Wall clock time and date at job start Tue Mar 31 2020 20:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34951 * 126.03565 * 2 1 4 4 C 1.35318 * 107.74256 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.03607 * 180.26207 * 4 3 2 6 6 C 1.53001 * 109.46667 * 53.91118 * 5 4 3 7 7 C 1.52996 * 109.46883 * 173.90986 * 5 4 3 8 8 C 1.50697 * 109.47114 * 293.91391 * 5 4 3 9 9 O 1.21279 * 120.00075 * 4.54434 * 8 5 4 10 10 N 1.34777 * 119.99747 * 184.55428 * 8 5 4 11 11 C 1.46500 * 119.99761 * 180.02562 * 10 8 5 12 12 H 1.09002 * 109.47185 * 324.99497 * 11 10 8 13 13 C 1.53001 * 109.47361 * 84.99668 * 11 10 8 14 14 C 1.53002 * 109.47189 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47031 * 300.00121 * 14 13 11 16 16 C 1.53001 * 109.47233 * 59.99906 * 15 14 13 17 17 H 1.08991 * 109.46739 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46938 * 59.99930 * 16 15 14 19 19 C 1.36939 * 120.00100 * 85.00430 * 18 16 15 20 20 H 1.08008 * 119.99802 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00413 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99616 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00136 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46942 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46972 * 119.99688 * 23 21 19 26 26 H 1.48502 * 109.46690 * 239.99618 * 23 21 19 27 27 C 1.52999 * 109.46873 * 204.99430 * 11 10 8 28 28 C 1.39869 * 107.92205 * 359.97438 * 4 3 2 29 29 N 1.30832 * 108.20151 * 0.02562 * 28 4 3 30 30 H 1.08997 * 109.47401 * 270.00056 * 1 2 3 31 31 H 1.09000 * 109.47246 * 30.00191 * 1 2 3 32 32 H 1.09002 * 109.47044 * 150.00150 * 1 2 3 33 33 H 1.07996 * 126.12847 * 0.03817 * 3 2 1 34 34 H 1.08995 * 109.47161 * 60.00273 * 6 5 4 35 35 H 1.09011 * 109.46311 * 179.97438 * 6 5 4 36 36 H 1.08995 * 109.47315 * 299.99729 * 6 5 4 37 37 H 1.09006 * 109.46855 * 60.00457 * 7 5 4 38 38 H 1.08997 * 109.47221 * 179.97438 * 7 5 4 39 39 H 1.08995 * 109.47553 * 300.00099 * 7 5 4 40 40 H 0.96996 * 120.00345 * 359.97438 * 10 8 5 41 41 H 1.08996 * 109.46791 * 299.99502 * 13 11 10 42 42 H 1.08993 * 109.47410 * 59.99805 * 13 11 10 43 43 H 1.08995 * 109.47087 * 179.97438 * 14 13 11 44 44 H 1.09002 * 109.47170 * 59.99944 * 14 13 11 45 45 H 1.08993 * 109.46868 * 299.99642 * 15 14 13 46 46 H 1.09000 * 109.46461 * 179.97438 * 15 14 13 47 47 H 0.96999 * 120.00184 * 264.99251 * 18 16 15 48 48 H 0.96997 * 119.99715 * 180.02562 * 22 21 19 49 49 H 1.08993 * 109.47138 * 299.99730 * 27 11 10 50 50 H 1.09004 * 109.47273 * 60.00155 * 27 11 10 51 51 H 1.07997 * 125.89466 * 179.97438 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0006 5 6 4.7680 1.5453 0.0048 6 6 4.6855 2.5276 1.1750 7 6 6.0185 0.6768 0.1552 8 6 4.8417 2.3121 -1.2904 9 8 3.9428 2.2231 -2.0998 10 7 5.9065 3.0966 -1.5495 11 6 5.9778 3.8425 -2.8084 12 1 5.5251 3.2533 -3.6059 13 6 5.2238 5.1656 -2.6608 14 6 5.2989 5.9448 -3.9754 15 6 6.7630 6.2276 -4.3177 16 6 7.5171 4.9045 -4.4653 17 1 8.5599 5.1061 -4.7096 18 7 6.9089 4.1129 -5.5376 19 6 7.2834 4.3201 -6.8384 20 1 8.0268 5.0675 -7.0738 21 6 6.7076 3.5697 -7.8544 22 7 5.8020 2.6587 -7.5674 23 14 7.2179 3.8529 -9.6289 24 1 8.2441 4.9249 -9.6837 25 1 7.7818 2.5982 -10.1880 26 1 6.0330 4.2613 -10.4255 27 6 7.4418 4.1254 -3.1513 28 6 3.5347 -0.7321 -0.0003 29 7 2.2892 -1.1327 -0.0002 30 1 -0.3634 0.0000 1.0276 31 1 -0.3634 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 1.9282 2.1193 0.0006 34 1 4.6323 1.9730 2.1118 35 1 5.5713 3.1629 1.1791 36 1 3.7946 3.1463 1.0678 37 1 6.0772 -0.0230 -0.6786 38 1 6.9041 1.3123 0.1586 39 1 5.9653 0.1222 1.0920 40 1 6.6253 3.1680 -0.9021 41 1 4.1809 4.9640 -2.4165 42 1 5.6764 5.7548 -1.8633 43 1 4.7613 6.8871 -3.8703 44 1 4.8464 5.3558 -4.7732 45 1 7.2154 6.8166 -3.5199 46 1 6.8164 6.7823 -5.2545 47 1 6.2412 3.4419 -5.3261 48 1 5.3999 2.1341 -8.2773 49 1 7.8945 4.7145 -2.3538 50 1 7.9791 3.1828 -3.2565 51 1 4.4055 -1.3710 -0.0011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981427074.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:36 Heat of formation + Delta-G solvation = 14.681238 kcal Electronic energy + Delta-G solvation = -30023.801915 eV Core-core repulsion = 26151.536564 eV Total energy + Delta-G solvation = -3872.265351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.37759 -41.00774 -39.43377 -36.39084 -35.95019 -34.62005 -33.70959 -32.66414 -30.82954 -30.23895 -29.51104 -28.30967 -27.21429 -25.69719 -24.78028 -23.27628 -23.07213 -21.85013 -21.71541 -20.57558 -19.69019 -19.21481 -18.13295 -17.46112 -17.06323 -16.53183 -16.30447 -15.96518 -15.87612 -15.36718 -15.29963 -15.25663 -15.13553 -14.78422 -14.67766 -14.12695 -13.73426 -13.57789 -13.47053 -13.42131 -13.33461 -13.21701 -13.13225 -12.88844 -12.87229 -12.82384 -12.57218 -12.36069 -12.12506 -12.09315 -11.91617 -11.78353 -11.53317 -11.49505 -11.37914 -11.12241 -10.81364 -10.49130 -10.33237 -9.88944 -9.30367 -8.94366 -7.90216 -5.17716 0.97129 1.45478 1.46471 1.56327 1.67853 1.75686 1.84375 2.44665 2.57871 3.43317 3.54730 3.79755 3.87529 3.88890 3.98497 4.03883 4.11968 4.20763 4.24318 4.27798 4.39910 4.40875 4.43830 4.49938 4.63150 4.63969 4.74292 4.80029 4.81487 4.83171 4.85680 4.90034 4.98597 5.05273 5.09872 5.13957 5.16910 5.26760 5.34389 5.35485 5.44706 5.47629 5.51934 5.58093 5.70202 5.71304 5.72173 6.12965 6.31673 6.74054 6.75946 7.37027 7.47589 8.17844 8.37613 9.33505 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013338 B = 0.003010 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.752270 B = 9300.349312 C =10248.086670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.384 5.384 3 C 0.076 3.924 4 C -0.229 4.229 5 C 0.009 3.991 6 C -0.130 4.130 7 C -0.140 4.140 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.708 5.708 11 C 0.154 3.846 12 H 0.036 0.964 13 C -0.107 4.107 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.166 3.834 17 H 0.053 0.947 18 N -0.735 5.735 19 C -0.227 4.227 20 H 0.079 0.921 21 C -0.083 4.083 22 N -0.974 5.974 23 Si 0.968 3.032 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.299 1.299 27 C -0.115 4.115 28 C 0.048 3.952 29 N -0.336 5.336 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.180 0.820 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.414 0.586 41 H 0.041 0.959 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.024 0.976 45 H 0.087 0.913 46 H 0.038 0.962 47 H 0.370 0.630 48 H 0.246 0.754 49 H 0.110 0.890 50 H 0.058 0.942 51 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 1.745 25.750 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.071 4.071 4 C -0.241 4.241 5 C 0.004 3.996 6 C -0.187 4.187 7 C -0.198 4.198 8 C 0.301 3.699 9 O -0.462 6.462 10 N -0.360 5.360 11 C 0.049 3.951 12 H 0.055 0.945 13 C -0.145 4.145 14 C -0.145 4.145 15 C -0.165 4.165 16 C 0.058 3.942 17 H 0.071 0.929 18 N -0.376 5.376 19 C -0.360 4.360 20 H 0.097 0.903 21 C -0.275 4.275 22 N -0.626 5.626 23 Si 0.798 3.202 24 H -0.186 1.186 25 H -0.225 1.225 26 H -0.227 1.227 27 C -0.153 4.153 28 C -0.137 4.137 29 N -0.158 5.158 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.197 0.803 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.252 0.748 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.106 0.894 46 H 0.057 0.943 47 H 0.202 0.798 48 H 0.055 0.945 49 H 0.128 0.872 50 H 0.077 0.923 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -3.406 0.749 25.040 25.282 hybrid contribution 0.174 0.179 -1.641 1.660 sum -3.232 0.928 23.399 23.640 Atomic orbital electron populations 1.22139 0.72423 1.05354 1.04728 1.48728 1.07812 1.03404 1.56681 1.22470 0.91177 0.93653 0.99828 1.19694 0.93900 0.93424 1.17105 1.19027 0.94059 0.94428 0.92076 1.21862 1.03080 0.97776 0.96011 1.21921 0.94807 0.99770 1.03278 1.21275 0.81307 0.78551 0.88802 1.90719 1.40029 1.65357 1.50137 1.45914 1.22912 1.46566 1.20569 1.20668 0.96785 0.92174 0.85492 0.94532 1.21720 0.99343 0.95418 0.98030 1.21292 0.97536 0.99212 0.96471 1.22050 0.95541 0.98394 1.00551 1.20507 0.95622 0.90809 0.87300 0.92883 1.42778 1.48478 1.43859 1.02459 1.19701 1.16678 1.14612 0.84969 0.90338 1.25543 1.00337 0.99664 1.01938 1.69876 1.32931 1.27711 1.32059 0.85130 0.77161 0.77163 0.80721 1.18587 1.22454 1.22696 1.21939 0.94253 1.01004 0.98109 1.24091 0.95418 0.94936 0.99243 1.77230 1.02462 1.09705 1.26421 0.88702 0.88019 0.89415 0.80275 0.89896 0.89787 0.92891 0.93499 0.89754 0.89049 0.74823 0.94013 0.88836 0.91498 0.95739 0.89438 0.94324 0.79758 0.94539 0.87153 0.92323 0.78527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 11.47 127.77 1.47 2.91 16 2 N -0.38 -9.54 4.01 -369.55 -1.48 -11.02 16 3 C 0.08 1.87 10.18 83.54 0.85 2.72 16 4 C -0.23 -5.69 4.27 -20.14 -0.09 -5.77 16 5 C 0.01 0.17 0.79 -53.67 -0.04 0.13 16 6 C -0.13 -1.70 8.24 71.98 0.59 -1.11 16 7 C -0.14 -2.12 7.30 71.98 0.53 -1.60 16 8 C 0.51 14.77 6.42 87.66 0.56 15.33 16 9 O -0.58 -23.83 15.19 -3.03 -0.05 -23.87 16 10 N -0.71 -17.21 4.90 -442.53 -2.17 -19.38 16 11 C 0.15 4.90 2.28 44.99 0.10 5.00 16 12 H 0.04 1.65 5.94 -2.39 -0.01 1.64 16 13 C -0.11 -3.12 5.50 30.60 0.17 -2.96 16 14 C -0.11 -3.66 5.77 30.60 0.18 -3.48 16 15 C -0.13 -4.11 5.61 30.60 0.17 -3.94 16 16 C 0.17 6.16 3.10 44.98 0.14 6.30 16 17 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 18 N -0.73 -37.19 4.28 -323.02 -1.38 -38.58 16 19 C -0.23 -12.75 9.93 84.03 0.83 -11.92 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 22 N -0.97 -63.07 13.06 21.65 0.28 -62.79 16 23 Si 0.97 47.79 29.55 68.60 2.03 49.82 16 24 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 25 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 26 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 27 C -0.11 -3.30 5.07 30.58 0.16 -3.15 16 28 C 0.05 1.24 10.99 85.24 0.94 2.18 16 29 N -0.34 -9.66 12.57 -57.03 -0.72 -10.38 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 33 H 0.18 3.77 8.00 -2.91 -0.02 3.75 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.74 7.89 -2.38 -0.02 0.72 16 36 H 0.05 0.77 7.85 -2.39 -0.02 0.75 16 37 H 0.05 0.89 7.75 -2.38 -0.02 0.87 16 38 H 0.08 0.90 7.32 -2.39 -0.02 0.89 16 39 H 0.09 1.00 8.11 -2.39 -0.02 0.98 16 40 H 0.41 6.48 7.50 -92.71 -0.69 5.78 16 41 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 44 H 0.02 1.08 7.60 -2.39 -0.02 1.06 16 45 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.37 20.98 6.06 -92.71 -0.56 20.42 16 48 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.20 3.96 7.35 -2.91 -0.02 3.94 16 Total: -1.00 -83.85 402.47 3.20 -80.65 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.33 Total: 39.37 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 7.02 Total: -3.83 kcal Atomic # 7 Polarization: -136.67 SS G_CDS: -5.47 Total: -142.14 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -83.85 3.20 -80.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981427074.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.329 kcal (2) G-P(sol) polarization free energy of solvation -83.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds