6280 -3.4421 27 1 13.9796 -4.7477 -5.5928 28 1 13.7048 -2.3407 -5.4785 29 6 7.3217 -2.7583 -2.7061 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9562 -0.8901 37 1 2.3657 -1.1856 4.3751 38 1 3.6171 -2.9731 2.9156 39 1 3.5204 -3.5665 0.3331 40 1 2.5745 -2.4961 -0.7290 41 1 4.8889 -3.1425 -1.9493 42 1 5.5747 -0.9330 -3.7287 43 1 5.5351 0.1645 -2.3279 44 1 7.9911 0.4652 -2.4952 45 1 7.1857 0.9304 -4.0125 46 1 9.1934 -0.4555 -4.4585 47 1 7.7103 -1.2951 -4.9730 48 1 8.9962 -3.8381 -4.3415 49 1 11.5030 -5.5285 -5.7508 50 1 7.5648 -3.5910 -2.0462 51 1 6.7595 -3.1264 -3.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981364697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:41 Heat of formation + Delta-G solvation = 16.056270 kcal Electronic energy + Delta-G solvation = -29217.132125 eV Core-core repulsion = 25344.926400 eV Total energy + Delta-G solvation = -3872.205725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38567 -40.07768 -38.08117 -35.58429 -34.84624 -34.22039 -33.42549 -31.20155 -29.95395 -29.00181 -28.10551 -27.36882 -27.36456 -23.81832 -23.11934 -22.37533 -21.79654 -21.32715 -20.55270 -19.69470 -19.21514 -17.79918 -17.54385 -16.99957 -16.19283 -15.77909 -15.27126 -14.98247 -14.64802 -14.48834 -14.45810 -14.00035 -13.84095 -13.78655 -13.69960 -13.50726 -13.22964 -13.09093 -12.90925 -12.65800 -12.35573 -12.23077 -12.12735 -11.73949 -11.42250 -11.21063 -11.06813 -11.04526 -10.91315 -10.80858 -10.59162 -10.43702 -10.31864 -10.23552 -10.09380 -9.95249 -9.72522 -9.53087 -9.16574 -8.92121 -8.48439 -7.02139 -5.81928 -3.10890 1.77722 2.26247 2.36868 3.00280 3.06540 3.40864 3.45598 3.46189 4.11434 4.23779 4.30924 4.42426 4.52979 4.54762 4.80442 4.87736 4.88787 4.98409 5.00904 5.22025 5.30209 5.42093 5.42656 5.46332 5.51246 5.59612 5.60355 5.64147 5.64913 5.72102 5.77557 5.88106 5.93085 5.96159 6.05309 6.08795 6.14539 6.17217 6.22644 6.39247 6.44571 6.52053 6.61686 6.64728 6.89433 6.93085 7.05134 7.25092 7.65612 7.91758 7.97683 8.36756 9.47998 10.04361 10.39096 11.40642 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.002191 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.268762 B =12777.926513 C =13291.710891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.228 3.772 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.052 4.052 8 N -0.441 5.441 9 C 0.082 3.918 10 C 0.494 3.506 11 O -0.517 6.517 12 N -0.718 5.718 13 C 0.150 3.850 14 H 0.088 0.912 15 C -0.123 4.123 16 C -0.115 4.115 17 C -0.137 4.137 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.129 4.129 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.401 0.599 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.383 0.617 49 H 0.256 0.744 50 H 0.068 0.932 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.071 5.281 9.502 24.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.035 4.035 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.184 4.184 8 N -0.124 5.124 9 C -0.046 4.046 10 C 0.277 3.723 11 O -0.392 6.392 12 N -0.370 5.370 13 C 0.046 3.954 14 H 0.106 0.894 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.177 4.177 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.582 5.582 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.168 4.168 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.186 0.814 38 H 0.189 0.811 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.235 0.765 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.955 6.594 10.098 25.050 hybrid contribution 1.444 -1.493 -0.727 2.201 sum -20.511 5.101 9.371 23.120 Atomic orbital electron populations 1.21793 0.93096 1.02013 1.02838 1.19524 0.96383 0.96173 0.90644 1.21759 1.01764 0.93795 1.02412 1.23155 0.96376 0.88278 0.95672 1.70171 1.24527 1.26850 0.98928 1.22218 1.01479 0.94264 0.99511 1.22634 1.08154 1.05032 0.82544 1.44830 1.38514 1.23219 1.05827 1.21707 0.96030 0.97715 0.89105 1.20645 0.85770 0.84929 0.80985 1.90797 1.66652 1.26083 1.55682 1.46118 1.26731 1.33704 1.30429 1.21081 0.83635 0.93278 0.97443 0.89428 1.21872 0.98408 0.97136 0.98729 1.21485 0.95584 0.98216 1.00074 1.22295 0.99227 0.96997 0.99215 1.20088 0.89458 0.89545 0.93591 0.93400 1.42386 1.03982 1.27020 1.63047 1.19193 0.83227 1.06728 1.27840 0.91203 1.24736 0.98012 0.97394 1.00771 1.69643 1.34623 1.14097 1.39877 0.86278 0.85486 0.76964 0.77531 1.21251 1.21695 1.21231 1.22095 0.97264 0.97755 0.99662 0.91262 0.91823 0.92868 0.90677 0.91461 0.92131 0.92013 0.81408 0.81057 0.85891 0.86231 0.76536 0.91984 0.92251 0.92194 0.92411 0.91823 0.92624 0.78344 0.93460 0.91307 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.17 37.16 0.34 -0.71 16 2 C -0.01 -0.06 3.25 -91.78 -0.30 -0.36 16 3 C -0.14 -1.36 9.17 37.15 0.34 -1.02 16 4 C 0.23 2.65 6.40 -155.41 -0.99 1.65 16 5 N -0.49 -6.44 11.25 -10.81 -0.12 -6.57 16 6 C -0.03 -0.32 11.87 -17.82 -0.21 -0.53 16 7 C -0.05 -0.53 11.58 -16.56 -0.19 -0.73 16 8 N -0.44 -4.56 2.24 -115.18 -0.26 -4.82 16 9 C 0.08 0.59 6.17 -5.19 -0.03 0.56 16 10 C 0.49 5.24 7.86 -10.98 -0.09 5.16 16 11 O -0.52 -7.96 16.08 5.56 0.09 -7.87 16 12 N -0.72 -6.83 5.08 -53.81 -0.27 -7.11 16 13 C 0.15 1.88 2.46 -67.93 -0.17 1.72 16 14 H 0.09 1.31 7.58 -51.93 -0.39 0.91 16 15 C -0.12 -1.52 5.49 -26.73 -0.15 -1.66 16 16 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 17 C -0.14 -2.30 5.50 -26.74 -0.15 -2.45 16 18 C 0.18 3.41 2.77 -67.93 -0.19 3.22 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -17.29 5.12 -53.42 -0.27 -17.56 16 21 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 25 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 29 C -0.13 -1.87 4.86 -26.73 -0.13 -2.00 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.60 6.85 -51.93 -0.36 0.24 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.17 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.12 0.55 8.13 -51.93 -0.42 0.12 16 40 H 0.12 0.54 7.28 -51.93 -0.38 0.16 16 41 H 0.40 2.62 8.60 -40.82 -0.35 2.27 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.38 9.67 7.80 -40.82 -0.32 9.35 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 412.19 15.07 6.21 6.21 Total: -1.00 -34.48 412.19 -10.19 -44.67 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.95 Total: 8.75 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.32 Total: -5.95 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.20 Total: -62.84 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.48 -10.19 -44.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.725 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds