Wall clock time and date at job start Tue Mar 31 2020 20:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47512 * 2 1 4 4 C 1.52997 * 109.47183 * 239.99649 * 2 1 3 5 5 C 1.50709 * 109.47037 * 119.99977 * 2 1 3 6 6 N 1.30448 * 125.98508 * 242.09400 * 5 2 1 7 7 N 1.39941 * 108.89115 * 180.16571 * 6 5 2 8 8 H 0.96998 * 125.75151 * 179.84665 * 7 6 5 9 9 C 1.34262 * 108.49248 * 359.58468 * 7 6 5 10 10 C 1.38045 * 107.41853 * 0.24154 * 9 7 6 11 11 C 1.47421 * 126.41434 * 180.02562 * 10 9 7 12 12 O 1.21610 * 120.00054 * 175.05214 * 11 10 9 13 13 N 1.34774 * 120.00325 * 355.04947 * 11 10 9 14 14 C 1.46506 * 120.00383 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46583 * 324.99993 * 14 13 11 16 16 C 1.52992 * 109.47071 * 85.00012 * 14 13 11 17 17 C 1.52993 * 109.47250 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47087 * 300.00189 * 17 16 14 19 19 C 1.52999 * 109.47306 * 60.00065 * 18 17 16 20 20 H 1.08998 * 109.47240 * 180.02562 * 19 18 17 21 21 N 1.46492 * 109.47356 * 59.99897 * 19 18 17 22 22 C 1.36936 * 119.99958 * 85.00207 * 21 19 18 23 23 H 1.07998 * 120.00218 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00128 * 180.02562 * 22 21 19 25 25 N 1.31627 * 119.99738 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00230 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46889 * 89.99812 * 26 24 22 28 28 H 1.48498 * 109.47374 * 210.00278 * 26 24 22 29 29 H 1.48505 * 109.47097 * 330.00081 * 26 24 22 30 30 C 1.53000 * 109.46971 * 205.00315 * 14 13 11 31 31 H 1.08994 * 109.46994 * 308.69224 * 1 2 3 32 32 H 1.09005 * 109.46578 * 68.69141 * 1 2 3 33 33 H 1.08999 * 109.47284 * 188.68607 * 1 2 3 34 34 H 1.08995 * 109.47589 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47152 * 299.99997 * 3 2 1 36 36 H 1.08997 * 109.47321 * 59.99725 * 3 2 1 37 37 H 1.09001 * 109.47566 * 291.53238 * 4 2 1 38 38 H 1.09003 * 109.47493 * 51.53853 * 4 2 1 39 39 H 1.08999 * 109.47115 * 171.53593 * 4 2 1 40 40 H 1.07997 * 126.29001 * 180.22227 * 9 7 6 41 41 H 0.97002 * 119.99990 * 0.02562 * 13 11 10 42 42 H 1.09003 * 109.47483 * 300.00561 * 16 14 13 43 43 H 1.08997 * 109.47012 * 59.99866 * 16 14 13 44 44 H 1.09003 * 109.47415 * 180.02562 * 17 16 14 45 45 H 1.08997 * 109.47374 * 59.99902 * 17 16 14 46 46 H 1.09004 * 109.47150 * 299.99886 * 18 17 16 47 47 H 1.09004 * 109.47120 * 180.02562 * 18 17 16 48 48 H 0.97007 * 120.00338 * 265.00232 * 21 19 18 49 49 H 0.96998 * 119.99260 * 180.02562 * 25 24 22 50 50 H 1.08994 * 109.46833 * 299.99489 * 30 14 13 51 51 H 1.08996 * 109.47034 * 60.00411 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7536 -0.1816 2.1802 7 7 3.0211 -1.1600 3.1443 8 1 3.5397 -1.0312 3.9538 9 6 2.4341 -2.3056 2.7627 10 6 1.7998 -2.0645 1.5605 11 6 1.0247 -3.0374 0.7694 12 8 0.4375 -2.6763 -0.2325 13 7 0.9668 -4.3271 1.1563 14 6 0.1970 -5.2941 0.3698 15 1 -0.6863 -4.8061 -0.0422 16 6 1.0639 -5.8284 -0.7719 17 6 0.2598 -6.8377 -1.5936 18 6 -0.1719 -7.9983 -0.6950 19 6 -1.0390 -7.4641 0.4467 20 1 -1.3462 -8.2909 1.0872 21 7 -2.2258 -6.8078 -0.1072 22 6 -3.3323 -7.5490 -0.4253 23 1 -3.3303 -8.6174 -0.2675 24 6 -4.4568 -6.9272 -0.9507 25 7 -4.4591 -5.6252 -1.1435 26 14 -5.9660 -7.9385 -1.3854 27 1 -6.8656 -8.0168 -0.2066 28 1 -6.6845 -7.2952 -2.5146 29 1 -5.5476 -9.3075 -1.7806 30 6 -0.2343 -6.4546 1.2689 31 1 -0.3633 0.6424 0.8021 32 1 -0.3633 0.3735 -0.9575 33 1 -0.3634 -1.0159 0.1552 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.8055 -1.7833 -1.1768 38 1 1.5585 -0.3023 -2.1328 39 1 3.1194 -0.5922 -1.3280 40 1 2.4545 -3.2435 3.2978 41 1 1.4349 -4.6151 1.9556 42 1 1.3712 -5.0016 -1.4124 43 1 1.9472 -6.3162 -0.3598 44 1 0.8776 -7.2187 -2.4069 45 1 -0.6233 -6.3495 -2.0058 46 1 0.7111 -8.4867 -0.2829 47 1 -0.7445 -8.7177 -1.2806 48 1 -2.2278 -5.8481 -0.2486 49 1 -5.2449 -5.1907 -1.5103 50 1 0.6490 -6.9425 1.6809 51 1 -0.8520 -6.0740 2.0822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981451293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:32 Heat of formation + Delta-G solvation = 8.759671 kcal Electronic energy + Delta-G solvation = -30283.713161 eV Core-core repulsion = 26411.191031 eV Total energy + Delta-G solvation = -3872.522130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.53267 -40.66679 -39.16106 -37.65233 -35.83459 -34.61315 -32.67905 -31.99467 -31.75259 -30.21789 -29.38231 -28.08037 -27.97068 -25.65193 -24.45653 -23.68938 -23.22627 -22.59926 -21.11917 -20.16999 -19.35395 -19.15802 -19.05020 -17.38558 -16.97974 -16.49747 -16.27126 -16.02965 -15.72422 -15.59817 -15.33903 -15.24872 -15.10138 -14.99193 -14.76172 -14.39221 -13.82989 -13.64622 -13.39543 -13.33159 -13.02253 -12.94499 -12.81240 -12.78253 -12.54771 -12.35766 -12.31957 -12.11720 -12.06442 -12.02543 -11.90517 -11.75270 -11.52766 -11.40659 -11.28041 -11.04675 -10.76067 -10.48692 -10.47560 -9.92040 -9.62465 -8.90266 -7.86467 -5.13530 0.62326 1.15638 1.48088 1.49606 1.57756 1.85053 2.37962 2.55103 2.60832 3.42218 3.46891 3.72300 3.85277 3.99629 4.08333 4.10548 4.13512 4.17948 4.27927 4.40513 4.46059 4.50887 4.52999 4.55603 4.69823 4.78787 4.82108 4.83308 4.86683 4.89965 4.96170 5.01341 5.08251 5.11803 5.13768 5.17883 5.21614 5.32584 5.37573 5.49006 5.51241 5.52447 5.55822 5.57732 5.66429 5.74298 5.84240 6.33222 6.35469 6.55856 6.84685 7.41223 7.54866 8.22205 8.41954 9.36839 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014790 B = 0.003075 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.733905 B = 9102.996916 C = 9926.619000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 C -0.128 4.128 4 C -0.142 4.142 5 C 0.132 3.868 6 N -0.319 5.319 7 N -0.448 5.448 8 H 0.461 0.539 9 C 0.135 3.865 10 C -0.315 4.315 11 C 0.580 3.420 12 O -0.559 6.559 13 N -0.707 5.707 14 C 0.158 3.842 15 H 0.044 0.956 16 C -0.108 4.108 17 C -0.106 4.106 18 C -0.126 4.126 19 C 0.167 3.833 20 H 0.052 0.948 21 N -0.734 5.734 22 C -0.230 4.230 23 H 0.077 0.923 24 C -0.080 4.080 25 N -0.971 5.971 26 Si 0.966 3.034 27 H -0.289 1.289 28 H -0.302 1.302 29 H -0.269 1.269 30 C -0.114 4.114 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.236 0.764 41 H 0.412 0.588 42 H 0.043 0.957 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.027 0.973 46 H 0.085 0.915 47 H 0.037 0.963 48 H 0.371 0.629 49 H 0.246 0.754 50 H 0.109 0.891 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.809 5.729 11.138 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 C -0.186 4.186 4 C -0.200 4.200 5 C -0.035 4.035 6 N -0.141 5.141 7 N -0.154 5.154 8 H 0.309 0.691 9 C -0.019 4.019 10 C -0.330 4.330 11 C 0.369 3.631 12 O -0.440 6.440 13 N -0.359 5.359 14 C 0.053 3.947 15 H 0.062 0.938 16 C -0.146 4.146 17 C -0.145 4.145 18 C -0.166 4.166 19 C 0.059 3.941 20 H 0.070 0.930 21 N -0.375 5.375 22 C -0.362 4.362 23 H 0.095 0.905 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.796 3.204 27 H -0.216 1.216 28 H -0.229 1.229 29 H -0.194 1.194 30 C -0.153 4.153 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.252 0.748 41 H 0.249 0.751 42 H 0.062 0.938 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.103 0.897 47 H 0.055 0.945 48 H 0.204 0.796 49 H 0.055 0.945 50 H 0.127 0.873 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.887 6.889 10.876 25.393 hybrid contribution -1.451 -0.655 -0.259 1.613 sum 20.436 6.235 10.618 23.859 Atomic orbital electron populations 1.22025 0.93736 1.03328 1.01164 1.18952 0.95365 0.94824 0.89525 1.21753 1.01005 0.93747 1.02051 1.22003 0.99734 1.02614 0.95637 1.22474 0.93904 0.92024 0.95136 1.77102 1.22341 1.13755 1.00891 1.46143 1.41563 1.06794 1.20851 0.69083 1.23750 0.90907 0.93450 0.93827 1.20293 1.15493 0.95737 1.01470 1.17611 0.79627 0.81925 0.83960 1.90692 1.46678 1.78716 1.27913 1.45686 1.52847 1.07354 1.29980 1.20656 0.93314 0.88839 0.91913 0.93778 1.21726 0.98540 0.97852 0.96507 1.21285 0.98522 0.96539 0.98134 1.22054 0.99449 0.97022 0.98062 1.20499 0.86327 0.94189 0.93119 0.93026 1.42746 1.11862 1.06992 1.75880 1.19635 0.92186 0.91970 1.32391 0.90542 1.25497 1.01380 0.96607 1.03704 1.69855 1.29860 1.09467 1.53053 0.85237 0.80127 0.78132 0.76891 1.21616 1.22909 1.19370 1.21954 1.00795 0.95199 0.97329 0.93568 0.92291 0.91359 0.92350 0.91469 0.92715 0.91200 0.92295 0.92981 0.74835 0.75122 0.93848 0.89240 0.91751 0.95408 0.89661 0.94452 0.79568 0.94493 0.87261 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.20 71.98 0.59 -3.76 16 2 C 0.02 0.41 0.75 -52.93 -0.04 0.37 16 3 C -0.13 -2.85 7.94 71.98 0.57 -2.27 16 4 C -0.14 -3.91 8.19 71.98 0.59 -3.32 16 5 C 0.13 3.38 5.64 43.52 0.25 3.63 16 6 N -0.32 -7.06 11.93 -46.67 -0.56 -7.62 16 7 N -0.45 -5.69 7.29 -56.32 -0.41 -6.10 16 8 H 0.46 2.05 8.96 -213.42 -1.91 0.14 16 9 C 0.13 1.66 11.52 84.28 0.97 2.63 16 10 C -0.31 -7.24 5.89 -20.15 -0.12 -7.36 16 11 C 0.58 16.63 7.17 86.66 0.62 17.26 16 12 O -0.56 -21.11 10.06 -4.06 -0.04 -21.15 16 13 N -0.71 -16.41 5.07 -445.81 -2.26 -18.67 16 14 C 0.16 4.80 2.28 44.99 0.10 4.90 16 15 H 0.04 1.89 5.94 -2.39 -0.01 1.87 16 16 C -0.11 -3.10 5.49 30.59 0.17 -2.93 16 17 C -0.11 -3.60 5.77 30.59 0.18 -3.42 16 18 C -0.13 -4.07 5.61 30.59 0.17 -3.90 16 19 C 0.17 6.04 3.10 45.01 0.14 6.18 16 20 H 0.05 1.85 8.08 -2.39 -0.02 1.84 16 21 N -0.73 -36.30 4.28 -322.87 -1.38 -37.68 16 22 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 23 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 25 N -0.97 -61.68 13.06 21.65 0.28 -61.40 16 26 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 27 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 28 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 29 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 30 C -0.11 -3.14 5.08 30.61 0.16 -2.98 16 31 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 32 H 0.06 1.70 8.07 -2.38 -0.02 1.68 16 33 H 0.07 2.48 4.75 -2.39 -0.01 2.47 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.07 1.33 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 2.27 4.61 -2.39 -0.01 2.26 16 38 H 0.06 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.05 1.27 8.13 -2.39 -0.02 1.25 16 40 H 0.24 0.26 7.48 -2.91 -0.02 0.24 16 41 H 0.41 5.59 7.55 -92.71 -0.70 4.89 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.03 1.21 7.60 -2.39 -0.02 1.19 16 46 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 48 H 0.37 20.48 6.06 -92.70 -0.56 19.91 16 49 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 50 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 51 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -79.50 391.60 1.09 -78.41 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: -2.21 Total: 36.03 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.64 Total: -11.06 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -4.32 Total: -131.48 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.04 Total: -21.15 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -79.50 1.09 -78.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981451293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.169 kcal (2) G-P(sol) polarization free energy of solvation -79.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds