Wall clock time and date at job start Tue Mar 31 2020 20:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34950 * 126.03791 * 2 1 4 4 C 1.35315 * 107.74690 * 179.97438 * 3 2 1 5 5 C 1.50691 * 126.03887 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47505 * 354.52635 * 5 4 3 7 7 C 1.52998 * 109.47076 * 234.52347 * 5 4 3 8 8 C 1.50700 * 109.47246 * 114.52806 * 5 4 3 9 9 O 1.21287 * 119.99675 * 354.44039 * 8 5 4 10 10 N 1.34777 * 120.00157 * 174.44675 * 8 5 4 11 11 C 1.46503 * 119.99997 * 179.97438 * 10 8 5 12 12 H 1.09005 * 109.47019 * 35.00306 * 11 10 8 13 13 C 1.52995 * 109.47137 * 275.00066 * 11 10 8 14 14 C 1.53007 * 109.47243 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46711 * 59.99755 * 14 13 11 16 16 C 1.52995 * 109.47467 * 300.00108 * 15 14 13 17 17 H 1.08996 * 109.47560 * 180.02562 * 16 15 14 18 18 N 1.46504 * 109.47012 * 300.00312 * 16 15 14 19 19 C 1.36936 * 119.99973 * 274.72039 * 18 16 15 20 20 H 1.07998 * 120.00309 * 0.28100 * 19 18 16 21 21 C 1.38816 * 119.99996 * 180.27394 * 19 18 16 22 22 N 1.31614 * 119.99936 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00104 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47100 * 89.99515 * 23 21 19 25 25 H 1.48495 * 109.47054 * 209.99830 * 23 21 19 26 26 H 1.48498 * 109.46910 * 329.99989 * 23 21 19 27 27 C 1.52995 * 109.47208 * 59.99892 * 16 15 14 28 28 C 1.39866 * 107.91932 * 0.26746 * 4 3 2 29 29 N 1.30840 * 108.20473 * 359.55059 * 28 4 3 30 30 H 1.09004 * 109.46745 * 89.99367 * 1 2 3 31 31 H 1.08997 * 109.47100 * 209.99387 * 1 2 3 32 32 H 1.08996 * 109.46656 * 330.00033 * 1 2 3 33 33 H 1.08006 * 126.12669 * 0.02562 * 3 2 1 34 34 H 1.08995 * 109.47409 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46649 * 299.99926 * 6 5 4 36 36 H 1.08997 * 109.47005 * 59.99913 * 6 5 4 37 37 H 1.09001 * 109.47377 * 300.00180 * 7 5 4 38 38 H 1.09001 * 109.47426 * 60.00384 * 7 5 4 39 39 H 1.09005 * 109.47471 * 179.97438 * 7 5 4 40 40 H 0.96995 * 119.99892 * 359.97438 * 10 8 5 41 41 H 1.08997 * 109.47291 * 299.99770 * 13 11 10 42 42 H 1.09003 * 109.47090 * 60.00025 * 13 11 10 43 43 H 1.08991 * 109.47497 * 179.97438 * 14 13 11 44 44 H 1.08997 * 109.46848 * 300.00114 * 14 13 11 45 45 H 1.09001 * 109.46343 * 180.02562 * 15 14 13 46 46 H 1.08997 * 109.47172 * 60.00557 * 15 14 13 47 47 H 0.97002 * 120.00011 * 95.00466 * 18 16 15 48 48 H 0.97003 * 120.00355 * 180.02562 * 22 21 19 49 49 H 1.09007 * 109.47051 * 60.00334 * 27 16 15 50 50 H 1.09000 * 109.47597 * 179.97438 * 27 16 15 51 51 H 1.07999 * 125.90247 * 179.73643 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5438 0.6666 0.0006 5 6 4.7680 1.5453 0.0013 6 6 4.3451 3.0093 -0.1362 7 6 5.6710 1.1627 -1.1730 8 6 5.5194 1.3588 1.2943 9 8 5.0512 0.6667 2.1733 10 7 6.7116 1.9613 1.4738 11 6 7.4417 1.7805 2.7310 12 1 7.2776 0.7696 3.1043 13 6 6.9399 2.7930 3.7624 14 6 7.7021 2.6037 5.0755 15 6 9.1971 2.8207 4.8332 16 6 9.6989 1.8083 3.8018 17 1 10.7641 1.9626 3.6296 18 7 9.4776 0.4497 4.3035 19 6 10.4028 -0.1356 5.1261 20 1 11.2934 0.4060 5.4088 21 6 10.1958 -1.4250 5.5968 22 7 11.0848 -1.9874 6.3879 23 14 8.6557 -2.3620 5.1075 24 1 8.9158 -3.1254 3.8605 25 1 8.2819 -3.3021 6.1945 26 1 7.5449 -1.4034 4.8783 27 6 8.9368 1.9974 2.4888 28 6 3.5347 -0.7321 -0.0053 29 7 2.2892 -1.1328 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3632 0.8900 0.5138 33 1 1.9282 2.1194 0.0004 34 1 5.2306 3.6448 -0.1361 35 1 3.8017 3.1441 -1.0715 36 1 3.7018 3.2818 0.7004 37 1 5.9723 0.1198 -1.0750 38 1 5.1277 1.2976 -2.1082 39 1 6.5564 1.7986 -1.1728 40 1 7.0861 2.5146 0.7707 41 1 7.1042 3.8037 3.3890 42 1 5.8749 2.6380 3.9352 43 1 7.3449 3.3253 5.8102 44 1 7.5374 1.5929 5.4487 45 1 9.7400 2.6855 5.7687 46 1 9.3617 3.8315 4.4601 47 1 8.6777 -0.0368 4.0496 48 1 10.9404 -2.8885 6.7165 49 1 9.1014 3.0083 2.1155 50 1 9.2946 1.2764 1.7538 51 1 4.4054 -1.3710 -0.0104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981427077.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:57 Heat of formation + Delta-G solvation = 16.943758 kcal Electronic energy + Delta-G solvation = -30147.573278 eV Core-core repulsion = 26275.406037 eV Total energy + Delta-G solvation = -3872.167241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.40455 -41.07096 -39.53295 -36.41639 -36.05976 -34.66905 -33.78894 -33.01303 -30.92794 -30.42974 -29.67377 -28.26268 -27.35265 -25.41874 -24.75326 -23.34415 -23.09961 -21.96559 -21.69278 -20.52991 -19.91720 -19.58693 -18.30616 -17.43361 -17.15634 -16.53283 -16.29965 -16.10706 -15.87221 -15.74377 -15.34466 -15.17038 -14.98240 -14.85934 -14.57609 -14.16569 -14.07780 -13.73593 -13.57229 -13.49869 -13.43538 -13.26758 -13.12018 -13.00764 -12.97204 -12.92022 -12.51702 -12.44670 -12.22096 -12.13557 -11.95416 -11.86403 -11.57955 -11.47659 -11.40910 -11.20843 -10.88652 -10.54740 -10.35407 -9.94315 -9.32701 -9.26942 -8.04566 -5.32916 0.94939 1.28922 1.33435 1.37795 1.67668 1.74193 1.77548 2.39731 2.42439 3.28310 3.55616 3.62557 3.72231 3.85632 3.94581 3.96481 4.06853 4.14523 4.17340 4.25625 4.34428 4.39979 4.43003 4.43247 4.58093 4.66625 4.68818 4.77232 4.79497 4.81327 4.83564 4.88461 4.95931 4.99893 5.04656 5.11957 5.14242 5.19513 5.29498 5.32813 5.43060 5.43953 5.50216 5.60408 5.63059 5.66527 5.81543 6.17034 6.22206 6.70960 6.72409 7.08816 7.43202 7.88687 8.03626 9.17736 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.003363 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.580898 B = 8323.477184 C = 9469.117631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.069 3.931 4 C -0.226 4.226 5 C 0.008 3.992 6 C -0.137 4.137 7 C -0.136 4.136 8 C 0.514 3.486 9 O -0.585 6.585 10 N -0.707 5.707 11 C 0.148 3.852 12 H 0.037 0.963 13 C -0.109 4.109 14 C -0.110 4.110 15 C -0.127 4.127 16 C 0.170 3.830 17 H 0.058 0.942 18 N -0.751 5.751 19 C -0.211 4.211 20 H 0.068 0.932 21 C -0.057 4.057 22 N -0.982 5.982 23 Si 0.934 3.066 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.273 1.273 27 C -0.117 4.117 28 C 0.051 3.949 29 N -0.342 5.342 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.211 0.789 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.416 0.584 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.069 0.931 44 H 0.025 0.975 45 H 0.036 0.964 46 H 0.091 0.909 47 H 0.359 0.641 48 H 0.255 0.745 49 H 0.115 0.885 50 H 0.067 0.933 51 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 18.247 -21.344 34.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.077 4.077 4 C -0.238 4.238 5 C 0.003 3.997 6 C -0.194 4.194 7 C -0.193 4.193 8 C 0.301 3.699 9 O -0.464 6.464 10 N -0.360 5.360 11 C 0.043 3.957 12 H 0.056 0.944 13 C -0.147 4.147 14 C -0.148 4.148 15 C -0.167 4.167 16 C 0.063 3.937 17 H 0.076 0.924 18 N -0.395 5.395 19 C -0.343 4.343 20 H 0.086 0.914 21 C -0.249 4.249 22 N -0.634 5.634 23 Si 0.764 3.236 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.198 1.198 27 C -0.156 4.156 28 C -0.134 4.134 29 N -0.165 5.165 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.228 0.772 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.254 0.746 41 H 0.115 0.885 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.044 0.956 45 H 0.055 0.945 46 H 0.109 0.891 47 H 0.192 0.808 48 H 0.065 0.935 49 H 0.134 0.866 50 H 0.086 0.914 51 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -20.778 16.721 -20.620 33.712 hybrid contribution 0.052 -1.001 0.473 1.108 sum -20.726 15.720 -20.147 32.903 Atomic orbital electron populations 1.22187 0.72015 1.05661 1.04782 1.48774 1.07916 1.03386 1.56331 1.22811 0.90020 0.94503 1.00411 1.19679 0.94452 0.92775 1.16906 1.19037 0.91587 0.97348 0.91685 1.21916 1.03362 0.90513 1.03608 1.21895 0.99268 1.01593 0.96580 1.21302 0.81179 0.77999 0.89420 1.90725 1.68657 1.40656 1.46364 1.45918 1.20194 1.51551 1.18290 1.20748 0.91945 0.98371 0.84652 0.94450 1.21750 0.98354 1.00036 0.94603 1.21336 0.95927 1.00273 0.97272 1.22037 0.95153 0.99855 0.99629 1.20504 0.97905 0.83259 0.92072 0.92406 1.43006 1.23314 1.14926 1.58250 1.19110 0.99879 0.96351 1.18920 0.91438 1.25214 1.00297 0.98491 1.00892 1.69826 1.37671 1.15607 1.40292 0.85729 0.81469 0.79043 0.77322 1.20722 1.22373 1.19845 1.21999 0.91950 1.04336 0.97301 1.23691 0.94798 0.95897 0.99042 1.77269 1.02336 1.10241 1.26612 0.88945 0.89978 0.86677 0.77214 0.89706 0.88900 0.92466 0.93884 0.89783 0.89627 0.74585 0.88537 0.93951 0.91266 0.95579 0.94498 0.89053 0.80755 0.93541 0.86646 0.91433 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 11.47 127.77 1.47 2.46 16 2 N -0.38 -7.97 4.01 -369.55 -1.48 -9.45 16 3 C 0.07 1.24 10.45 83.54 0.87 2.11 16 4 C -0.23 -5.07 4.14 -20.15 -0.08 -5.16 16 5 C 0.01 0.14 0.81 -53.68 -0.04 0.09 16 6 C -0.14 -1.28 7.37 71.98 0.53 -0.75 16 7 C -0.14 -1.82 8.16 71.98 0.59 -1.24 16 8 C 0.51 13.48 6.41 87.66 0.56 14.04 16 9 O -0.59 -22.59 15.38 -3.05 -0.05 -22.64 16 10 N -0.71 -15.15 4.91 -442.53 -2.17 -17.33 16 11 C 0.15 4.24 2.28 44.99 0.10 4.35 16 12 H 0.04 1.49 5.94 -2.38 -0.01 1.48 16 13 C -0.11 -2.94 5.49 30.59 0.17 -2.77 16 14 C -0.11 -3.53 5.77 30.60 0.18 -3.35 16 15 C -0.13 -4.02 5.61 30.59 0.17 -3.85 16 16 C 0.17 5.99 3.10 44.99 0.14 6.13 16 17 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 18 N -0.75 -35.52 4.08 -322.95 -1.32 -36.84 16 19 C -0.21 -12.18 10.41 84.03 0.87 -11.30 16 20 H 0.07 4.16 8.06 -2.91 -0.02 4.13 16 21 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 22 N -0.98 -64.90 13.97 21.65 0.30 -64.60 16 23 Si 0.93 50.26 27.74 68.60 1.90 52.16 16 24 H -0.28 -14.76 7.11 99.48 0.71 -14.06 16 25 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 26 H -0.27 -14.41 6.52 99.48 0.65 -13.76 16 27 C -0.12 -3.02 5.08 30.59 0.16 -2.86 16 28 C 0.05 1.45 11.04 85.23 0.94 2.39 16 29 N -0.34 -10.00 12.58 -57.03 -0.72 -10.71 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.21 1.81 7.27 -2.91 -0.02 1.79 16 34 H 0.08 0.49 7.97 -2.39 -0.02 0.47 16 35 H 0.09 0.47 8.10 -2.38 -0.02 0.45 16 36 H 0.06 0.62 7.74 -2.39 -0.02 0.60 16 37 H 0.04 0.76 7.92 -2.39 -0.02 0.74 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 0.73 7.27 -2.38 -0.02 0.71 16 40 H 0.42 5.29 7.52 -92.71 -0.70 4.59 16 41 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.03 1.06 7.60 -2.39 -0.02 1.04 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.36 17.53 3.92 -92.71 -0.36 17.16 16 48 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 49 H 0.12 1.91 8.14 -2.38 -0.02 1.89 16 50 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.17 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -88.18 399.81 3.36 -84.82 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -0.20 Total: 27.34 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 7.09 Total: -2.76 kcal Atomic # 7 Polarization: -133.53 SS G_CDS: -5.39 Total: -138.92 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 1.90 Total: 52.16 kcal Total: -88.18 3.36 -84.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981427077.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.768 kcal (2) G-P(sol) polarization free energy of solvation -88.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds