Wall clock time and date at job start Tue Mar 31 2020 20:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 C 1.52997 * 109.47183 * 239.99649 * 2 1 3 5 5 C 1.50709 * 109.47037 * 119.99977 * 2 1 3 6 6 N 1.30448 * 125.98508 * 242.09400 * 5 2 1 7 7 N 1.39941 * 108.89115 * 180.16571 * 6 5 2 8 8 H 0.96998 * 125.75151 * 179.84665 * 7 6 5 9 9 C 1.34262 * 108.49248 * 359.58468 * 7 6 5 10 10 C 1.38045 * 107.41853 * 0.24154 * 9 7 6 11 11 C 1.47421 * 126.41434 * 180.02562 * 10 9 7 12 12 O 1.21610 * 120.00054 * 175.05214 * 11 10 9 13 13 N 1.34774 * 120.00325 * 355.04947 * 11 10 9 14 14 C 1.46506 * 120.00383 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46583 * 324.99993 * 14 13 11 16 16 C 1.52992 * 109.47071 * 85.00012 * 14 13 11 17 17 C 1.52993 * 109.47250 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47087 * 300.00189 * 17 16 14 19 19 C 1.52999 * 109.47306 * 60.00065 * 18 17 16 20 20 H 1.08998 * 109.47240 * 180.02562 * 19 18 17 21 21 N 1.46492 * 109.47356 * 59.99897 * 19 18 17 22 22 C 1.36936 * 119.99958 * 85.00207 * 21 19 18 23 23 H 1.07998 * 120.00218 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00128 * 180.02562 * 22 21 19 25 25 N 1.31627 * 119.99738 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00230 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46889 * 89.99812 * 26 24 22 28 28 H 1.48498 * 109.47374 * 210.00278 * 26 24 22 29 29 H 1.48505 * 109.47097 * 330.00081 * 26 24 22 30 30 C 1.53000 * 109.46971 * 205.00315 * 14 13 11 31 31 H 1.08994 * 109.46994 * 308.69224 * 1 2 3 32 32 H 1.09005 * 109.46578 * 68.69141 * 1 2 3 33 33 H 1.08999 * 109.47284 * 188.68607 * 1 2 3 34 34 H 1.08995 * 109.47589 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47152 * 299.99997 * 3 2 1 36 36 H 1.08997 * 109.47321 * 59.99725 * 3 2 1 37 37 H 1.09001 * 109.47566 * 291.53238 * 4 2 1 38 38 H 1.09003 * 109.47493 * 51.53853 * 4 2 1 39 39 H 1.08999 * 109.47115 * 171.53593 * 4 2 1 40 40 H 1.07997 * 126.29001 * 180.22227 * 9 7 6 41 41 H 0.97002 * 119.99990 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.47483 * 300.00561 * 16 14 13 43 43 H 1.08997 * 109.47012 * 59.99866 * 16 14 13 44 44 H 1.09003 * 109.47415 * 180.02562 * 17 16 14 45 45 H 1.08997 * 109.47374 * 59.99902 * 17 16 14 46 46 H 1.09004 * 109.47150 * 299.99886 * 18 17 16 47 47 H 1.09004 * 109.47120 * 180.02562 * 18 17 16 48 48 H 0.97007 * 120.00338 * 265.00232 * 21 19 18 49 49 H 0.96998 * 119.99260 * 180.02562 * 25 24 22 50 50 H 1.08994 * 109.46833 * 299.99489 * 30 14 13 51 51 H 1.08996 * 109.47034 * 60.00411 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7536 -0.1816 2.1802 7 7 3.0211 -1.1600 3.1443 8 1 3.5397 -1.0312 3.9538 9 6 2.4341 -2.3056 2.7627 10 6 1.7998 -2.0645 1.5605 11 6 1.0247 -3.0374 0.7694 12 8 0.4375 -2.6763 -0.2325 13 7 0.9668 -4.3271 1.1563 14 6 0.1970 -5.2941 0.3698 15 1 -0.6863 -4.8061 -0.0422 16 6 1.0639 -5.8284 -0.7719 17 6 0.2598 -6.8377 -1.5936 18 6 -0.1719 -7.9983 -0.6950 19 6 -1.0390 -7.4641 0.4467 20 1 -1.3462 -8.2909 1.0872 21 7 -2.2258 -6.8078 -0.1072 22 6 -3.3323 -7.5490 -0.4253 23 1 -3.3303 -8.6174 -0.2675 24 6 -4.4568 -6.9272 -0.9507 25 7 -4.4591 -5.6252 -1.1435 26 14 -5.9660 -7.9385 -1.3854 27 1 -6.8656 -8.0168 -0.2066 28 1 -6.6845 -7.2952 -2.5146 29 1 -5.5476 -9.3075 -1.7806 30 6 -0.2343 -6.4546 1.2689 31 1 -0.3633 0.6424 0.8021 32 1 -0.3633 0.3735 -0.9575 33 1 -0.3634 -1.0159 0.1552 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.8055 -1.7833 -1.1768 38 1 1.5585 -0.3023 -2.1328 39 1 3.1194 -0.5922 -1.3280 40 1 2.4545 -3.2435 3.2978 41 1 1.4349 -4.6151 1.9556 42 1 1.3712 -5.0016 -1.4124 43 1 1.9472 -6.3162 -0.3598 44 1 0.8776 -7.2187 -2.4069 45 1 -0.6233 -6.3495 -2.0058 46 1 0.7111 -8.4867 -0.2829 47 1 -0.7445 -8.7177 -1.2806 48 1 -2.2278 -5.8481 -0.2486 49 1 -5.2449 -5.1907 -1.5103 50 1 0.6490 -6.9425 1.6809 51 1 -0.8520 -6.0740 2.0822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981451293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:34 Heat of formation + Delta-G solvation = 31.696763 kcal Electronic energy + Delta-G solvation = -30282.718534 eV Core-core repulsion = 26411.191031 eV Total energy + Delta-G solvation = -3871.527503 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.69651 -39.48979 -37.88152 -36.64434 -34.33172 -33.00914 -31.15879 -30.96928 -30.73854 -28.85369 -27.90389 -27.02489 -26.96737 -23.74234 -23.34484 -22.78846 -21.85144 -21.42388 -20.04807 -19.01483 -18.25653 -18.12648 -17.19170 -16.38936 -15.69620 -15.31478 -15.02016 -14.69604 -14.57579 -14.45637 -14.14086 -13.91128 -13.75412 -13.52854 -13.41004 -13.10246 -12.81423 -12.38564 -12.06907 -12.01838 -11.85824 -11.73393 -11.40097 -11.38088 -11.22219 -11.08925 -10.89618 -10.85797 -10.75619 -10.68210 -10.48223 -10.14782 -10.10958 -9.99159 -9.74378 -9.65557 -9.47792 -9.29514 -8.95771 -8.83543 -8.58630 -6.89167 -5.69524 -2.98573 1.35631 2.11068 2.49657 3.42639 3.47341 3.52264 3.54272 3.55758 4.26116 4.43498 4.64185 4.84136 5.05310 5.13739 5.16544 5.25266 5.29415 5.40857 5.43837 5.56182 5.65199 5.74621 5.76005 5.78798 5.84007 5.90100 5.94669 6.01234 6.05118 6.09030 6.12842 6.16147 6.19481 6.20964 6.24710 6.42621 6.44184 6.48514 6.62434 6.68247 6.71719 6.81625 6.88950 6.90102 6.93411 7.07789 7.16114 7.38264 7.75710 7.78305 8.48401 8.55114 9.59565 10.17450 10.51682 11.52514 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.003075 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.733905 B = 9102.996916 C = 9926.619000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.018 3.982 3 C -0.136 4.136 4 C -0.148 4.148 5 C 0.150 3.850 6 N -0.298 5.298 7 N -0.466 5.466 8 H 0.442 0.558 9 C 0.099 3.901 10 C -0.279 4.279 11 C 0.584 3.416 12 O -0.516 6.516 13 N -0.723 5.723 14 C 0.148 3.852 15 H 0.101 0.899 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.135 4.135 19 C 0.180 3.820 20 H 0.049 0.951 21 N -0.721 5.721 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 C -0.128 4.128 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.060 0.940 39 H 0.041 0.959 40 H 0.184 0.816 41 H 0.389 0.611 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.041 0.959 47 H 0.060 0.940 48 H 0.385 0.615 49 H 0.255 0.745 50 H 0.059 0.941 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.811 7.304 8.514 21.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.016 3.984 3 C -0.194 4.194 4 C -0.205 4.205 5 C -0.019 4.019 6 N -0.120 5.120 7 N -0.170 5.170 8 H 0.286 0.714 9 C -0.054 4.054 10 C -0.294 4.294 11 C 0.371 3.629 12 O -0.394 6.394 13 N -0.373 5.373 14 C 0.044 3.956 15 H 0.119 0.881 16 C -0.158 4.158 17 C -0.148 4.148 18 C -0.176 4.176 19 C 0.069 3.931 20 H 0.067 0.933 21 N -0.364 5.364 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.577 5.577 26 Si 0.734 3.266 27 H -0.219 1.219 28 H -0.219 1.219 29 H -0.209 1.209 30 C -0.167 4.167 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.201 0.799 41 H 0.222 0.778 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.079 0.921 48 H 0.220 0.780 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.813 8.506 8.180 22.208 hybrid contribution -0.619 -1.107 0.480 1.356 sum 18.193 7.399 8.661 21.465 Atomic orbital electron populations 1.22118 0.92245 1.05138 1.01207 1.19002 0.96540 0.93713 0.89148 1.21834 1.00917 0.94908 1.01734 1.22095 0.99212 1.03950 0.95286 1.22499 0.93138 0.91349 0.94869 1.77173 1.22024 1.12429 1.00326 1.46110 1.42410 1.07436 1.21041 0.71412 1.23125 0.94245 0.92224 0.95803 1.20400 1.13196 0.96330 0.99452 1.17231 0.80034 0.81306 0.84286 1.90694 1.44895 1.77969 1.25823 1.46016 1.53301 1.08366 1.29588 1.21041 0.94715 0.88563 0.91245 0.88130 1.21836 0.97940 0.98811 0.97201 1.21355 0.99984 0.96216 0.97218 1.22177 0.98539 0.97687 0.99148 1.20151 0.87355 0.93339 0.92264 0.93269 1.42502 1.10647 1.07553 1.75670 1.19208 0.91551 0.91476 1.34826 0.91311 1.24725 0.98239 0.95669 1.02185 1.69669 1.29525 1.07692 1.50791 0.86254 0.83534 0.79104 0.77658 1.21889 1.21859 1.20877 1.22082 0.99670 0.96340 0.98567 0.93872 0.92144 0.88603 0.92717 0.92294 0.92557 0.89053 0.92124 0.93956 0.79929 0.77765 0.92193 0.92994 0.93405 0.90290 0.94001 0.92090 0.77963 0.93530 0.92228 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.20 37.16 0.30 -1.81 16 2 C 0.02 0.24 0.75 -155.66 -0.12 0.12 16 3 C -0.14 -1.53 7.94 37.16 0.30 -1.24 16 4 C -0.15 -1.95 8.19 37.16 0.30 -1.65 16 5 C 0.15 1.96 5.64 -82.02 -0.46 1.50 16 6 N -0.30 -3.57 11.93 33.90 0.40 -3.17 16 7 N -0.47 -3.79 7.29 30.85 0.22 -3.57 16 8 H 0.44 1.91 8.96 -182.72 -1.64 0.27 16 9 C 0.10 0.80 11.52 -16.56 -0.19 0.61 16 10 C -0.28 -3.40 5.89 -105.07 -0.62 -4.02 16 11 C 0.58 8.38 7.17 -12.52 -0.09 8.29 16 12 O -0.52 -9.11 10.06 5.27 0.05 -9.05 16 13 N -0.72 -9.03 5.07 -54.88 -0.28 -9.31 16 14 C 0.15 2.29 2.28 -67.93 -0.15 2.14 16 15 H 0.10 2.02 5.94 -51.93 -0.31 1.71 16 16 C -0.12 -1.80 5.49 -26.74 -0.15 -1.94 16 17 C -0.11 -1.86 5.77 -26.74 -0.15 -2.02 16 18 C -0.14 -2.31 5.61 -26.73 -0.15 -2.46 16 19 C 0.18 3.36 3.10 -67.91 -0.21 3.15 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -17.36 4.28 -53.40 -0.23 -17.59 16 22 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 26 Si 0.90 22.38 29.55 -169.99 -5.02 17.36 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 30 C -0.13 -1.92 5.08 -26.70 -0.14 -2.05 16 31 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.10 1.60 4.75 -51.93 -0.25 1.36 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 1.40 4.61 -51.93 -0.24 1.16 16 38 H 0.06 0.76 8.07 -51.93 -0.42 0.34 16 39 H 0.04 0.51 8.13 -51.93 -0.42 0.09 16 40 H 0.18 0.70 7.48 -52.49 -0.39 0.30 16 41 H 0.39 3.47 7.55 -40.82 -0.31 3.16 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 1.64 7.60 -51.93 -0.39 1.24 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.39 10.02 6.06 -40.82 -0.25 9.78 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 51 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -33.22 391.60 -9.64 -42.87 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -9.65 Total: 12.38 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.77 Total: -8.46 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: 0.85 Total: -60.99 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.05 Total: -9.05 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.22 -9.64 -42.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981451293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.566 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds