Wall clock time and date at job start Tue Mar 31 2020 19:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47060 * 2 1 4 4 C 1.50696 * 109.47488 * 119.99804 * 2 1 3 5 5 C 1.39677 * 126.07160 * 275.26913 * 4 2 1 6 6 C 1.38401 * 105.36104 * 180.10547 * 5 4 2 7 7 C 1.47167 * 126.88653 * 179.91726 * 6 5 4 8 8 O 1.21618 * 120.00181 * 184.81615 * 7 6 5 9 9 N 1.34780 * 119.99765 * 4.81415 * 7 6 5 10 10 C 1.46494 * 120.00227 * 174.39431 * 9 7 6 11 11 H 1.09007 * 109.46635 * 35.00285 * 10 9 7 12 12 C 1.52995 * 109.47369 * 275.00348 * 10 9 7 13 13 C 1.52995 * 109.47044 * 299.99866 * 12 10 9 14 14 C 1.53005 * 109.46841 * 299.99805 * 13 12 10 15 15 C 1.52995 * 109.47142 * 60.00255 * 14 13 12 16 16 H 1.09004 * 109.47133 * 59.99719 * 15 14 13 17 17 N 1.46496 * 109.47296 * 179.97438 * 15 14 13 18 18 C 1.36940 * 120.00177 * 275.00485 * 17 15 14 19 19 H 1.07999 * 119.99520 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99847 * 179.72332 * 18 17 15 21 21 N 1.31627 * 120.00312 * 0.27145 * 20 18 17 22 22 Si 1.86806 * 119.99978 * 180.26898 * 20 18 17 23 23 H 1.48503 * 109.46809 * 60.00310 * 22 20 18 24 24 H 1.48496 * 109.47016 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47304 * 300.00230 * 22 20 18 26 26 C 1.52996 * 109.47337 * 154.99574 * 10 9 7 27 27 N 1.36596 * 106.23201 * 359.65339 * 6 5 4 28 28 C 1.46501 * 125.19323 * 180.25216 * 27 6 5 29 29 N 1.28439 * 109.62210 * 0.22470 * 27 6 5 30 30 H 1.09000 * 109.47014 * 299.99726 * 1 2 3 31 31 H 1.08995 * 109.47099 * 60.00084 * 1 2 3 32 32 H 1.09006 * 109.47188 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47485 * 240.00183 * 2 1 3 34 34 H 1.09001 * 109.47465 * 300.00113 * 3 2 1 35 35 H 1.09004 * 109.47392 * 59.99988 * 3 2 1 36 36 H 1.09007 * 109.47314 * 180.02562 * 3 2 1 37 37 H 1.08002 * 127.31993 * 0.02562 * 5 4 2 38 38 H 0.97005 * 119.99998 * 354.39461 * 9 7 6 39 39 H 1.09005 * 109.47254 * 179.97438 * 12 10 9 40 40 H 1.08997 * 109.47130 * 60.00026 * 12 10 9 41 41 H 1.09007 * 109.46709 * 180.02562 * 13 12 10 42 42 H 1.08990 * 109.47368 * 59.99975 * 13 12 10 43 43 H 1.08996 * 109.47196 * 299.99788 * 14 13 12 44 44 H 1.09000 * 109.46644 * 180.02562 * 14 13 12 45 45 H 0.97002 * 119.99899 * 94.99890 * 17 15 14 46 46 H 0.97002 * 119.99959 * 180.02562 * 21 20 18 47 47 H 1.08998 * 109.47573 * 300.01101 * 26 10 9 48 48 H 1.08996 * 109.47125 * 180.02562 * 26 10 9 49 49 H 1.08998 * 109.47526 * 90.46328 * 28 27 6 50 50 H 1.09000 * 109.47214 * 210.46623 * 28 27 6 51 51 H 1.09001 * 109.46872 * 330.46666 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.2088 -0.1417 2.4939 6 6 2.6851 -1.1659 3.2937 7 6 3.0336 -1.0829 4.7211 8 8 3.5256 -2.0423 5.2837 9 7 2.8075 0.0564 5.4048 10 6 3.0389 0.1013 6.8506 11 1 3.8935 -0.5272 7.1014 12 6 1.7968 -0.4114 7.5821 13 6 0.5973 0.4707 7.2301 14 6 0.8818 1.9123 7.6567 15 6 2.1240 2.4249 6.9252 16 1 1.9517 2.3916 5.8494 17 7 2.3960 3.8054 7.3332 18 6 1.7594 4.8429 6.7058 19 1 1.0571 4.6434 5.9100 20 6 2.0129 6.1505 7.0963 21 7 2.8692 6.3936 8.0659 22 14 1.1389 7.5655 6.2456 23 1 -0.3284 7.4172 6.4196 24 1 1.5803 8.8511 6.8434 25 1 1.4695 7.5528 4.7979 26 6 3.3235 1.5427 7.2772 27 7 2.7612 -2.2708 2.4941 28 6 3.2130 -3.5958 2.9258 29 7 2.3758 -1.9709 1.3062 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 2.0159 0.8805 2.7847 38 1 2.4916 0.8468 4.9394 39 1 1.9692 -0.3784 8.6579 40 1 1.5942 -1.4383 7.2783 41 1 -0.2876 0.1057 7.7516 42 1 0.4251 0.4374 6.1544 43 1 1.0540 1.9456 8.7324 44 1 0.0271 2.5406 7.4062 45 1 3.0270 3.9845 8.0477 46 1 3.0461 7.3075 8.3390 47 1 4.2084 1.9080 6.7560 48 1 3.4961 1.5760 8.3529 49 1 2.3585 -4.1751 3.2754 50 1 3.6824 -4.1106 2.0874 51 1 3.9345 -3.4877 3.7357 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981434504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:48 Heat of formation + Delta-G solvation = 10.396790 kcal Electronic energy + Delta-G solvation = -29811.878263 eV Core-core repulsion = 25939.427124 eV Total energy + Delta-G solvation = -3872.451139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.62346 -41.13028 -39.17964 -36.88585 -36.14231 -34.64587 -33.27802 -32.93671 -32.21533 -30.55083 -29.45077 -28.00965 -27.67779 -25.69130 -24.85063 -23.71356 -23.17171 -22.46080 -21.69133 -20.38630 -20.11236 -19.14760 -18.76891 -17.38520 -17.32097 -16.82782 -16.58139 -16.24471 -15.89889 -15.69913 -15.21010 -15.13137 -14.99831 -14.96383 -14.75436 -14.57123 -14.19698 -13.89433 -13.53426 -13.49080 -13.38169 -13.10284 -13.02444 -12.88197 -12.86101 -12.74010 -12.30384 -12.23723 -12.14962 -12.06234 -12.01185 -11.92689 -11.58749 -11.47382 -11.44380 -11.16921 -10.99975 -10.80754 -10.32352 -9.98932 -9.86821 -8.95193 -7.89327 -5.16994 0.17396 1.35876 1.51070 1.51186 1.52889 1.58666 2.10847 2.18728 2.60070 3.36334 3.44272 3.47156 3.69345 3.88814 3.90890 3.93336 4.14020 4.26681 4.29742 4.31213 4.32082 4.32721 4.36937 4.45825 4.55983 4.57800 4.62565 4.66935 4.72759 4.73578 4.83065 4.88342 4.95401 5.05262 5.06916 5.10956 5.18024 5.20114 5.24857 5.37644 5.42014 5.43966 5.45843 5.52805 5.53847 5.57971 5.67689 5.72447 6.32670 6.36971 6.96977 7.06350 7.39459 8.16220 8.38129 9.34023 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009918 B = 0.003526 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.343763 B = 7940.039330 C =10009.667729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.008 4.008 3 C -0.144 4.144 4 C 0.026 3.974 5 C -0.180 4.180 6 C -0.052 4.052 7 C 0.595 3.405 8 O -0.567 6.567 9 N -0.695 5.695 10 C 0.161 3.839 11 H 0.090 0.910 12 C -0.121 4.121 13 C -0.106 4.106 14 C -0.127 4.127 15 C 0.177 3.823 16 H 0.046 0.954 17 N -0.737 5.737 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.075 4.075 21 N -0.971 5.971 22 Si 0.965 3.035 23 H -0.280 1.280 24 H -0.301 1.301 25 H -0.276 1.276 26 C -0.122 4.122 27 N -0.265 5.265 28 C 0.081 3.919 29 N -0.293 5.293 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.173 0.827 38 H 0.409 0.591 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.040 0.960 45 H 0.372 0.628 46 H 0.249 0.751 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.093 0.907 50 H 0.109 0.891 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.605 -18.488 -12.524 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.028 4.028 3 C -0.201 4.201 4 C -0.130 4.130 5 C -0.209 4.209 6 C -0.180 4.180 7 C 0.382 3.618 8 O -0.447 6.447 9 N -0.346 5.346 10 C 0.056 3.944 11 H 0.108 0.892 12 C -0.160 4.160 13 C -0.144 4.144 14 C -0.168 4.168 15 C 0.068 3.932 16 H 0.064 0.936 17 N -0.376 5.376 18 C -0.365 4.365 19 H 0.095 0.905 20 C -0.267 4.267 21 N -0.622 5.622 22 Si 0.795 3.205 23 H -0.206 1.206 24 H -0.227 1.227 25 H -0.202 1.202 26 C -0.161 4.161 27 N -0.052 5.052 28 C -0.058 4.058 29 N -0.127 5.127 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.190 0.810 38 H 0.247 0.753 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.204 0.796 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.111 0.889 50 H 0.128 0.872 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.222 -20.211 -12.787 24.019 hybrid contribution -0.261 2.133 0.517 2.210 sum -2.482 -18.078 -12.270 21.989 Atomic orbital electron populations 1.21795 0.93166 1.01742 1.02944 1.19516 0.96190 0.95272 0.91808 1.21841 1.01010 0.94057 1.03226 1.22383 1.03578 0.89841 0.97166 1.22351 1.05475 1.00169 0.92897 1.21445 1.12546 0.89978 0.94074 1.16947 0.77603 0.83322 0.83965 1.90729 1.45745 1.37600 1.70673 1.45847 1.66669 1.12913 1.09217 1.20933 0.98735 0.96400 0.78303 0.89167 1.21867 0.94286 0.98834 1.00963 1.21418 0.97852 0.94006 1.01138 1.22109 0.98951 0.95536 1.00175 1.20373 0.92924 0.83330 0.96536 0.93625 1.42625 1.51261 1.00944 1.42779 1.19570 1.17697 0.86592 1.12687 0.90454 1.25472 1.01249 0.99807 1.00183 1.69805 1.39972 1.19248 1.33142 0.85326 0.78215 0.78795 0.78153 1.20632 1.22717 1.20203 1.21981 0.98452 0.93115 1.02526 1.45787 1.44480 1.10190 1.04755 1.22515 1.02410 0.77972 1.02940 1.73096 1.17806 1.18499 1.03262 0.92582 0.90222 0.93393 0.89653 0.90317 0.92090 0.92974 0.80959 0.75298 0.89847 0.91771 0.91387 0.92204 0.93235 0.94068 0.79634 0.94252 0.91851 0.90033 0.88873 0.87215 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 2 C -0.01 -0.13 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -2.22 8.79 71.98 0.63 -1.58 16 4 C 0.03 0.60 6.13 43.05 0.26 0.86 16 5 C -0.18 -4.10 9.65 22.66 0.22 -3.88 16 6 C -0.05 -1.30 6.96 40.79 0.28 -1.02 16 7 C 0.60 15.56 7.76 86.59 0.67 16.23 16 8 O -0.57 -16.77 14.29 -4.09 -0.06 -16.83 16 9 N -0.69 -16.75 4.22 -446.08 -1.88 -18.64 16 10 C 0.16 3.95 2.83 44.99 0.13 4.08 16 11 H 0.09 2.27 7.50 -2.38 -0.02 2.25 16 12 C -0.12 -2.77 5.60 30.59 0.17 -2.60 16 13 C -0.11 -2.61 5.77 30.59 0.18 -2.43 16 14 C -0.13 -4.07 5.50 30.59 0.17 -3.90 16 15 C 0.18 6.14 2.60 44.99 0.12 6.25 16 16 H 0.05 1.55 6.44 -2.38 -0.02 1.54 16 17 N -0.74 -34.57 5.12 -322.95 -1.65 -36.23 16 18 C -0.23 -12.24 9.93 84.03 0.83 -11.41 16 19 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 20 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 21 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 22 Si 0.97 44.70 29.55 68.60 2.03 46.73 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 26 C -0.12 -3.53 5.08 30.59 0.16 -3.37 16 27 N -0.26 -6.40 3.75 -356.02 -1.33 -7.73 16 28 C 0.08 1.44 10.89 127.77 1.39 2.84 16 29 N -0.29 -7.32 11.90 -47.49 -0.57 -7.89 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 0.97 7.37 -2.39 -0.02 0.95 16 36 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 37 H 0.17 3.34 7.05 -2.91 -0.02 3.32 16 38 H 0.41 9.47 5.90 -92.70 -0.55 8.93 16 39 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.37 19.05 7.80 -92.71 -0.72 18.33 16 46 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 47 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.10 2.06 6.19 -2.39 -0.01 2.05 16 Total: -1.00 -66.06 402.87 2.78 -63.29 By element: Atomic # 1 Polarization: 40.57 SS G_CDS: -0.34 Total: 40.23 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 6.30 Total: -5.26 kcal Atomic # 7 Polarization: -123.01 SS G_CDS: -5.15 Total: -128.16 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.06 Total: -16.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.06 2.78 -63.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981434504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.683 kcal (2) G-P(sol) polarization free energy of solvation -66.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds