Wall clock time and date at job start Tue Mar 31 2020 20:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34950 * 126.03791 * 2 1 4 4 C 1.35315 * 107.74690 * 179.97438 * 3 2 1 5 5 C 1.50691 * 126.03887 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47505 * 354.52635 * 5 4 3 7 7 C 1.52998 * 109.47076 * 234.52347 * 5 4 3 8 8 C 1.50700 * 109.47246 * 114.52806 * 5 4 3 9 9 O 1.21287 * 119.99675 * 354.44039 * 8 5 4 10 10 N 1.34777 * 120.00157 * 174.44675 * 8 5 4 11 11 C 1.46503 * 119.99997 * 179.97438 * 10 8 5 12 12 H 1.09005 * 109.47019 * 35.00306 * 11 10 8 13 13 C 1.52995 * 109.47137 * 275.00066 * 11 10 8 14 14 C 1.53007 * 109.47243 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46711 * 59.99755 * 14 13 11 16 16 C 1.52995 * 109.47467 * 300.00108 * 15 14 13 17 17 H 1.08996 * 109.47560 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.47012 * 300.00312 * 16 15 14 19 19 C 1.36936 * 119.99973 * 274.72039 * 18 16 15 20 20 H 1.07998 * 120.00309 * 0.28100 * 19 18 16 21 21 C 1.38816 * 119.99996 * 180.27394 * 19 18 16 22 22 N 1.31614 * 119.99936 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47100 * 89.99515 * 23 21 19 25 25 H 1.48495 * 109.47054 * 209.99830 * 23 21 19 26 26 H 1.48498 * 109.46910 * 329.99989 * 23 21 19 27 27 C 1.52995 * 109.47208 * 59.99892 * 16 15 14 28 28 C 1.39866 * 107.91932 * 0.26746 * 4 3 2 29 29 N 1.30840 * 108.20473 * 359.55059 * 28 4 3 30 30 H 1.09004 * 109.46745 * 89.99367 * 1 2 3 31 31 H 1.08997 * 109.47100 * 209.99387 * 1 2 3 32 32 H 1.08996 * 109.46656 * 330.00033 * 1 2 3 33 33 H 1.08006 * 126.12669 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47409 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46649 * 299.99926 * 6 5 4 36 36 H 1.08997 * 109.47005 * 59.99913 * 6 5 4 37 37 H 1.09001 * 109.47377 * 300.00180 * 7 5 4 38 38 H 1.09001 * 109.47426 * 60.00384 * 7 5 4 39 39 H 1.09005 * 109.47471 * 179.97438 * 7 5 4 40 40 H 0.96995 * 119.99892 * 359.97438 * 10 8 5 41 41 H 1.08997 * 109.47291 * 299.99770 * 13 11 10 42 42 H 1.09003 * 109.47090 * 60.00025 * 13 11 10 43 43 H 1.08991 * 109.47497 * 179.97438 * 14 13 11 44 44 H 1.08997 * 109.46848 * 300.00114 * 14 13 11 45 45 H 1.09001 * 109.46343 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.47172 * 60.00557 * 15 14 13 47 47 H 0.97002 * 120.00011 * 95.00466 * 18 16 15 48 48 H 0.97003 * 120.00355 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.47051 * 60.00334 * 27 16 15 50 50 H 1.09000 * 109.47597 * 179.97438 * 27 16 15 51 51 H 1.07999 * 125.90247 * 179.73643 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 6 4.3451 3.0093 -0.1362 7 6 5.6710 1.1627 -1.1730 8 6 5.5194 1.3588 1.2943 9 8 5.0512 0.6667 2.1733 10 7 6.7116 1.9613 1.4738 11 6 7.4417 1.7805 2.7310 12 1 7.2776 0.7696 3.1043 13 6 6.9399 2.7930 3.7624 14 6 7.7021 2.6037 5.0755 15 6 9.1971 2.8207 4.8332 16 6 9.6989 1.8083 3.8018 17 1 10.7641 1.9626 3.6296 18 7 9.4776 0.4497 4.3035 19 6 10.4028 -0.1356 5.1261 20 1 11.2934 0.4060 5.4088 21 6 10.1958 -1.4250 5.5968 22 7 11.0848 -1.9874 6.3879 23 14 8.6557 -2.3620 5.1075 24 1 8.9158 -3.1254 3.8605 25 1 8.2819 -3.3021 6.1945 26 1 7.5449 -1.4034 4.8783 27 6 8.9368 1.9974 2.4888 28 6 3.5347 -0.7321 -0.0053 29 7 2.2892 -1.1328 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3632 0.8900 0.5138 33 1 1.9282 2.1194 0.0004 34 1 5.2306 3.6448 -0.1361 35 1 3.8017 3.1441 -1.0715 36 1 3.7018 3.2818 0.7004 37 1 5.9723 0.1198 -1.0750 38 1 5.1277 1.2976 -2.1082 39 1 6.5564 1.7986 -1.1728 40 1 7.0861 2.5146 0.7707 41 1 7.1042 3.8037 3.3890 42 1 5.8749 2.6380 3.9352 43 1 7.3449 3.3253 5.8102 44 1 7.5374 1.5929 5.4487 45 1 9.7400 2.6855 5.7687 46 1 9.3617 3.8315 4.4601 47 1 8.6777 -0.0368 4.0496 48 1 10.9404 -2.8885 6.7165 49 1 9.1014 3.0083 2.1155 50 1 9.2946 1.2764 1.7538 51 1 4.4054 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981427077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:59 Heat of formation + Delta-G solvation = 43.317311 kcal Electronic energy + Delta-G solvation = -30146.429635 eV Core-core repulsion = 26275.406037 eV Total energy + Delta-G solvation = -3871.023598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.56218 -39.97099 -38.23193 -35.54717 -34.53549 -33.21318 -32.83619 -31.13639 -29.89149 -29.15154 -28.34048 -27.69635 -26.70413 -23.97304 -23.28218 -22.09933 -21.84462 -21.04840 -20.70468 -19.45041 -18.47617 -17.68298 -17.41527 -16.52389 -15.96093 -15.53240 -15.04823 -14.80641 -14.54204 -14.42972 -14.21319 -13.95576 -13.91743 -13.68905 -13.29373 -12.99351 -12.88717 -12.73352 -12.71695 -12.50353 -12.35211 -12.29919 -12.16797 -12.11645 -11.79427 -11.55627 -11.32110 -10.97383 -10.83563 -10.70424 -10.58822 -10.27327 -10.16345 -10.07513 -9.84516 -9.52232 -9.49013 -9.39015 -8.90594 -8.74207 -8.50626 -7.20387 -5.71577 -3.06346 1.75590 2.37695 2.65424 2.79964 3.38893 3.45846 3.52415 3.55509 4.25945 4.51007 4.58097 4.66309 4.68847 4.77953 4.84548 4.90918 5.02708 5.09030 5.15180 5.19272 5.29555 5.39509 5.45024 5.47632 5.51687 5.55368 5.59007 5.64901 5.65364 5.75679 5.81209 5.83249 5.88904 6.02371 6.03332 6.05096 6.10851 6.30414 6.37291 6.46209 6.52865 6.67700 6.73448 6.78921 6.84678 6.94746 7.02503 7.59240 7.66112 8.05098 8.41172 8.47758 9.26783 9.99862 10.19186 11.46772 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.003363 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.580898 B = 8323.477184 C = 9469.117631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.380 5.380 3 C 0.060 3.940 4 C -0.207 4.207 5 C -0.001 4.001 6 C -0.139 4.139 7 C -0.137 4.137 8 C 0.518 3.482 9 O -0.526 6.526 10 N -0.725 5.725 11 C 0.144 3.856 12 H 0.089 0.911 13 C -0.120 4.120 14 C -0.111 4.111 15 C -0.135 4.135 16 C 0.185 3.815 17 H 0.060 0.940 18 N -0.746 5.746 19 C -0.241 4.241 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.935 5.935 23 Si 0.876 3.124 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.274 1.274 27 C -0.131 4.131 28 C 0.076 3.924 29 N -0.299 5.299 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.171 0.829 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.395 0.605 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.066 0.934 46 H 0.046 0.954 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.065 0.935 50 H 0.069 0.931 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.031 14.105 -18.419 29.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.162 5.162 3 C -0.086 4.086 4 C -0.219 4.219 5 C -0.006 4.006 6 C -0.197 4.197 7 C -0.195 4.195 8 C 0.303 3.697 9 O -0.400 6.400 10 N -0.376 5.376 11 C 0.040 3.960 12 H 0.107 0.893 13 C -0.159 4.159 14 C -0.149 4.149 15 C -0.175 4.175 16 C 0.075 3.925 17 H 0.078 0.922 18 N -0.390 5.390 19 C -0.370 4.370 20 H 0.108 0.892 21 C -0.189 4.189 22 N -0.583 5.583 23 Si 0.706 3.294 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.200 1.200 27 C -0.170 4.170 28 C -0.111 4.111 29 N -0.120 5.120 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.188 0.812 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.084 0.916 50 H 0.087 0.913 51 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -19.142 12.511 -17.623 28.870 hybrid contribution -0.432 0.187 -0.437 0.642 sum -19.574 12.698 -18.059 29.504 Atomic orbital electron populations 1.21808 0.74418 1.04454 1.03077 1.48375 1.06482 1.03906 1.57469 1.22186 0.90701 0.93193 1.02523 1.19372 0.92821 0.93516 1.16154 1.19010 0.92505 0.95432 0.93639 1.21865 1.02211 0.93087 1.02534 1.21867 0.98536 1.02377 0.96726 1.20495 0.81160 0.79347 0.88722 1.90742 1.67155 1.38115 1.44009 1.46168 1.20883 1.51722 1.18838 1.21025 0.90954 1.00827 0.83168 0.89294 1.21850 0.99826 0.98284 0.95952 1.21371 0.95471 1.02482 0.95567 1.22150 0.95784 0.98142 1.01473 1.20127 0.97066 0.85671 0.89668 0.92212 1.42879 1.24461 1.12761 1.58897 1.19064 1.00472 0.97059 1.20449 0.89176 1.24628 0.97659 0.97085 0.99574 1.69694 1.35573 1.15205 1.37835 0.86678 0.84360 0.80390 0.77930 1.21120 1.21764 1.19974 1.22117 0.93538 1.01464 0.99854 1.23636 0.94994 0.94450 0.98018 1.77375 1.01631 1.08037 1.24933 0.90930 0.89349 0.89672 0.81193 0.91659 0.91319 0.92019 0.91810 0.91431 0.91878 0.77144 0.92497 0.92393 0.93012 0.90970 0.91538 0.93501 0.80463 0.93133 0.91596 0.91277 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.66 11.47 59.85 0.69 1.35 16 2 N -0.38 -4.20 4.01 -68.16 -0.27 -4.48 16 3 C 0.06 0.61 10.45 -17.22 -0.18 0.43 16 4 C -0.21 -2.43 4.14 -105.06 -0.43 -2.87 16 5 C 0.00 -0.01 0.81 -156.82 -0.13 -0.14 16 6 C -0.14 -0.98 7.37 37.16 0.27 -0.70 16 7 C -0.14 -1.10 8.16 37.16 0.30 -0.80 16 8 C 0.52 7.13 6.41 -10.98 -0.07 7.06 16 9 O -0.53 -9.93 15.38 5.55 0.09 -9.85 16 10 N -0.73 -8.79 4.91 -53.80 -0.26 -9.05 16 11 C 0.14 2.20 2.28 -67.93 -0.16 2.05 16 12 H 0.09 1.75 5.94 -51.93 -0.31 1.44 16 13 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 14 C -0.11 -1.85 5.77 -26.73 -0.15 -2.01 16 15 C -0.14 -2.28 5.61 -26.73 -0.15 -2.43 16 16 C 0.18 3.39 3.10 -67.93 -0.21 3.18 16 17 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 18 N -0.75 -17.43 4.08 -53.43 -0.22 -17.65 16 19 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 22 N -0.94 -29.80 13.97 55.49 0.78 -29.02 16 23 Si 0.88 23.24 27.74 -169.99 -4.71 18.52 16 24 H -0.28 -7.51 7.11 56.52 0.40 -7.10 16 25 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 26 H -0.27 -7.10 6.52 56.52 0.37 -6.73 16 27 C -0.13 -1.90 5.08 -26.73 -0.14 -2.03 16 28 C 0.08 1.03 11.04 -17.37 -0.19 0.84 16 29 N -0.30 -4.25 12.58 30.62 0.39 -3.86 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.17 1.12 7.27 -52.48 -0.38 0.73 16 34 H 0.06 0.38 7.97 -51.93 -0.41 -0.04 16 35 H 0.07 0.37 8.10 -51.92 -0.42 -0.05 16 36 H 0.06 0.47 7.74 -51.93 -0.40 0.07 16 37 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.40 7.27 -51.93 -0.38 0.02 16 40 H 0.39 3.46 7.52 -40.82 -0.31 3.15 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.45 7.60 -51.93 -0.39 1.06 16 45 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.36 8.64 3.92 -40.82 -0.16 8.48 16 48 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 49 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 LS Contribution 399.81 15.07 6.03 6.03 Total: -1.00 -37.05 399.81 -7.81 -44.86 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -8.66 Total: 9.33 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.95 Total: -4.83 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: 0.40 Total: -64.07 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.71 Total: 18.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.05 -7.81 -44.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981427077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.178 kcal (2) G-P(sol) polarization free energy of solvation -37.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds