Wall clock time and date at job start Tue Mar 31 2020 20:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46831 * 2 1 4 4 C 1.53000 * 109.47222 * 239.99846 * 2 1 3 5 5 C 1.50695 * 109.47193 * 119.99396 * 2 1 3 6 6 N 1.30449 * 125.99444 * 242.24429 * 5 2 1 7 7 N 1.39930 * 108.90005 * 180.26384 * 6 5 2 8 8 H 0.97000 * 125.75455 * 179.73867 * 7 6 5 9 9 C 1.34261 * 108.48990 * 359.74119 * 7 6 5 10 10 C 1.38037 * 107.41840 * 359.97438 * 9 7 6 11 11 C 1.47433 * 126.41382 * 179.97438 * 10 9 7 12 12 O 1.21610 * 119.99867 * 174.70503 * 11 10 9 13 13 N 1.34773 * 119.99901 * 354.69864 * 11 10 9 14 14 C 1.46505 * 119.99609 * 180.02562 * 13 11 10 15 15 H 1.08994 * 109.47218 * 324.99782 * 14 13 11 16 16 C 1.52994 * 109.47468 * 85.00420 * 14 13 11 17 17 C 1.52994 * 109.47419 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46679 * 299.99564 * 17 16 14 19 19 C 1.52996 * 109.47149 * 60.00530 * 18 17 16 20 20 H 1.09002 * 109.47412 * 59.99421 * 19 18 17 21 21 N 1.46503 * 109.47097 * 179.97438 * 19 18 17 22 22 C 1.36940 * 119.99781 * 274.99567 * 21 19 18 23 23 H 1.08003 * 120.00098 * 359.97438 * 22 21 19 24 24 C 1.38810 * 119.99913 * 180.02562 * 22 21 19 25 25 N 1.31613 * 120.00032 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 119.99923 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.46886 * 90.00503 * 26 24 22 28 28 H 1.48504 * 109.46828 * 210.00219 * 26 24 22 29 29 H 1.48499 * 109.47321 * 330.00283 * 26 24 22 30 30 C 1.53004 * 109.47009 * 299.99405 * 19 18 17 31 31 H 1.09000 * 109.47324 * 308.67144 * 1 2 3 32 32 H 1.09005 * 109.47277 * 68.67020 * 1 2 3 33 33 H 1.09003 * 109.47112 * 188.67040 * 1 2 3 34 34 H 1.09003 * 109.46751 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46792 * 299.99439 * 3 2 1 36 36 H 1.08992 * 109.47531 * 60.00120 * 3 2 1 37 37 H 1.08998 * 109.46746 * 291.54798 * 4 2 1 38 38 H 1.09004 * 109.47135 * 51.54608 * 4 2 1 39 39 H 1.08999 * 109.47012 * 171.54907 * 4 2 1 40 40 H 1.08004 * 126.29052 * 179.97438 * 9 7 6 41 41 H 0.96996 * 120.00125 * 0.02562 * 13 11 10 42 42 H 1.09002 * 109.46864 * 59.99274 * 16 14 13 43 43 H 1.09003 * 109.46832 * 300.00044 * 16 14 13 44 44 H 1.08994 * 109.47223 * 59.99389 * 17 16 14 45 45 H 1.09000 * 109.46972 * 179.97438 * 17 16 14 46 46 H 1.09010 * 109.46875 * 180.02562 * 18 17 16 47 47 H 1.08994 * 109.47151 * 299.99869 * 18 17 16 48 48 H 0.97000 * 120.00349 * 94.99547 * 21 19 18 49 49 H 0.97005 * 120.00371 * 179.97438 * 25 24 22 50 50 H 1.08992 * 109.47402 * 180.02562 * 30 19 18 51 51 H 1.09002 * 109.47046 * 300.00240 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.7513 -0.1808 2.1815 7 7 3.0216 -1.1599 3.1440 8 1 3.5406 -1.0311 3.9533 9 6 2.4415 -2.3076 2.7583 10 6 1.8039 -2.0655 1.5582 11 6 1.0348 -3.0405 0.7635 12 8 0.4384 -2.6778 -0.2323 13 7 0.9928 -4.3337 1.1406 14 6 0.2290 -5.3026 0.3506 15 1 -0.6616 -4.8209 -0.0528 16 6 1.0953 -5.8186 -0.8001 17 6 0.2978 -6.8309 -1.6247 18 6 -0.1155 -8.0029 -0.7323 19 6 -0.9819 -7.4870 0.4183 20 1 -1.8728 -7.0057 0.0149 21 7 -1.3782 -8.6094 1.2725 22 6 -2.4796 -9.3576 0.9526 23 1 -3.0564 -9.1201 0.0709 24 6 -2.8554 -10.4207 1.7622 25 7 -3.9137 -11.1402 1.4545 26 14 -1.8583 -10.8311 3.2876 27 1 -2.3981 -10.0792 4.4489 28 1 -1.9448 -12.2887 3.5582 29 1 -0.4395 -10.4516 3.0685 30 6 -0.1845 -6.4747 1.2430 31 1 -0.3634 0.6421 0.8023 32 1 -0.3634 0.3738 -0.9573 33 1 -0.3633 -1.0159 0.1549 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 1.8052 -1.7832 -1.1768 38 1 1.5586 -0.3021 -2.1328 39 1 3.1195 -0.5923 -1.3279 40 1 2.4688 -3.2476 3.2895 41 1 1.4683 -4.6230 1.9350 42 1 1.9860 -6.3003 -0.3965 43 1 1.3902 -4.9835 -1.4355 44 1 -0.5930 -6.3496 -2.0281 45 1 0.9149 -7.1981 -2.4447 46 1 -0.6833 -8.7244 -1.3200 47 1 0.7753 -8.4842 -0.3289 48 1 -0.8605 -8.8225 2.0646 49 1 -4.1761 -11.8833 2.0200 50 1 -0.8015 -6.1074 2.0630 51 1 0.7064 -6.9560 1.6465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981451291.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:20 Heat of formation + Delta-G solvation = 30.650501 kcal Electronic energy + Delta-G solvation = -29666.205621 eV Core-core repulsion = 25794.632749 eV Total energy + Delta-G solvation = -3871.572872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.86603 -39.68301 -38.00879 -36.82735 -34.72507 -33.40315 -31.39085 -31.28818 -30.97216 -29.18447 -28.11572 -27.19873 -27.17934 -23.83437 -23.29470 -22.95524 -22.01775 -21.03829 -20.21720 -19.61563 -18.76079 -18.41316 -17.52975 -16.54926 -16.05428 -15.50800 -15.19756 -14.89641 -14.70918 -14.54001 -14.31508 -14.08859 -13.96652 -13.66733 -13.57160 -13.23061 -13.02987 -12.70306 -12.36093 -12.25671 -12.23448 -12.04945 -11.57763 -11.48148 -11.28075 -11.26710 -11.09072 -11.00532 -10.94511 -10.86671 -10.66565 -10.41123 -10.27970 -10.10159 -9.99005 -9.81822 -9.60771 -9.54650 -9.15002 -8.93062 -8.85337 -7.28258 -5.77649 -3.13325 1.19367 1.93322 2.35171 3.17980 3.32417 3.34783 3.36819 3.43192 4.09534 4.28404 4.57311 4.67545 4.80086 4.91986 4.95563 5.01245 5.08093 5.22216 5.24019 5.28804 5.45139 5.51493 5.57839 5.61248 5.63841 5.66105 5.78789 5.82443 5.83401 5.85246 5.89730 5.94493 6.00235 6.02052 6.06821 6.21215 6.23585 6.25847 6.37505 6.45032 6.47172 6.47755 6.64511 6.68084 6.74633 6.89066 7.03045 7.22291 7.53565 7.99213 8.28118 8.41416 9.19807 9.92166 10.11732 11.40753 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.002546 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.239531 B =10993.158645 C =11693.997502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.018 3.982 3 C -0.137 4.137 4 C -0.148 4.148 5 C 0.149 3.851 6 N -0.297 5.297 7 N -0.464 5.464 8 H 0.443 0.557 9 C 0.102 3.898 10 C -0.283 4.283 11 C 0.588 3.412 12 O -0.524 6.524 13 N -0.722 5.722 14 C 0.152 3.848 15 H 0.092 0.908 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.137 4.137 19 C 0.188 3.812 20 H 0.058 0.942 21 N -0.749 5.749 22 C -0.241 4.241 23 H 0.091 0.909 24 C 0.003 3.997 25 N -0.934 5.934 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.278 1.278 30 C -0.133 4.133 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.185 0.815 41 H 0.393 0.607 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.069 0.931 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.996 21.930 0.957 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.019 4.019 6 N -0.118 5.118 7 N -0.168 5.168 8 H 0.287 0.713 9 C -0.051 4.051 10 C -0.298 4.298 11 C 0.376 3.624 12 O -0.403 6.403 13 N -0.372 5.372 14 C 0.047 3.953 15 H 0.110 0.890 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.177 4.177 19 C 0.078 3.922 20 H 0.076 0.924 21 N -0.391 5.391 22 C -0.371 4.371 23 H 0.109 0.891 24 C -0.192 4.192 25 N -0.582 5.582 26 Si 0.715 3.285 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.204 1.204 30 C -0.172 4.172 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.202 0.798 41 H 0.227 0.773 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.192 0.808 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.903 23.141 0.577 28.663 hybrid contribution 0.966 -1.393 1.975 2.603 sum 17.869 21.748 2.553 28.263 Atomic orbital electron populations 1.22106 0.92442 1.04880 1.01164 1.18996 0.96425 0.93827 0.89168 1.21840 1.01060 0.94801 1.01768 1.22092 0.99423 1.03788 0.95220 1.22480 0.93255 0.91301 0.94883 1.77186 1.21832 1.12477 1.00299 1.46136 1.42350 1.07245 1.21045 0.71252 1.23169 0.93946 0.92245 0.95716 1.20339 1.13653 0.96216 0.99635 1.17218 0.79878 0.81239 0.84016 1.90650 1.44996 1.78263 1.26383 1.46003 1.53141 1.07909 1.30144 1.20989 0.94681 0.88339 0.91249 0.89021 1.21886 0.98527 0.98803 0.97011 1.21478 0.99673 0.96364 0.97826 1.22252 1.00186 0.97198 0.98084 1.20072 0.94842 0.87357 0.89897 0.92409 1.42772 1.32763 1.34802 1.28715 1.19081 1.01616 1.07607 1.08790 0.89129 1.24677 0.97676 0.98128 0.98764 1.69698 1.26779 1.21849 1.39864 0.86551 0.79985 0.77538 0.84424 1.21187 1.21837 1.20394 1.22131 1.00671 0.95597 0.98828 0.93818 0.92228 0.88807 0.92627 0.92278 0.92501 0.89136 0.92172 0.93832 0.79822 0.77322 0.92284 0.91903 0.91918 0.92424 0.91460 0.92872 0.80790 0.93086 0.91253 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.20 37.16 0.30 -1.35 16 2 C 0.02 0.19 0.75 -155.66 -0.12 0.08 16 3 C -0.14 -1.28 7.94 37.16 0.30 -0.99 16 4 C -0.15 -1.59 8.19 37.16 0.30 -1.29 16 5 C 0.15 1.66 5.64 -82.02 -0.46 1.20 16 6 N -0.30 -3.11 11.93 33.89 0.40 -2.70 16 7 N -0.46 -3.21 7.29 30.85 0.22 -2.98 16 8 H 0.44 1.48 8.96 -182.73 -1.64 -0.15 16 9 C 0.10 0.69 11.52 -16.56 -0.19 0.50 16 10 C -0.28 -2.89 5.89 -105.07 -0.62 -3.51 16 11 C 0.59 6.81 7.16 -12.52 -0.09 6.72 16 12 O -0.52 -7.31 10.08 5.27 0.05 -7.25 16 13 N -0.72 -7.29 5.07 -54.88 -0.28 -7.57 16 14 C 0.15 1.86 2.46 -67.93 -0.17 1.70 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 16 C -0.12 -1.50 5.49 -26.74 -0.15 -1.64 16 17 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 18 C -0.14 -2.25 5.50 -26.73 -0.15 -2.40 16 19 C 0.19 3.37 2.77 -67.93 -0.19 3.18 16 20 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 21 N -0.75 -16.88 4.93 -53.42 -0.26 -17.14 16 22 C -0.24 -6.61 10.41 -15.06 -0.16 -6.77 16 23 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.01 13.97 55.49 0.78 -28.24 16 26 Si 0.88 21.59 27.74 -169.99 -4.71 16.88 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 30 C -0.13 -1.84 4.86 -26.72 -0.13 -1.97 16 31 H 0.04 0.46 8.13 -51.93 -0.42 0.04 16 32 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.09 1.23 4.76 -51.93 -0.25 0.98 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.09 1.14 4.59 -51.93 -0.24 0.90 16 38 H 0.06 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.04 0.44 8.13 -51.93 -0.42 0.02 16 40 H 0.18 0.50 7.49 -52.48 -0.39 0.11 16 41 H 0.39 2.90 7.55 -40.82 -0.31 2.60 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 48 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 392.92 15.07 5.92 5.92 Total: -1.00 -33.66 392.92 -9.43 -43.10 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -9.79 Total: 8.22 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.76 Total: -8.23 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.86 Total: -58.63 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: 0.05 Total: -7.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.88 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.66 -9.43 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981451291.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.746 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds