Wall clock time and date at job start Tue Mar 31 2020 20:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34951 * 126.03565 * 2 1 4 4 C 1.35318 * 107.74256 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.03607 * 180.26207 * 4 3 2 6 6 C 1.53001 * 109.46667 * 53.91118 * 5 4 3 7 7 C 1.52996 * 109.46883 * 173.90986 * 5 4 3 8 8 C 1.50697 * 109.47114 * 293.91391 * 5 4 3 9 9 O 1.21279 * 120.00075 * 4.54434 * 8 5 4 10 10 N 1.34777 * 119.99747 * 184.55428 * 8 5 4 11 11 C 1.46500 * 119.99761 * 180.02562 * 10 8 5 12 12 H 1.09002 * 109.47185 * 324.99497 * 11 10 8 13 13 C 1.53001 * 109.47361 * 84.99668 * 11 10 8 14 14 C 1.53002 * 109.47189 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47031 * 300.00121 * 14 13 11 16 16 C 1.53001 * 109.47233 * 59.99906 * 15 14 13 17 17 H 1.08991 * 109.46739 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46938 * 59.99930 * 16 15 14 19 19 C 1.36939 * 120.00100 * 85.00430 * 18 16 15 20 20 H 1.08008 * 119.99802 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00413 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99616 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00136 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46942 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46972 * 119.99688 * 23 21 19 26 26 H 1.48502 * 109.46690 * 239.99618 * 23 21 19 27 27 C 1.52999 * 109.46873 * 204.99430 * 11 10 8 28 28 C 1.39869 * 107.92205 * 359.97438 * 4 3 2 29 29 N 1.30832 * 108.20151 * 0.02562 * 28 4 3 30 30 H 1.08997 * 109.47401 * 270.00056 * 1 2 3 31 31 H 1.09000 * 109.47246 * 30.00191 * 1 2 3 32 32 H 1.09002 * 109.47044 * 150.00150 * 1 2 3 33 33 H 1.07996 * 126.12847 * 0.03817 * 3 2 1 34 34 H 1.08995 * 109.47161 * 60.00273 * 6 5 4 35 35 H 1.09011 * 109.46311 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47315 * 299.99729 * 6 5 4 37 37 H 1.09006 * 109.46855 * 60.00457 * 7 5 4 38 38 H 1.08997 * 109.47221 * 179.97438 * 7 5 4 39 39 H 1.08995 * 109.47553 * 300.00099 * 7 5 4 40 40 H 0.96996 * 120.00345 * 359.97438 * 10 8 5 41 41 H 1.08996 * 109.46791 * 299.99502 * 13 11 10 42 42 H 1.08993 * 109.47410 * 59.99805 * 13 11 10 43 43 H 1.08995 * 109.47087 * 179.97438 * 14 13 11 44 44 H 1.09002 * 109.47170 * 59.99944 * 14 13 11 45 45 H 1.08993 * 109.46868 * 299.99642 * 15 14 13 46 46 H 1.09000 * 109.46461 * 179.97438 * 15 14 13 47 47 H 0.96999 * 120.00184 * 264.99251 * 18 16 15 48 48 H 0.96997 * 119.99715 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.47138 * 299.99730 * 27 11 10 50 50 H 1.09004 * 109.47273 * 60.00155 * 27 11 10 51 51 H 1.07997 * 125.89466 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 0.0048 6 6 4.6855 2.5276 1.1750 7 6 6.0185 0.6768 0.1552 8 6 4.8417 2.3121 -1.2904 9 8 3.9428 2.2231 -2.0998 10 7 5.9065 3.0966 -1.5495 11 6 5.9778 3.8425 -2.8084 12 1 5.5251 3.2533 -3.6059 13 6 5.2238 5.1656 -2.6608 14 6 5.2989 5.9448 -3.9754 15 6 6.7630 6.2276 -4.3177 16 6 7.5171 4.9045 -4.4653 17 1 8.5599 5.1061 -4.7096 18 7 6.9089 4.1129 -5.5376 19 6 7.2834 4.3201 -6.8384 20 1 8.0268 5.0675 -7.0738 21 6 6.7076 3.5697 -7.8544 22 7 5.8020 2.6587 -7.5674 23 14 7.2179 3.8529 -9.6289 24 1 8.2441 4.9249 -9.6837 25 1 7.7818 2.5982 -10.1880 26 1 6.0330 4.2613 -10.4255 27 6 7.4418 4.1254 -3.1513 28 6 3.5347 -0.7321 -0.0003 29 7 2.2892 -1.1327 -0.0002 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9282 2.1193 0.0006 34 1 4.6323 1.9730 2.1118 35 1 5.5713 3.1629 1.1791 36 1 3.7946 3.1463 1.0678 37 1 6.0772 -0.0230 -0.6786 38 1 6.9041 1.3123 0.1586 39 1 5.9653 0.1222 1.0920 40 1 6.6253 3.1680 -0.9021 41 1 4.1809 4.9640 -2.4165 42 1 5.6764 5.7548 -1.8633 43 1 4.7613 6.8871 -3.8703 44 1 4.8464 5.3558 -4.7732 45 1 7.2154 6.8166 -3.5199 46 1 6.8164 6.7823 -5.2545 47 1 6.2412 3.4419 -5.3261 48 1 5.3999 2.1341 -8.2773 49 1 7.8945 4.7145 -2.3538 50 1 7.9791 3.1828 -3.2565 51 1 4.4055 -1.3710 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981427074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:38 Heat of formation + Delta-G solvation = 39.148135 kcal Electronic energy + Delta-G solvation = -30022.740951 eV Core-core repulsion = 26151.536564 eV Total energy + Delta-G solvation = -3871.204387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.44948 -39.82177 -38.06665 -35.42819 -34.37319 -33.08794 -32.73096 -30.89293 -29.77864 -28.94404 -27.93695 -27.63730 -26.46251 -23.90471 -23.51944 -21.96793 -21.78331 -20.91409 -20.59386 -19.39361 -18.36207 -17.32365 -17.03528 -16.47446 -15.77047 -15.41872 -14.82452 -14.72635 -14.56471 -14.44533 -14.03729 -13.83871 -13.70651 -13.52457 -13.23275 -13.07360 -12.83176 -12.75346 -12.58798 -12.35798 -12.26105 -12.13572 -11.96939 -11.72883 -11.58381 -11.34551 -11.17771 -10.86073 -10.77349 -10.67570 -10.57780 -10.14625 -10.13136 -10.01170 -9.76874 -9.48248 -9.41200 -9.26260 -8.85281 -8.62870 -8.38480 -6.88970 -5.69505 -2.98652 1.90037 2.48622 2.72215 2.95428 3.46652 3.52000 3.53417 3.54692 4.36336 4.64159 4.66545 4.73009 4.83233 4.96725 4.98295 5.03329 5.16945 5.22666 5.26143 5.29286 5.41883 5.52662 5.55079 5.62626 5.65264 5.65735 5.75139 5.78864 5.85225 5.90023 5.92083 5.95758 5.99439 6.13612 6.16326 6.18945 6.24670 6.45006 6.48702 6.60143 6.69349 6.78416 6.88067 6.90320 6.96695 7.07661 7.15494 7.67739 7.76098 7.80700 8.48277 8.55637 9.59388 10.17711 10.51785 11.52641 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.003010 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.752270 B = 9300.349312 C =10248.086670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.086 3.914 4 C -0.215 4.215 5 C 0.000 4.000 6 C -0.134 4.134 7 C -0.141 4.141 8 C 0.518 3.482 9 O -0.525 6.525 10 N -0.725 5.725 11 C 0.146 3.854 12 H 0.097 0.903 13 C -0.118 4.118 14 C -0.110 4.110 15 C -0.135 4.135 16 C 0.179 3.821 17 H 0.050 0.950 18 N -0.722 5.722 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.293 1.293 27 C -0.127 4.127 28 C 0.059 3.941 29 N -0.302 5.302 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.393 0.607 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.042 0.958 46 H 0.060 0.940 47 H 0.385 0.615 48 H 0.254 0.746 49 H 0.060 0.940 50 H 0.067 0.933 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 -0.228 22.874 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.060 4.060 4 C -0.226 4.226 5 C -0.005 4.005 6 C -0.192 4.192 7 C -0.198 4.198 8 C 0.302 3.698 9 O -0.400 6.400 10 N -0.375 5.375 11 C 0.042 3.958 12 H 0.115 0.885 13 C -0.157 4.157 14 C -0.148 4.148 15 C -0.175 4.175 16 C 0.068 3.932 17 H 0.068 0.932 18 N -0.364 5.364 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.166 4.166 28 C -0.127 4.127 29 N -0.124 5.124 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.185 0.815 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.226 0.774 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.079 0.921 47 H 0.220 0.780 48 H 0.064 0.936 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.423 -1.272 22.100 22.791 hybrid contribution 0.800 0.743 -0.793 1.350 sum -4.623 -0.529 21.307 21.809 Atomic orbital electron populations 1.21824 0.74412 1.04617 1.02980 1.48367 1.06510 1.03870 1.57267 1.22132 0.90782 0.93041 1.00077 1.19360 0.93031 0.93225 1.17016 1.19000 0.93783 0.94267 0.93458 1.21852 1.02265 0.98167 0.96915 1.21870 0.95190 0.99876 1.02892 1.20483 0.82156 0.79025 0.88099 1.90735 1.37810 1.63520 1.47935 1.46160 1.22543 1.47440 1.21404 1.21020 0.96637 0.92385 0.85727 0.88487 1.21825 0.99906 0.95803 0.98166 1.21356 0.97459 0.98934 0.97038 1.22173 0.95852 0.99479 1.00009 1.20147 0.95859 0.90086 0.87085 0.93202 1.42524 1.48571 1.43434 1.01893 1.19266 1.18095 1.16003 0.83551 0.91213 1.24738 0.99415 0.98979 0.97815 1.69685 1.30760 1.25885 1.31433 0.86173 0.77546 0.77173 0.85630 1.20642 1.21992 1.21989 1.22056 0.94772 1.01078 0.98694 1.23706 0.95140 0.94287 0.99597 1.77310 1.01583 1.08341 1.25118 0.90985 0.89502 0.89366 0.81478 0.91451 0.91953 0.92340 0.91612 0.91847 0.91273 0.77368 0.92497 0.92902 0.93434 0.90417 0.93928 0.92090 0.78008 0.93600 0.92166 0.91461 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.47 59.85 0.69 1.50 16 2 N -0.38 -4.66 4.01 -68.16 -0.27 -4.94 16 3 C 0.09 1.06 10.18 -17.22 -0.18 0.89 16 4 C -0.21 -2.69 4.27 -105.05 -0.45 -3.14 16 5 C 0.00 -0.01 0.79 -156.81 -0.12 -0.13 16 6 C -0.13 -1.09 8.24 37.16 0.31 -0.79 16 7 C -0.14 -1.23 7.30 37.16 0.27 -0.96 16 8 C 0.52 7.56 6.42 -10.99 -0.07 7.49 16 9 O -0.53 -10.27 15.19 5.56 0.08 -10.18 16 10 N -0.72 -9.49 4.90 -53.81 -0.26 -9.75 16 11 C 0.15 2.38 2.28 -67.93 -0.16 2.22 16 12 H 0.10 2.07 5.94 -51.93 -0.31 1.76 16 13 C -0.12 -1.84 5.50 -26.73 -0.15 -1.99 16 14 C -0.11 -1.92 5.77 -26.73 -0.15 -2.07 16 15 C -0.13 -2.36 5.61 -26.73 -0.15 -2.51 16 16 C 0.18 3.44 3.10 -67.96 -0.21 3.23 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 N -0.72 -17.80 4.28 -53.45 -0.23 -18.03 16 19 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 23 Si 0.90 22.68 29.55 -169.99 -5.02 17.65 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 C -0.13 -1.99 5.07 -26.76 -0.14 -2.13 16 28 C 0.06 0.75 10.99 -17.37 -0.19 0.56 16 29 N -0.30 -4.27 12.57 30.62 0.39 -3.89 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.17 1.76 8.00 -52.49 -0.42 1.34 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.42 7.89 -51.92 -0.41 0.01 16 36 H 0.06 0.50 7.85 -51.93 -0.41 0.09 16 37 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 38 H 0.06 0.46 7.32 -51.93 -0.38 0.08 16 39 H 0.07 0.49 8.11 -51.93 -0.42 0.06 16 40 H 0.39 3.85 7.50 -40.82 -0.31 3.55 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.66 7.60 -51.93 -0.39 1.26 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 47 H 0.38 10.32 6.06 -40.82 -0.25 10.08 16 48 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 49 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.18 1.82 7.35 -52.49 -0.39 1.43 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -35.58 402.47 -8.17 -43.75 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -8.70 Total: 12.30 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.94 Total: -5.02 kcal Atomic # 7 Polarization: -64.91 SS G_CDS: 0.34 Total: -64.57 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.08 Total: -10.18 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.58 -8.17 -43.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981427074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.899 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds