Wall clock time and date at job start Tue Mar 31 2020 19:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47060 * 2 1 4 4 C 1.50696 * 109.47488 * 119.99804 * 2 1 3 5 5 C 1.39677 * 126.07160 * 275.26913 * 4 2 1 6 6 C 1.38401 * 105.36104 * 180.10547 * 5 4 2 7 7 C 1.47167 * 126.88653 * 179.91726 * 6 5 4 8 8 O 1.21618 * 120.00181 * 184.81615 * 7 6 5 9 9 N 1.34780 * 119.99765 * 4.81415 * 7 6 5 10 10 C 1.46494 * 120.00227 * 174.39431 * 9 7 6 11 11 H 1.09007 * 109.46635 * 35.00285 * 10 9 7 12 12 C 1.52995 * 109.47369 * 275.00348 * 10 9 7 13 13 C 1.52995 * 109.47044 * 299.99866 * 12 10 9 14 14 C 1.53005 * 109.46841 * 299.99805 * 13 12 10 15 15 C 1.52995 * 109.47142 * 60.00255 * 14 13 12 16 16 H 1.09004 * 109.47133 * 59.99719 * 15 14 13 17 17 N 1.46496 * 109.47296 * 179.97438 * 15 14 13 18 18 C 1.36940 * 120.00177 * 275.00485 * 17 15 14 19 19 H 1.07999 * 119.99520 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99847 * 179.72332 * 18 17 15 21 21 N 1.31627 * 120.00312 * 0.27145 * 20 18 17 22 22 Si 1.86806 * 119.99978 * 180.26898 * 20 18 17 23 23 H 1.48503 * 109.46809 * 60.00310 * 22 20 18 24 24 H 1.48496 * 109.47016 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47304 * 300.00230 * 22 20 18 26 26 C 1.52996 * 109.47337 * 154.99574 * 10 9 7 27 27 N 1.36596 * 106.23201 * 359.65339 * 6 5 4 28 28 C 1.46501 * 125.19323 * 180.25216 * 27 6 5 29 29 N 1.28439 * 109.62210 * 0.22470 * 27 6 5 30 30 H 1.09000 * 109.47014 * 299.99726 * 1 2 3 31 31 H 1.08995 * 109.47099 * 60.00084 * 1 2 3 32 32 H 1.09006 * 109.47188 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47485 * 240.00183 * 2 1 3 34 34 H 1.09001 * 109.47465 * 300.00113 * 3 2 1 35 35 H 1.09004 * 109.47392 * 59.99988 * 3 2 1 36 36 H 1.09007 * 109.47314 * 180.02562 * 3 2 1 37 37 H 1.08002 * 127.31993 * 0.02562 * 5 4 2 38 38 H 0.97005 * 119.99998 * 354.39461 * 9 7 6 39 39 H 1.09005 * 109.47254 * 179.97438 * 12 10 9 40 40 H 1.08997 * 109.47130 * 60.00026 * 12 10 9 41 41 H 1.09007 * 109.46709 * 180.02562 * 13 12 10 42 42 H 1.08990 * 109.47368 * 59.99975 * 13 12 10 43 43 H 1.08996 * 109.47196 * 299.99788 * 14 13 12 44 44 H 1.09000 * 109.46644 * 180.02562 * 14 13 12 45 45 H 0.97002 * 119.99899 * 94.99890 * 17 15 14 46 46 H 0.97002 * 119.99959 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.47573 * 300.01101 * 26 10 9 48 48 H 1.08996 * 109.47125 * 180.02562 * 26 10 9 49 49 H 1.08998 * 109.47526 * 90.46328 * 28 27 6 50 50 H 1.09000 * 109.47214 * 210.46623 * 28 27 6 51 51 H 1.09001 * 109.46872 * 330.46666 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.2088 -0.1417 2.4939 6 6 2.6851 -1.1659 3.2937 7 6 3.0336 -1.0829 4.7211 8 8 3.5256 -2.0423 5.2837 9 7 2.8075 0.0564 5.4048 10 6 3.0389 0.1013 6.8506 11 1 3.8935 -0.5272 7.1014 12 6 1.7968 -0.4114 7.5821 13 6 0.5973 0.4707 7.2301 14 6 0.8818 1.9123 7.6567 15 6 2.1240 2.4249 6.9252 16 1 1.9517 2.3916 5.8494 17 7 2.3960 3.8054 7.3332 18 6 1.7594 4.8429 6.7058 19 1 1.0571 4.6434 5.9100 20 6 2.0129 6.1505 7.0963 21 7 2.8692 6.3936 8.0659 22 14 1.1389 7.5655 6.2456 23 1 -0.3284 7.4172 6.4196 24 1 1.5803 8.8511 6.8434 25 1 1.4695 7.5528 4.7979 26 6 3.3235 1.5427 7.2772 27 7 2.7612 -2.2708 2.4941 28 6 3.2130 -3.5958 2.9258 29 7 2.3758 -1.9709 1.3062 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 2.0159 0.8805 2.7847 38 1 2.4916 0.8468 4.9394 39 1 1.9692 -0.3784 8.6579 40 1 1.5942 -1.4383 7.2783 41 1 -0.2876 0.1057 7.7516 42 1 0.4251 0.4374 6.1544 43 1 1.0540 1.9456 8.7324 44 1 0.0271 2.5406 7.4062 45 1 3.0270 3.9845 8.0477 46 1 3.0461 7.3075 8.3390 47 1 4.2084 1.9080 6.7560 48 1 3.4961 1.5760 8.3529 49 1 2.3585 -4.1751 3.2754 50 1 3.6824 -4.1106 2.0874 51 1 3.9345 -3.4877 3.7357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981434504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:49 Heat of formation + Delta-G solvation = 28.748787 kcal Electronic energy + Delta-G solvation = -29811.082461 eV Core-core repulsion = 25939.427124 eV Total energy + Delta-G solvation = -3871.655336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.69679 -39.99500 -37.94267 -36.09918 -34.57777 -33.32718 -32.39642 -31.32372 -31.09513 -29.34229 -27.89868 -27.31737 -26.89258 -24.03970 -23.60269 -22.78955 -22.02703 -21.11460 -20.70313 -19.43781 -18.85665 -17.96107 -17.12413 -16.44301 -16.29880 -15.55316 -15.41785 -14.91387 -14.64302 -14.43359 -14.35348 -14.12833 -13.77875 -13.72926 -13.51132 -13.42232 -13.07870 -12.72363 -12.65965 -12.49939 -12.22977 -12.11813 -11.94061 -11.78370 -11.57104 -11.35028 -11.29230 -11.03290 -10.89628 -10.82117 -10.64576 -10.42789 -10.24902 -10.22247 -10.08483 -9.78879 -9.56755 -9.29959 -9.00044 -8.96762 -8.87382 -7.00523 -5.80351 -3.09607 1.16310 2.24612 2.42731 3.12906 3.19886 3.41137 3.45953 3.46902 4.20043 4.45351 4.54365 4.70745 4.83984 4.97458 4.98362 5.02741 5.03879 5.12604 5.15281 5.23358 5.34318 5.41810 5.44978 5.51582 5.52151 5.54373 5.64414 5.71277 5.72888 5.78369 5.81931 5.88237 5.92020 6.00996 6.04536 6.10391 6.17453 6.18957 6.24320 6.36534 6.44853 6.51946 6.56501 6.60477 6.67243 6.89788 7.04352 7.42776 7.65105 7.93864 8.08618 8.37940 9.49254 10.06239 10.40608 11.42093 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003526 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.343763 B = 7940.039330 C =10009.667729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.009 4.009 3 C -0.146 4.146 4 C 0.033 3.967 5 C -0.179 4.179 6 C -0.036 4.036 7 C 0.592 3.408 8 O -0.549 6.549 9 N -0.699 5.699 10 C 0.152 3.848 11 H 0.088 0.912 12 C -0.127 4.127 13 C -0.116 4.116 14 C -0.137 4.137 15 C 0.181 3.819 16 H 0.041 0.959 17 N -0.724 5.724 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.134 4.134 27 N -0.260 5.260 28 C 0.085 3.915 29 N -0.279 5.279 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.161 0.839 38 H 0.407 0.593 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.648 -17.502 -11.249 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 C -0.204 4.204 4 C -0.124 4.124 5 C -0.208 4.208 6 C -0.164 4.164 7 C 0.378 3.622 8 O -0.428 6.428 9 N -0.351 5.351 10 C 0.048 3.952 11 H 0.106 0.894 12 C -0.166 4.166 13 C -0.155 4.155 14 C -0.177 4.177 15 C 0.070 3.930 16 H 0.059 0.941 17 N -0.364 5.364 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.173 4.173 27 N -0.046 5.046 28 C -0.055 4.055 29 N -0.112 5.112 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.179 0.821 38 H 0.244 0.756 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.218 0.782 46 H 0.066 0.934 47 H 0.089 0.911 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.238 -19.176 -11.481 22.384 hybrid contribution -0.558 1.920 0.154 2.006 sum -1.797 -17.256 -11.327 20.719 Atomic orbital electron populations 1.21822 0.93939 1.01999 1.02281 1.19417 0.95629 0.95063 0.92758 1.21851 1.01421 0.94536 1.02569 1.21933 1.04059 0.90029 0.96343 1.22135 1.05994 0.99763 0.92934 1.21421 1.11566 0.89207 0.94223 1.16899 0.78032 0.83559 0.83742 1.90738 1.44842 1.36985 1.70226 1.45912 1.66896 1.12932 1.09379 1.21037 0.98163 0.97939 0.78050 0.89406 1.21908 0.95256 0.99002 1.00400 1.21516 0.96890 0.96252 1.00801 1.22291 1.00778 0.93779 1.00881 1.20141 0.91167 0.85431 0.96213 0.94112 1.42406 1.51688 0.99130 1.43220 1.19168 1.18776 0.85816 1.13421 0.91252 1.24730 0.99791 0.97321 0.98914 1.69649 1.37811 1.19477 1.31107 0.86304 0.79144 0.82082 0.78872 1.21285 1.21721 1.21213 1.22141 1.00171 0.92569 1.02400 1.45495 1.44696 1.09502 1.04948 1.22352 1.02002 0.78771 1.02388 1.73102 1.17274 1.17845 1.02966 0.92147 0.91992 0.92693 0.89994 0.91910 0.91804 0.92344 0.82148 0.75616 0.90874 0.92232 0.92789 0.92578 0.92507 0.92006 0.78230 0.93437 0.91069 0.90291 0.90004 0.89073 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 2 C -0.01 -0.08 3.38 -91.78 -0.31 -0.39 16 3 C -0.15 -1.26 8.79 37.16 0.33 -0.93 16 4 C 0.03 0.39 6.13 -82.47 -0.51 -0.11 16 5 C -0.18 -2.15 9.65 -38.98 -0.38 -2.53 16 6 C -0.04 -0.47 6.96 -82.06 -0.57 -1.04 16 7 C 0.59 8.12 7.76 -12.63 -0.10 8.02 16 8 O -0.55 -8.45 14.29 5.26 0.08 -8.37 16 9 N -0.70 -8.96 4.22 -54.97 -0.23 -9.19 16 10 C 0.15 2.01 2.83 -67.94 -0.19 1.81 16 11 H 0.09 1.18 7.50 -51.92 -0.39 0.79 16 12 C -0.13 -1.61 5.60 -26.74 -0.15 -1.76 16 13 C -0.12 -1.56 5.77 -26.73 -0.15 -1.72 16 14 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 15 C 0.18 3.22 2.60 -67.93 -0.18 3.04 16 16 H 0.04 0.72 6.44 -51.93 -0.33 0.39 16 17 N -0.72 -16.97 5.12 -53.43 -0.27 -17.25 16 18 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 19 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 22 Si 0.91 21.71 29.55 -169.99 -5.02 16.69 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.13 -2.01 5.08 -26.73 -0.14 -2.14 16 27 N -0.26 -3.27 3.75 -63.88 -0.24 -3.51 16 28 C 0.08 0.81 10.89 59.85 0.65 1.46 16 29 N -0.28 -3.64 11.90 33.64 0.40 -3.24 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.56 7.37 -51.93 -0.38 0.18 16 36 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.16 1.67 7.05 -52.49 -0.37 1.30 16 38 H 0.41 5.01 5.90 -40.82 -0.24 4.77 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.75 7.60 -51.93 -0.39 0.35 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.38 9.69 7.80 -40.82 -0.32 9.37 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 49 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.11 1.15 6.19 -51.93 -0.32 0.83 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -31.17 402.87 -8.88 -40.05 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -8.64 Total: 11.87 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.74 Total: -6.48 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.38 Total: -59.83 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.37 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.17 -8.88 -40.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981434504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.802 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds