Wall clock time and date at job start Tue Mar 31 2020 20:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34944 * 126.03772 * 2 1 4 4 C 1.35314 * 107.74513 * 180.14566 * 3 2 1 5 5 C 1.50701 * 126.04418 * 179.87051 * 4 3 2 6 6 C 1.52998 * 109.47501 * 174.20391 * 5 4 3 7 7 C 1.53006 * 109.46777 * 54.20495 * 5 4 3 8 8 C 1.50695 * 109.47085 * 294.20781 * 5 4 3 9 9 O 1.21286 * 120.00290 * 354.42019 * 8 5 4 10 10 N 1.34780 * 120.00248 * 174.41646 * 8 5 4 11 11 C 1.46498 * 120.00202 * 179.97438 * 10 8 5 12 12 H 1.08994 * 109.47060 * 35.00294 * 11 10 8 13 13 C 1.53003 * 109.47330 * 275.00357 * 11 10 8 14 14 C 1.52996 * 109.47355 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47113 * 59.99545 * 14 13 11 16 16 C 1.52996 * 109.47501 * 300.00190 * 15 14 13 17 17 H 1.08994 * 109.47140 * 300.00060 * 16 15 14 18 18 N 1.46500 * 109.47284 * 179.97438 * 16 15 14 19 19 C 1.36932 * 120.00165 * 84.99937 * 18 16 15 20 20 H 1.08001 * 120.00259 * 0.02562 * 19 18 16 21 21 C 1.38817 * 120.00293 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99732 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46995 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46947 * 120.00208 * 23 21 19 26 26 H 1.48499 * 109.47041 * 240.00239 * 23 21 19 27 27 C 1.52998 * 109.47205 * 155.00506 * 11 10 8 28 28 C 1.39872 * 107.91935 * 359.61120 * 4 3 2 29 29 N 1.30834 * 108.20237 * 0.23954 * 28 4 3 30 30 H 1.09001 * 109.47299 * 270.26642 * 1 2 3 31 31 H 1.09004 * 109.47115 * 30.26231 * 1 2 3 32 32 H 1.08998 * 109.46999 * 150.26015 * 1 2 3 33 33 H 1.07998 * 126.12840 * 359.97438 * 3 2 1 34 34 H 1.09006 * 109.46818 * 180.02562 * 6 5 4 35 35 H 1.08999 * 109.47187 * 299.99882 * 6 5 4 36 36 H 1.08997 * 109.47050 * 60.00518 * 6 5 4 37 37 H 1.09006 * 109.46938 * 299.99990 * 7 5 4 38 38 H 1.09002 * 109.47010 * 60.00121 * 7 5 4 39 39 H 1.08997 * 109.46957 * 180.02562 * 7 5 4 40 40 H 0.97001 * 120.00128 * 0.02562 * 10 8 5 41 41 H 1.08996 * 109.47033 * 59.99934 * 13 11 10 42 42 H 1.09004 * 109.46752 * 300.00450 * 13 11 10 43 43 H 1.08994 * 109.47596 * 179.97438 * 14 13 11 44 44 H 1.09003 * 109.46944 * 300.00094 * 14 13 11 45 45 H 1.09007 * 109.47247 * 60.00410 * 15 14 13 46 46 H 1.09002 * 109.47242 * 180.02562 * 15 14 13 47 47 H 0.97001 * 119.99909 * 264.99949 * 18 16 15 48 48 H 0.97003 * 120.00111 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.47706 * 59.99345 * 27 11 10 50 50 H 1.09004 * 109.47004 * 299.99894 * 27 11 10 51 51 H 1.08003 * 125.89684 * 180.26952 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6665 -0.0033 5 6 4.7680 1.5451 -0.0072 6 6 6.0195 0.6767 0.1355 7 6 4.6936 2.5287 1.1624 8 6 4.8329 2.3104 -1.3037 9 8 4.0283 2.0840 -2.1826 10 7 5.7850 3.2467 -1.4868 11 6 5.8484 3.9903 -2.7474 12 1 4.8386 4.1560 -3.1227 13 6 6.6484 3.1862 -3.7742 14 6 6.7152 3.9631 -5.0906 15 6 7.3991 5.3110 -4.8532 16 6 6.5991 6.1151 -3.8264 17 1 5.5894 6.2811 -4.2019 18 7 7.2543 7.4054 -3.5987 19 6 6.9959 8.4610 -4.4318 20 1 6.3088 8.3425 -5.2565 21 6 7.6164 9.6839 -4.2157 22 7 8.4534 9.8285 -3.2103 23 14 7.2634 11.1240 -5.3517 24 1 6.2940 10.7049 -6.3957 25 1 6.6895 12.2455 -4.5656 26 1 8.5257 11.5667 -5.9967 27 6 6.5321 5.3384 -2.5105 28 6 3.5346 -0.7322 0.0037 29 7 2.2891 -1.1328 0.0057 30 1 -0.3634 0.0048 1.0277 31 1 -0.3633 0.8877 -0.5179 32 1 -0.3633 -0.8923 -0.5098 33 1 1.9281 2.1193 -0.0004 34 1 6.9050 1.3123 0.1331 35 1 5.9726 0.1232 1.0734 36 1 6.0725 -0.0240 -0.6977 37 1 3.8020 3.1474 1.0607 38 1 4.6467 1.9751 2.1002 39 1 5.5790 3.1645 1.1593 40 1 6.4288 3.4276 -0.7841 41 1 6.1614 2.2259 -3.9430 42 1 7.6583 3.0205 -3.3989 43 1 7.2855 3.3906 -5.8220 44 1 5.7054 4.1292 -5.4660 45 1 8.4089 5.1450 -4.4777 46 1 7.4463 5.8647 -5.7909 47 1 7.8712 7.5120 -2.8577 48 1 8.8873 10.6829 -3.0594 49 1 7.5419 5.1727 -2.1352 50 1 5.9621 5.9113 -1.7790 51 1 4.4053 -1.3711 0.0073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981427076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:50 Heat of formation + Delta-G solvation = 11.612851 kcal Electronic energy + Delta-G solvation = -29357.799153 eV Core-core repulsion = 25485.400747 eV Total energy + Delta-G solvation = -3872.398406 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.37409 -40.98888 -39.32891 -36.42620 -36.16584 -34.71822 -33.69945 -32.89591 -30.84555 -30.24187 -29.32453 -28.28823 -27.21168 -25.71270 -24.77528 -23.27643 -22.76189 -21.81108 -21.54206 -21.03572 -20.06638 -19.10037 -18.13614 -17.43666 -17.26537 -16.47643 -16.24041 -16.04943 -15.77899 -15.39946 -15.27752 -15.13908 -15.02516 -14.81526 -14.75619 -14.23887 -14.04260 -13.59729 -13.55140 -13.44497 -13.36431 -13.22827 -13.13224 -12.90535 -12.89316 -12.82917 -12.37010 -12.22261 -12.10076 -12.00928 -11.95646 -11.92445 -11.61823 -11.49762 -11.42554 -11.32862 -10.86581 -10.52414 -10.32831 -9.94113 -9.29853 -8.98148 -7.93033 -5.20361 0.97833 1.47677 1.48084 1.57788 1.68518 1.76594 1.79598 2.39762 2.58113 3.40398 3.54810 3.66967 3.87083 3.87905 3.92092 4.03043 4.08014 4.19652 4.24440 4.31847 4.34359 4.41895 4.42317 4.49936 4.56697 4.60642 4.65961 4.70892 4.78954 4.80923 4.82757 4.88056 4.98433 5.05149 5.09408 5.15925 5.16791 5.20680 5.24452 5.34344 5.38081 5.43871 5.51981 5.53825 5.58995 5.69352 5.72613 6.13000 6.30183 6.70377 6.75685 7.36433 7.39703 8.12453 8.36340 9.30471 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.002265 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.159380 B =12358.643568 C =12548.065215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.070 3.930 4 C -0.224 4.224 5 C 0.007 3.993 6 C -0.138 4.138 7 C -0.137 4.137 8 C 0.521 3.479 9 O -0.577 6.577 10 N -0.711 5.711 11 C 0.161 3.839 12 H 0.064 0.936 13 C -0.115 4.115 14 C -0.107 4.107 15 C -0.126 4.126 16 C 0.177 3.823 17 H 0.033 0.967 18 N -0.735 5.735 19 C -0.234 4.234 20 H 0.071 0.929 21 C -0.075 4.075 22 N -0.967 5.967 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.294 1.294 27 C -0.113 4.113 28 C 0.052 3.948 29 N -0.335 5.335 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.179 0.821 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.412 0.588 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.374 0.626 48 H 0.250 0.750 49 H 0.076 0.924 50 H 0.062 0.938 51 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 -22.060 11.062 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.077 4.077 4 C -0.236 4.236 5 C 0.003 3.997 6 C -0.196 4.196 7 C -0.194 4.194 8 C 0.308 3.692 9 O -0.456 6.456 10 N -0.363 5.363 11 C 0.055 3.945 12 H 0.082 0.918 13 C -0.153 4.153 14 C -0.145 4.145 15 C -0.166 4.166 16 C 0.068 3.932 17 H 0.052 0.948 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.089 0.911 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.221 1.221 26 H -0.221 1.221 27 C -0.152 4.152 28 C -0.133 4.133 29 N -0.157 5.157 30 H 0.109 0.891 31 H 0.121 0.879 32 H 0.108 0.892 33 H 0.196 0.804 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.249 0.751 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.206 0.794 48 H 0.059 0.941 49 H 0.094 0.906 50 H 0.080 0.920 51 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -11.086 -23.126 10.301 27.638 hybrid contribution 0.838 2.030 -0.344 2.223 sum -10.248 -21.097 9.957 25.480 Atomic orbital electron populations 1.22136 0.72451 1.05471 1.04602 1.48704 1.07764 1.03373 1.56630 1.22470 0.91255 0.93702 1.00243 1.19617 0.93570 0.93478 1.16944 1.19006 0.94347 0.94387 0.91986 1.21885 0.94487 0.99681 1.03504 1.21923 1.02865 0.97971 0.96671 1.21103 0.79553 0.79185 0.89380 1.90676 1.41974 1.66928 1.46017 1.45999 1.33401 1.38687 1.18194 1.20674 0.99179 0.90212 0.84417 0.91797 1.21791 1.00584 0.98069 0.94882 1.21410 1.00553 0.95328 0.97256 1.22094 0.99586 0.95528 0.99425 1.20289 0.94431 0.84741 0.93693 0.94841 1.42577 1.52968 1.07440 1.34487 1.19597 1.19898 0.90301 1.06827 0.91125 1.25476 1.00438 1.00422 1.00405 1.69802 1.34319 1.24785 1.32950 0.85162 0.77092 0.79717 0.78366 1.19376 1.22087 1.22115 1.21853 1.01321 0.94285 0.97752 1.24087 0.95400 0.94757 0.99087 1.77247 1.02474 1.09634 1.26355 0.89143 0.87898 0.89168 0.80419 0.90298 0.89371 0.92548 0.92885 0.90062 0.90409 0.75125 0.92392 0.90637 0.90799 0.92686 0.92679 0.94187 0.79365 0.94088 0.90551 0.91971 0.78334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.10 11.47 127.77 1.47 2.56 16 2 N -0.38 -7.86 4.01 -369.57 -1.48 -9.34 16 3 C 0.07 1.45 10.40 83.54 0.87 2.32 16 4 C -0.22 -4.56 4.18 -20.14 -0.08 -4.65 16 5 C 0.01 0.12 0.80 -53.67 -0.04 0.08 16 6 C -0.14 -1.63 7.40 71.98 0.53 -1.10 16 7 C -0.14 -1.72 8.14 71.98 0.59 -1.14 16 8 C 0.52 12.11 6.40 87.66 0.56 12.67 16 9 O -0.58 -18.61 15.36 -3.05 -0.05 -18.66 16 10 N -0.71 -14.77 4.91 -442.54 -2.17 -16.94 16 11 C 0.16 4.22 2.46 44.99 0.11 4.33 16 12 H 0.06 2.00 7.58 -2.39 -0.02 1.98 16 13 C -0.11 -2.88 5.49 30.59 0.17 -2.71 16 14 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 15 C -0.13 -4.35 5.50 30.59 0.17 -4.18 16 16 C 0.18 6.79 2.77 44.97 0.12 6.91 16 17 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 18 N -0.74 -36.10 5.12 -323.03 -1.65 -37.76 16 19 C -0.23 -12.89 9.93 84.04 0.83 -12.06 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 21 C -0.08 -4.28 5.50 84.86 0.47 -3.82 16 22 N -0.97 -58.34 13.06 21.65 0.28 -58.06 16 23 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 27 C -0.11 -3.38 4.85 30.58 0.15 -3.24 16 28 C 0.05 1.08 10.99 85.24 0.94 2.01 16 29 N -0.34 -8.06 12.58 -57.02 -0.72 -8.78 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 33 H 0.18 3.07 8.01 -2.91 -0.02 3.05 16 34 H 0.08 0.71 7.97 -2.38 -0.02 0.69 16 35 H 0.09 0.75 8.11 -2.39 -0.02 0.73 16 36 H 0.06 0.76 7.76 -2.39 -0.02 0.74 16 37 H 0.05 0.75 7.87 -2.38 -0.02 0.73 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.77 7.27 -2.39 -0.02 0.75 16 40 H 0.41 6.29 7.52 -92.71 -0.70 5.60 16 41 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.37 19.49 7.80 -92.71 -0.72 18.77 16 48 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 51 H 0.20 2.97 7.36 -2.91 -0.02 2.95 16 Total: -1.00 -74.69 407.28 2.76 -71.93 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.50 Total: 34.28 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 7.03 Total: -4.77 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -5.74 Total: -130.88 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.05 Total: -18.66 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -74.69 2.76 -71.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981427076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.539 kcal (2) G-P(sol) polarization free energy of solvation -74.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds