Wall clock time and date at job start Tue Mar 31 2020 20:09:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47191 * 2 1 4 4 C 1.50704 * 109.46690 * 119.99250 * 2 1 3 5 5 N 1.30500 * 125.65452 * 300.04498 * 4 2 1 6 6 C 1.34128 * 109.25469 * 179.97438 * 5 4 2 7 7 C 1.34661 * 108.02414 * 359.73315 * 6 5 4 8 8 N 1.35048 * 125.64818 * 119.99790 * 4 2 1 9 9 C 1.46506 * 126.39631 * 0.04279 * 8 4 2 10 10 C 1.50703 * 109.47289 * 84.99519 * 9 8 4 11 11 O 1.21279 * 119.99926 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99773 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99642 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47723 * 35.00206 * 13 12 10 15 15 C 1.53001 * 109.47271 * 275.00130 * 13 12 10 16 16 C 1.53005 * 109.47436 * 180.02562 * 15 13 12 17 17 C 1.52996 * 109.46985 * 59.99528 * 16 15 13 18 18 C 1.52991 * 109.47422 * 300.00417 * 17 16 15 19 19 H 1.09000 * 109.47374 * 299.99715 * 18 17 16 20 20 N 1.46505 * 109.47324 * 180.02562 * 18 17 16 21 21 C 1.36944 * 119.99898 * 84.99866 * 20 18 17 22 22 H 1.08002 * 119.99700 * 0.02562 * 21 20 18 23 23 C 1.38806 * 119.99734 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00556 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99561 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.46879 * 60.00166 * 25 23 21 27 27 H 1.48505 * 109.46799 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47334 * 299.99805 * 25 23 21 29 29 C 1.53002 * 109.47415 * 60.00199 * 18 17 16 30 30 H 1.08998 * 109.47767 * 300.00743 * 1 2 3 31 31 H 1.09005 * 109.46905 * 60.00465 * 1 2 3 32 32 H 1.09002 * 109.47508 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47244 * 239.99203 * 2 1 3 34 34 H 1.08998 * 109.47677 * 59.99469 * 3 2 1 35 35 H 1.09009 * 109.47382 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47196 * 299.99272 * 3 2 1 37 37 H 1.08003 * 125.98310 * 180.02562 * 6 5 4 38 38 H 1.08002 * 126.59186 * 180.28713 * 7 6 5 39 39 H 1.09001 * 109.47060 * 204.99969 * 9 8 4 40 40 H 1.09004 * 109.47073 * 324.99458 * 9 8 4 41 41 H 0.96998 * 120.00166 * 0.02562 * 12 10 9 42 42 H 1.09007 * 109.47219 * 300.00161 * 15 13 12 43 43 H 1.09001 * 109.47043 * 59.99678 * 15 13 12 44 44 H 1.08999 * 109.46345 * 299.99896 * 16 15 13 45 45 H 1.08994 * 109.47040 * 180.02562 * 16 15 13 46 46 H 1.09000 * 109.46718 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.47011 * 60.00715 * 17 16 15 48 48 H 0.96991 * 120.00197 * 265.00196 * 20 18 17 49 49 H 0.96998 * 120.00393 * 179.97438 * 24 23 21 50 50 H 1.08995 * 109.47250 * 180.02562 * 29 18 17 51 51 H 1.08999 * 109.46633 * 59.99877 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7103 1.2306 5 7 1.7851 -0.3623 2.4639 6 6 2.3923 -1.2214 3.2960 7 6 3.0352 -2.1399 2.5501 8 7 2.8118 -1.8130 1.2399 9 6 3.3190 -2.5289 0.0666 10 6 4.5914 -1.8762 -0.4090 11 8 5.0315 -0.9086 0.1749 12 7 5.2407 -2.3684 -1.4826 13 6 6.4778 -1.7342 -1.9445 14 1 7.0399 -1.3661 -1.0863 15 6 6.1367 -0.5649 -2.8703 16 6 7.4288 0.0971 -3.3533 17 6 8.2727 -0.9270 -4.1148 18 6 8.6138 -2.0963 -3.1890 19 1 9.1762 -1.7282 -2.3309 20 7 9.4224 -3.0766 -3.9181 21 6 10.7801 -2.9179 -4.0017 22 1 11.2547 -2.0702 -3.5299 23 6 11.5461 -3.8464 -4.6929 24 7 10.9677 -4.8798 -5.2675 25 14 13.3979 -3.6295 -4.8075 26 1 13.9816 -3.6280 -3.4421 27 1 13.9796 -4.7477 -5.5928 28 1 13.7048 -2.3407 -5.4785 29 6 7.3217 -2.7583 -2.7061 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9562 -0.8901 37 1 2.3657 -1.1856 4.3751 38 1 3.6171 -2.9731 2.9156 39 1 3.5204 -3.5665 0.3331 40 1 2.5745 -2.4961 -0.7290 41 1 4.8889 -3.1425 -1.9493 42 1 5.5747 -0.9330 -3.7287 43 1 5.5351 0.1645 -2.3279 44 1 7.9911 0.4652 -2.4952 45 1 7.1857 0.9304 -4.0125 46 1 9.1934 -0.4555 -4.4585 47 1 7.7103 -1.2951 -4.9730 48 1 8.9962 -3.8381 -4.3415 49 1 11.5030 -5.5285 -5.7508 50 1 7.5648 -3.5910 -2.0462 51 1 6.7595 -3.1264 -3.5643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981364697.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:39 Heat of formation + Delta-G solvation = -5.852473 kcal Electronic energy + Delta-G solvation = -29218.082159 eV Core-core repulsion = 25344.926400 eV Total energy + Delta-G solvation = -3873.155760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.14588 -41.03870 -39.29948 -36.28556 -36.26827 -35.03077 -34.79999 -32.94859 -31.05072 -29.83514 -29.54467 -28.26052 -28.03710 -25.71452 -23.89802 -23.44755 -22.97689 -22.18410 -21.54599 -20.94444 -20.06520 -19.22368 -18.39652 -18.28227 -17.28896 -16.66475 -16.33898 -16.11487 -15.75597 -15.69111 -15.33781 -15.23926 -15.08037 -15.02239 -14.64891 -14.55544 -14.33290 -14.15968 -13.79579 -13.69864 -13.42732 -13.27053 -13.00442 -12.91260 -12.80479 -12.39674 -12.30260 -12.19576 -12.11861 -12.06310 -11.98139 -11.89046 -11.66395 -11.61497 -11.40963 -11.22079 -10.91255 -10.87670 -10.42742 -10.11528 -9.26657 -9.00462 -7.94922 -5.22429 0.99777 1.46650 1.47162 1.48457 1.54519 1.68795 2.19931 2.24663 2.55900 3.38224 3.42222 3.56637 3.64208 3.72303 3.79674 3.86739 4.02913 4.08453 4.14099 4.21155 4.24897 4.30216 4.36347 4.43062 4.51749 4.56736 4.60514 4.65682 4.74313 4.75713 4.80312 4.90970 4.96098 5.00607 5.06273 5.10011 5.15621 5.21023 5.28079 5.33561 5.34419 5.42725 5.43374 5.49271 5.52576 5.64433 5.86622 6.18815 6.28148 6.50118 7.15371 7.18587 7.34661 8.10371 8.34102 9.28004 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.002191 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.268762 B =12777.926513 C =13291.710891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.008 4.008 3 C -0.134 4.134 4 C 0.214 3.786 5 N -0.524 5.524 6 C -0.056 4.056 7 C -0.051 4.051 8 N -0.445 5.445 9 C 0.083 3.917 10 C 0.495 3.505 11 O -0.570 6.570 12 N -0.704 5.704 13 C 0.161 3.839 14 H 0.062 0.938 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.126 4.126 18 C 0.176 3.824 19 H 0.031 0.969 20 N -0.735 5.735 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.967 5.967 25 Si 0.966 3.034 26 H -0.281 1.281 27 H -0.295 1.295 28 H -0.280 1.280 29 C -0.114 4.114 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.084 0.916 37 H 0.180 0.820 38 H 0.199 0.801 39 H 0.159 0.841 40 H 0.155 0.845 41 H 0.419 0.581 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.038 0.962 47 H 0.056 0.944 48 H 0.375 0.625 49 H 0.251 0.749 50 H 0.062 0.938 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.646 4.825 8.895 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.049 4.049 5 N -0.243 5.243 6 C -0.203 4.203 7 C -0.183 4.183 8 N -0.127 5.127 9 C -0.043 4.043 10 C 0.281 3.719 11 O -0.448 6.448 12 N -0.356 5.356 13 C 0.056 3.944 14 H 0.080 0.920 15 C -0.152 4.152 16 C -0.147 4.147 17 C -0.167 4.167 18 C 0.068 3.932 19 H 0.049 0.951 20 N -0.375 5.375 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.796 3.204 26 H -0.207 1.207 27 H -0.221 1.221 28 H -0.206 1.206 29 C -0.152 4.152 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.197 0.803 38 H 0.215 0.785 39 H 0.176 0.824 40 H 0.173 0.827 41 H 0.257 0.743 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.075 0.925 48 H 0.207 0.793 49 H 0.060 0.940 50 H 0.081 0.919 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.563 6.143 9.496 26.137 hybrid contribution 1.929 -1.295 -0.481 2.373 sum -21.634 4.847 9.015 23.933 Atomic orbital electron populations 1.21736 0.91838 1.02491 1.02958 1.19666 0.97373 0.95411 0.90416 1.21698 0.99911 0.94780 1.02784 1.23592 0.96552 0.88803 0.95903 1.70118 1.25912 1.28065 1.00157 1.22616 1.02369 0.94864 1.00436 1.23096 1.07412 1.05192 0.82647 1.45021 1.38019 1.23060 1.06615 1.22016 0.94738 0.98422 0.89100 1.21226 0.86400 0.84108 0.80192 1.90795 1.68210 1.28535 1.57231 1.45862 1.25419 1.34005 1.30351 1.20703 0.84523 0.92889 0.96299 0.91969 1.21789 0.97557 0.96775 0.99123 1.21415 0.95694 0.97850 0.99705 1.22095 0.98719 0.96795 0.99050 1.20303 0.90622 0.89469 0.92843 0.95073 1.42548 1.03513 1.27841 1.63557 1.19514 0.84878 1.06112 1.26514 0.91239 1.25463 1.01980 0.97632 1.01462 1.69779 1.35742 1.14982 1.41239 0.85318 0.80871 0.76747 0.77484 1.20698 1.22082 1.20606 1.21864 0.95596 0.97597 1.00175 0.92992 0.89806 0.92195 0.88840 0.92952 0.94772 0.89764 0.80252 0.78458 0.82367 0.82744 0.74301 0.90178 0.92183 0.92911 0.90665 0.94339 0.92477 0.79314 0.94032 0.91933 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.17 71.98 0.66 -1.08 16 2 C -0.01 -0.14 3.25 -11.54 -0.04 -0.18 16 3 C -0.13 -2.53 9.17 71.98 0.66 -1.87 16 4 C 0.21 4.75 6.40 138.13 0.88 5.63 16 5 N -0.52 -13.93 11.25 -188.13 -2.12 -16.04 16 6 C -0.06 -1.29 11.87 83.52 0.99 -0.30 16 7 C -0.05 -0.98 11.58 83.08 0.96 -0.02 16 8 N -0.44 -8.24 2.24 -518.31 -1.16 -9.41 16 9 C 0.08 0.88 6.17 85.63 0.53 1.41 16 10 C 0.50 9.25 7.86 87.66 0.69 9.94 16 11 O -0.57 -16.98 16.08 -3.03 -0.05 -17.03 16 12 N -0.70 -11.28 5.08 -442.54 -2.25 -13.52 16 13 C 0.16 3.78 2.46 44.99 0.11 3.89 16 14 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 15 C -0.11 -2.54 5.49 30.60 0.17 -2.37 16 16 C -0.11 -2.80 5.92 30.59 0.18 -2.61 16 17 C -0.13 -4.18 5.50 30.59 0.17 -4.01 16 18 C 0.18 6.52 2.77 44.99 0.12 6.64 16 19 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 20 N -0.73 -35.32 5.12 -322.94 -1.65 -36.98 16 21 C -0.24 -12.96 9.93 84.03 0.83 -12.13 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 24 N -0.97 -57.56 13.06 21.65 0.28 -57.28 16 25 Si 0.97 45.62 29.55 68.60 2.03 47.65 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 27 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 28 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 29 C -0.11 -3.13 4.86 30.60 0.15 -2.98 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.18 6.85 -2.39 -0.02 1.16 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 38 H 0.20 2.47 8.06 -2.91 -0.02 2.44 16 39 H 0.16 0.62 8.13 -2.39 -0.02 0.60 16 40 H 0.16 0.60 7.28 -2.38 -0.02 0.58 16 41 H 0.42 3.76 8.60 -92.71 -0.80 2.96 16 42 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 48 H 0.37 19.04 7.80 -92.71 -0.72 18.32 16 49 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 51 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -77.61 412.19 2.02 -75.60 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.60 Total: 30.70 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 7.54 Total: -3.68 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -6.90 Total: -133.22 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.05 Total: -17.03 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -77.61 2.02 -75.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364697.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.743 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds