Wall clock time and date at job start Tue Mar 31 2020 20:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.50704 * 109.47254 * 120.00054 * 2 1 3 5 5 N 1.30504 * 125.64940 * 300.02637 * 4 2 1 6 6 C 1.34120 * 109.25474 * 179.73737 * 5 4 2 7 7 C 1.34663 * 108.02403 * 359.97438 * 6 5 4 8 8 N 1.35042 * 125.65148 * 119.71990 * 4 2 1 9 9 C 1.46500 * 126.39374 * 0.25845 * 8 4 2 10 10 C 1.50697 * 109.46956 * 85.00691 * 9 8 4 11 11 O 1.21281 * 120.00222 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00102 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99977 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.47556 * 34.99768 * 13 12 10 15 15 C 1.52995 * 109.47062 * 274.99744 * 13 12 10 16 16 C 1.53001 * 109.47223 * 300.00143 * 15 13 12 17 17 C 1.53006 * 109.46858 * 299.99962 * 16 15 13 18 18 C 1.52995 * 109.47173 * 60.00007 * 17 16 15 19 19 H 1.09000 * 109.47304 * 59.99685 * 18 17 16 20 20 N 1.46500 * 109.47442 * 179.97438 * 18 17 16 21 21 C 1.36934 * 119.99883 * 275.00246 * 20 18 17 22 22 H 1.08001 * 120.00133 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99766 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00164 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99856 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47336 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.47249 * 120.00296 * 25 23 21 28 28 H 1.48507 * 109.47244 * 240.00455 * 25 23 21 29 29 C 1.52998 * 109.47165 * 154.99417 * 13 12 10 30 30 H 1.09003 * 109.46727 * 299.99596 * 1 2 3 31 31 H 1.08991 * 109.47375 * 59.99841 * 1 2 3 32 32 H 1.09006 * 109.47023 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47055 * 239.99813 * 2 1 3 34 34 H 1.09003 * 109.47173 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46968 * 299.99880 * 3 2 1 36 36 H 1.09005 * 109.47301 * 60.00135 * 3 2 1 37 37 H 1.08010 * 125.99023 * 180.02562 * 6 5 4 38 38 H 1.08005 * 126.59404 * 180.02562 * 7 6 5 39 39 H 1.08999 * 109.46910 * 205.00329 * 9 8 4 40 40 H 1.08995 * 109.47420 * 325.00500 * 9 8 4 41 41 H 0.96992 * 119.99620 * 359.97438 * 12 10 9 42 42 H 1.08999 * 109.47351 * 60.00468 * 15 13 12 43 43 H 1.09010 * 109.47279 * 180.02562 * 15 13 12 44 44 H 1.08996 * 109.47349 * 180.02562 * 16 15 13 45 45 H 1.08997 * 109.47385 * 59.99690 * 16 15 13 46 46 H 1.09000 * 109.47263 * 299.99667 * 17 16 15 47 47 H 1.08997 * 109.46937 * 180.02562 * 17 16 15 48 48 H 0.96998 * 119.99891 * 94.99527 * 20 18 17 49 49 H 0.96998 * 120.00080 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.47229 * 179.97438 * 29 13 12 51 51 H 1.08993 * 109.47593 * 300.00279 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7856 -0.3623 2.4638 6 6 2.3884 -1.2245 3.2958 7 6 3.0327 -2.1420 2.5498 8 7 2.8077 -1.8161 1.2396 9 6 3.3129 -2.5332 0.0662 10 6 4.5882 -1.8852 -0.4078 11 8 5.0313 -0.9193 0.1767 12 7 5.2360 -2.3785 -1.4818 13 6 6.4755 -1.7483 -1.9429 14 1 7.0387 -1.3830 -1.0841 15 6 6.1386 -0.5768 -2.8675 16 6 5.3481 -1.0895 -4.0730 17 6 6.1890 -2.1155 -4.8354 18 6 6.5259 -3.2870 -3.9107 19 1 5.6037 -3.7559 -3.5676 20 7 7.3305 -4.2697 -4.6408 21 6 6.7164 -5.2230 -5.4084 22 1 5.6388 -5.2506 -5.4753 23 6 7.4789 -6.1538 -6.1006 24 7 8.7921 -6.1198 -6.0195 25 14 6.6411 -7.4546 -7.1472 26 1 5.1685 -7.2778 -7.0718 27 1 7.0842 -7.3160 -8.5577 28 1 7.0044 -8.8039 -6.6445 29 6 7.3164 -2.7743 -2.7052 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.3611 -1.1895 4.3749 38 1 3.6153 -2.9749 2.9151 39 1 3.5100 -3.5717 0.3321 40 1 2.5692 -2.4968 -0.7298 41 1 4.8815 -3.1508 -1.9494 42 1 5.5397 0.1542 -2.3244 43 1 7.0609 -0.1081 -3.2110 44 1 5.1085 -0.2550 -4.7319 45 1 4.4259 -1.5585 -3.7300 46 1 7.1112 -1.6466 -5.1785 47 1 5.6260 -2.4804 -5.6944 48 1 8.2983 -4.2451 -4.5805 49 1 9.3248 -6.7705 -6.5029 50 1 8.2384 -2.3053 -3.0486 51 1 7.5564 -3.6089 -2.0465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981364698.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:47 Heat of formation + Delta-G solvation = -1.551005 kcal Electronic energy + Delta-G solvation = -29753.168941 eV Core-core repulsion = 25880.199707 eV Total energy + Delta-G solvation = -3872.969234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.14392 -41.19837 -39.25616 -36.26337 -36.16506 -34.98514 -34.44568 -32.91307 -31.18872 -29.81719 -29.55879 -28.38631 -28.03405 -25.67410 -23.87845 -23.43968 -22.81270 -22.39381 -21.96602 -20.14728 -20.10969 -19.17761 -18.56685 -18.18519 -17.02268 -16.68079 -16.38634 -16.15263 -15.97996 -15.71190 -15.26656 -15.22319 -15.07415 -14.85114 -14.67517 -14.53313 -14.28675 -13.93615 -13.79235 -13.59560 -13.27217 -13.11701 -13.02573 -12.99854 -12.88762 -12.80871 -12.39395 -12.19552 -12.11758 -12.00839 -11.94501 -11.88555 -11.59917 -11.47020 -11.38861 -11.00123 -10.91033 -10.83760 -10.43922 -10.08128 -9.25851 -8.96943 -7.91354 -5.18960 1.01556 1.48272 1.49322 1.50382 1.59239 1.69059 2.21920 2.28962 2.58229 3.42672 3.42938 3.55982 3.69896 3.74896 3.79784 3.88725 3.93307 4.08722 4.14589 4.21610 4.30500 4.31367 4.35994 4.36939 4.56150 4.61083 4.67252 4.72349 4.74763 4.80851 4.81182 4.91542 4.95301 4.95948 5.06636 5.11391 5.18225 5.24020 5.28592 5.34205 5.38434 5.43141 5.46674 5.53086 5.57176 5.67479 5.87441 6.18828 6.31112 6.48745 7.13284 7.18952 7.37399 8.14657 8.35582 9.32515 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.002562 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.024464 B =10927.517454 C =11139.650535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.010 4.010 3 C -0.132 4.132 4 C 0.215 3.785 5 N -0.522 5.522 6 C -0.055 4.055 7 C -0.052 4.052 8 N -0.444 5.444 9 C 0.079 3.921 10 C 0.499 3.501 11 O -0.567 6.567 12 N -0.704 5.704 13 C 0.163 3.837 14 H 0.076 0.924 15 C -0.121 4.121 16 C -0.102 4.102 17 C -0.129 4.129 18 C 0.178 3.822 19 H 0.054 0.946 20 N -0.738 5.738 21 C -0.229 4.229 22 H 0.081 0.919 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.966 3.034 26 H -0.262 1.262 27 H -0.300 1.300 28 H -0.298 1.298 29 C -0.121 4.121 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.035 0.965 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.182 0.818 38 H 0.198 0.802 39 H 0.155 0.845 40 H 0.150 0.850 41 H 0.413 0.587 42 H 0.061 0.939 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.043 0.957 47 H 0.043 0.957 48 H 0.371 0.629 49 H 0.248 0.752 50 H 0.072 0.928 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 10.087 12.429 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.030 4.030 3 C -0.190 4.190 4 C -0.048 4.048 5 N -0.241 5.241 6 C -0.201 4.201 7 C -0.184 4.184 8 N -0.126 5.126 9 C -0.046 4.046 10 C 0.285 3.715 11 O -0.446 6.446 12 N -0.357 5.357 13 C 0.058 3.942 14 H 0.094 0.906 15 C -0.160 4.160 16 C -0.141 4.141 17 C -0.170 4.170 18 C 0.070 3.930 19 H 0.072 0.928 20 N -0.377 5.377 21 C -0.361 4.361 22 H 0.099 0.901 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.796 3.204 26 H -0.186 1.186 27 H -0.228 1.228 28 H -0.225 1.225 29 C -0.160 4.160 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.054 0.946 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.199 0.801 38 H 0.215 0.785 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.251 0.749 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.202 0.798 49 H 0.057 0.943 50 H 0.091 0.909 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.359 11.240 12.915 23.001 hybrid contribution 1.159 -1.886 -1.000 2.429 sum -14.200 9.354 11.915 20.763 Atomic orbital electron populations 1.21737 0.91939 1.02395 1.02982 1.19666 0.97318 0.95589 0.90419 1.21685 0.99986 0.94565 1.02777 1.23560 0.96685 0.88658 0.95889 1.70119 1.25858 1.28097 1.00069 1.22617 1.02292 0.94802 1.00436 1.23100 1.07480 1.05258 0.82582 1.45005 1.38131 1.22877 1.06558 1.21996 0.95032 0.98496 0.89119 1.21074 0.86284 0.84011 0.80176 1.90771 1.68160 1.28366 1.57255 1.46037 1.25664 1.33990 1.30032 1.20752 0.84611 0.92696 0.96155 0.90585 1.21834 1.01105 0.96875 0.96146 1.21400 0.98325 0.98169 0.96163 1.22128 0.99162 0.96794 0.98866 1.20384 0.93717 0.88565 0.90335 0.92835 1.42677 1.05442 1.33821 1.55806 1.19651 0.91889 1.05371 1.19140 0.90130 1.25500 0.95982 1.02374 1.03224 1.69815 1.04830 1.39332 1.48330 0.85176 0.78417 0.78926 0.77888 1.18577 1.22795 1.22511 1.21965 0.98888 0.98304 0.96831 0.92835 0.89857 0.92409 0.89103 0.94593 0.89855 0.92836 0.80115 0.78497 0.82697 0.83227 0.74903 0.92018 0.90936 0.91554 0.91218 0.93860 0.93843 0.79808 0.94308 0.90940 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.18 71.98 0.66 -1.28 16 2 C -0.01 -0.17 3.25 -11.54 -0.04 -0.21 16 3 C -0.13 -2.57 9.18 71.98 0.66 -1.90 16 4 C 0.21 4.97 6.40 138.13 0.88 5.86 16 5 N -0.52 -14.16 11.25 -188.13 -2.12 -16.28 16 6 C -0.05 -1.28 11.87 83.52 0.99 -0.29 16 7 C -0.05 -1.03 11.58 83.09 0.96 -0.07 16 8 N -0.44 -8.81 2.24 -518.35 -1.16 -9.97 16 9 C 0.08 1.05 6.17 85.63 0.53 1.58 16 10 C 0.50 9.99 7.86 87.66 0.69 10.68 16 11 O -0.57 -16.68 16.08 -3.03 -0.05 -16.73 16 12 N -0.70 -13.08 4.23 -442.54 -1.87 -14.95 16 13 C 0.16 3.72 2.78 44.99 0.13 3.85 16 14 H 0.08 1.93 7.58 -2.39 -0.02 1.92 16 15 C -0.12 -2.66 5.60 30.59 0.17 -2.49 16 16 C -0.10 -2.26 5.77 30.60 0.18 -2.08 16 17 C -0.13 -3.88 5.50 30.59 0.17 -3.71 16 18 C 0.18 5.77 2.60 44.99 0.12 5.88 16 19 H 0.05 1.61 6.44 -2.39 -0.02 1.59 16 20 N -0.74 -33.46 5.12 -322.93 -1.65 -35.11 16 21 C -0.23 -11.58 9.93 84.03 0.83 -10.75 16 22 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 23 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 25 Si 0.97 43.82 29.55 68.60 2.03 45.85 16 26 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 28 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 29 C -0.12 -3.31 5.08 30.60 0.16 -3.16 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.78 16 33 H 0.09 1.33 6.84 -2.39 -0.02 1.31 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 37 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 38 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.15 1.13 7.28 -2.39 -0.02 1.11 16 41 H 0.41 6.42 6.87 -92.71 -0.64 5.78 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.07 1.35 7.60 -2.39 -0.02 1.33 16 46 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.37 18.62 7.80 -92.71 -0.72 17.89 16 49 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 50 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -73.07 407.75 2.57 -70.50 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.44 Total: 35.67 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 7.55 Total: -1.93 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -6.52 Total: -133.36 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.05 Total: -16.73 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -73.07 2.57 -70.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981364698.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.950 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds