Wall clock time and date at job start Tue Mar 31 2020 20:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03772 * 2 1 4 4 C 1.35314 * 107.74513 * 180.14566 * 3 2 1 5 5 C 1.50701 * 126.04418 * 179.87051 * 4 3 2 6 6 C 1.52998 * 109.47501 * 174.20391 * 5 4 3 7 7 C 1.53006 * 109.46777 * 54.20495 * 5 4 3 8 8 C 1.50695 * 109.47085 * 294.20781 * 5 4 3 9 9 O 1.21286 * 120.00290 * 354.42019 * 8 5 4 10 10 N 1.34780 * 120.00248 * 174.41646 * 8 5 4 11 11 C 1.46498 * 120.00202 * 179.97438 * 10 8 5 12 12 H 1.08994 * 109.47060 * 35.00294 * 11 10 8 13 13 C 1.53003 * 109.47330 * 275.00357 * 11 10 8 14 14 C 1.52996 * 109.47355 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47113 * 59.99545 * 14 13 11 16 16 C 1.52996 * 109.47501 * 300.00190 * 15 14 13 17 17 H 1.08994 * 109.47140 * 300.00060 * 16 15 14 18 18 N 1.46500 * 109.47284 * 179.97438 * 16 15 14 19 19 C 1.36932 * 120.00165 * 84.99937 * 18 16 15 20 20 H 1.08001 * 120.00259 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00293 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99732 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46995 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46947 * 120.00208 * 23 21 19 26 26 H 1.48499 * 109.47041 * 240.00239 * 23 21 19 27 27 C 1.52998 * 109.47205 * 155.00506 * 11 10 8 28 28 C 1.39872 * 107.91935 * 359.61120 * 4 3 2 29 29 N 1.30834 * 108.20237 * 0.23954 * 28 4 3 30 30 H 1.09001 * 109.47299 * 270.26642 * 1 2 3 31 31 H 1.09004 * 109.47115 * 30.26231 * 1 2 3 32 32 H 1.08998 * 109.46999 * 150.26015 * 1 2 3 33 33 H 1.07998 * 126.12840 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.46818 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47187 * 299.99882 * 6 5 4 36 36 H 1.08997 * 109.47050 * 60.00518 * 6 5 4 37 37 H 1.09006 * 109.46938 * 299.99990 * 7 5 4 38 38 H 1.09002 * 109.47010 * 60.00121 * 7 5 4 39 39 H 1.08997 * 109.46957 * 180.02562 * 7 5 4 40 40 H 0.97001 * 120.00128 * 0.02562 * 10 8 5 41 41 H 1.08996 * 109.47033 * 59.99934 * 13 11 10 42 42 H 1.09004 * 109.46752 * 300.00450 * 13 11 10 43 43 H 1.08994 * 109.47596 * 179.97438 * 14 13 11 44 44 H 1.09003 * 109.46944 * 300.00094 * 14 13 11 45 45 H 1.09007 * 109.47247 * 60.00410 * 15 14 13 46 46 H 1.09002 * 109.47242 * 180.02562 * 15 14 13 47 47 H 0.97001 * 119.99909 * 264.99949 * 18 16 15 48 48 H 0.97003 * 120.00111 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.47706 * 59.99345 * 27 11 10 50 50 H 1.09004 * 109.47004 * 299.99894 * 27 11 10 51 51 H 1.08003 * 125.89684 * 180.26952 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0072 6 6 6.0195 0.6767 0.1355 7 6 4.6936 2.5287 1.1624 8 6 4.8329 2.3104 -1.3037 9 8 4.0283 2.0840 -2.1826 10 7 5.7850 3.2467 -1.4868 11 6 5.8484 3.9903 -2.7474 12 1 4.8386 4.1560 -3.1227 13 6 6.6484 3.1862 -3.7742 14 6 6.7152 3.9631 -5.0906 15 6 7.3991 5.3110 -4.8532 16 6 6.5991 6.1151 -3.8264 17 1 5.5894 6.2811 -4.2019 18 7 7.2543 7.4054 -3.5987 19 6 6.9959 8.4610 -4.4318 20 1 6.3088 8.3425 -5.2565 21 6 7.6164 9.6839 -4.2157 22 7 8.4534 9.8285 -3.2103 23 14 7.2634 11.1240 -5.3517 24 1 6.2940 10.7049 -6.3957 25 1 6.6895 12.2455 -4.5656 26 1 8.5257 11.5667 -5.9967 27 6 6.5321 5.3384 -2.5105 28 6 3.5346 -0.7322 0.0037 29 7 2.2891 -1.1328 0.0057 30 1 -0.3634 0.0048 1.0277 31 1 -0.3633 0.8877 -0.5179 32 1 -0.3633 -0.8923 -0.5098 33 1 1.9281 2.1193 -0.0004 34 1 6.9050 1.3123 0.1331 35 1 5.9726 0.1232 1.0734 36 1 6.0725 -0.0240 -0.6977 37 1 3.8020 3.1474 1.0607 38 1 4.6467 1.9751 2.1002 39 1 5.5790 3.1645 1.1593 40 1 6.4288 3.4276 -0.7841 41 1 6.1614 2.2259 -3.9430 42 1 7.6583 3.0205 -3.3989 43 1 7.2855 3.3906 -5.8220 44 1 5.7054 4.1292 -5.4660 45 1 8.4089 5.1450 -4.4777 46 1 7.4463 5.8647 -5.7909 47 1 7.8712 7.5120 -2.8577 48 1 8.8873 10.6829 -3.0594 49 1 7.5419 5.1727 -2.1352 50 1 5.9621 5.9113 -1.7790 51 1 4.4053 -1.3711 0.0073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981427076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:52 Heat of formation + Delta-G solvation = 34.064192 kcal Electronic energy + Delta-G solvation = -29356.825590 eV Core-core repulsion = 25485.400747 eV Total energy + Delta-G solvation = -3871.424843 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59741 -39.96781 -38.04729 -35.58060 -34.63321 -33.36188 -32.90373 -31.11668 -29.91658 -29.11399 -27.82990 -27.61400 -26.60587 -24.04952 -23.60746 -22.11134 -21.55703 -21.03683 -20.45805 -19.80997 -18.97610 -17.45714 -17.00612 -16.55125 -16.09843 -15.54081 -15.05714 -14.82726 -14.57363 -14.39368 -14.19746 -13.95827 -13.84505 -13.57628 -13.30221 -13.14500 -13.00989 -12.90114 -12.70792 -12.57617 -12.39390 -12.35257 -12.11258 -12.02341 -11.72008 -11.27915 -10.99203 -10.91072 -10.88239 -10.72350 -10.69893 -10.31898 -10.22975 -10.14555 -9.93518 -9.66419 -9.55562 -9.44313 -8.91934 -8.83211 -8.52901 -6.96005 -5.77300 -3.05602 1.75338 2.34210 2.57870 2.73816 3.35525 3.42924 3.49123 3.50852 4.22142 4.56129 4.57799 4.59441 4.70534 4.83987 4.85110 4.90250 5.01291 5.08668 5.10764 5.16068 5.33848 5.36114 5.46253 5.49561 5.51700 5.54772 5.63680 5.71480 5.73004 5.76440 5.80024 5.89871 5.92020 5.99926 6.04766 6.06150 6.16848 6.33596 6.37905 6.46276 6.54235 6.58030 6.68822 6.75275 6.82166 6.98331 7.13740 7.53173 7.62135 7.71273 8.34027 8.41589 9.52831 10.10392 10.45176 11.45529 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.002265 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.159380 B =12358.643568 C =12548.065215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.377 5.377 3 C 0.082 3.918 4 C -0.212 4.212 5 C -0.001 4.001 6 C -0.139 4.139 7 C -0.139 4.139 8 C 0.520 3.480 9 O -0.534 6.534 10 N -0.723 5.723 11 C 0.150 3.850 12 H 0.085 0.915 13 C -0.123 4.123 14 C -0.114 4.114 15 C -0.136 4.136 16 C 0.184 3.816 17 H 0.047 0.953 18 N -0.724 5.724 19 C -0.235 4.235 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.129 4.129 28 C 0.059 3.941 29 N -0.302 5.302 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.168 0.832 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.397 0.603 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 -21.041 10.421 25.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.159 5.159 3 C -0.065 4.065 4 C -0.224 4.224 5 C -0.005 4.005 6 C -0.197 4.197 7 C -0.196 4.196 8 C 0.306 3.694 9 O -0.410 6.410 10 N -0.373 5.373 11 C 0.045 3.955 12 H 0.103 0.897 13 C -0.162 4.162 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.065 0.935 18 N -0.365 5.365 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.167 4.167 28 C -0.127 4.127 29 N -0.124 5.124 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.106 0.894 33 H 0.186 0.814 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.232 0.768 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.179 -22.066 9.653 26.553 hybrid contribution 0.950 1.762 -0.129 2.006 sum -10.228 -20.304 9.524 24.649 Atomic orbital electron populations 1.21838 0.74330 1.04569 1.03149 1.48366 1.06534 1.03829 1.57172 1.22152 0.90819 0.93126 1.00385 1.19356 0.92975 0.93253 1.16776 1.19007 0.93844 0.94330 0.93368 1.21844 0.95193 0.99770 1.02845 1.21908 1.02539 0.98185 0.96997 1.20519 0.80525 0.79581 0.88802 1.90691 1.40368 1.65620 1.44298 1.46176 1.33154 1.39311 1.18703 1.20988 1.00565 0.90767 0.83160 0.89677 1.21869 0.99930 0.98651 0.95709 1.21483 1.00920 0.96872 0.96060 1.22285 0.99649 0.94428 1.01317 1.20084 0.95485 0.85952 0.91175 0.93458 1.42412 1.52778 1.06133 1.35160 1.19289 1.20928 0.89435 1.06976 0.91129 1.24735 0.99822 0.97887 0.98644 1.69668 1.32897 1.24488 1.31184 0.86139 0.77355 0.82894 0.79969 1.20554 1.21920 1.21911 1.22072 1.00493 0.94018 1.00158 1.23697 0.95116 0.94260 0.99661 1.77315 1.01590 1.08356 1.25092 0.90874 0.89480 0.89361 0.81447 0.91687 0.91135 0.91823 0.92189 0.91334 0.91724 0.76838 0.92266 0.92119 0.92597 0.92282 0.92669 0.91971 0.78346 0.93617 0.91760 0.91390 0.80265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.65 11.47 59.85 0.69 1.33 16 2 N -0.38 -3.99 4.01 -68.16 -0.27 -4.27 16 3 C 0.08 0.87 10.40 -17.23 -0.18 0.69 16 4 C -0.21 -2.28 4.18 -105.05 -0.44 -2.72 16 5 C 0.00 -0.01 0.80 -156.81 -0.13 -0.13 16 6 C -0.14 -1.01 7.40 37.16 0.27 -0.73 16 7 C -0.14 -1.04 8.14 37.16 0.30 -0.74 16 8 C 0.52 6.43 6.40 -10.99 -0.07 6.36 16 9 O -0.53 -8.75 15.36 5.55 0.09 -8.66 16 10 N -0.72 -8.21 4.91 -53.81 -0.26 -8.47 16 11 C 0.15 2.06 2.46 -67.93 -0.17 1.90 16 12 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 13 C -0.12 -1.67 5.49 -26.73 -0.15 -1.81 16 14 C -0.11 -1.67 5.92 -26.73 -0.16 -1.82 16 15 C -0.14 -2.39 5.50 -26.73 -0.15 -2.54 16 16 C 0.18 3.53 2.77 -67.96 -0.19 3.34 16 17 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 18 N -0.72 -17.68 5.12 -53.45 -0.27 -17.95 16 19 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 23 Si 0.91 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.13 -1.99 4.85 -26.76 -0.13 -2.12 16 28 C 0.06 0.64 10.99 -17.37 -0.19 0.45 16 29 N -0.30 -3.71 12.58 30.63 0.39 -3.33 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.17 1.50 8.01 -52.49 -0.42 1.08 16 34 H 0.06 0.41 7.97 -51.93 -0.41 -0.01 16 35 H 0.07 0.41 8.11 -51.93 -0.42 -0.01 16 36 H 0.06 0.50 7.76 -51.93 -0.40 0.10 16 37 H 0.06 0.47 7.87 -51.93 -0.41 0.07 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.42 7.27 -51.93 -0.38 0.04 16 40 H 0.40 3.60 7.52 -40.82 -0.31 3.29 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.38 9.89 7.80 -40.82 -0.32 9.57 16 48 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.18 1.46 7.36 -52.48 -0.39 1.08 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -34.44 407.28 -8.31 -42.75 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.89 Total: 9.32 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.92 Total: -5.67 kcal Atomic # 7 Polarization: -61.45 SS G_CDS: 0.30 Total: -61.15 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.44 -8.31 -42.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981427076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.818 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds