Wall clock time and date at job start Tue Mar 31 2020 19:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47256 * 2 1 4 4 C 1.50693 * 109.46960 * 120.00347 * 2 1 3 5 5 C 1.35364 * 126.38585 * 324.68584 * 4 2 1 6 6 C 1.41510 * 105.50538 * 179.86830 * 5 4 2 7 7 C 1.47708 * 126.52149 * 180.14873 * 6 5 4 8 8 O 1.21571 * 119.99993 * 6.96505 * 7 6 5 9 9 N 1.34778 * 120.00266 * 186.96226 * 7 6 5 10 10 C 1.46928 * 120.62483 * 6.72610 * 9 7 6 11 11 C 1.53621 * 108.54015 * 126.36909 * 10 9 7 12 12 C 1.53043 * 109.24349 * 54.85625 * 11 10 9 13 13 N 1.46501 * 109.45305 * 178.49934 * 12 11 10 14 14 C 1.46505 * 119.99921 * 60.05510 * 13 12 11 15 15 C 1.36935 * 120.00098 * 240.06297 * 13 12 11 16 16 H 1.08002 * 119.99921 * 22.94951 * 15 13 12 17 17 C 1.38807 * 120.00217 * 202.96448 * 15 13 12 18 18 N 1.31621 * 119.99978 * 11.00381 * 17 15 13 19 19 Si 1.86798 * 120.00015 * 191.01454 * 17 15 13 20 20 H 1.48502 * 109.47474 * 89.99691 * 19 17 15 21 21 H 1.48508 * 109.46868 * 209.99239 * 19 17 15 22 22 H 1.48499 * 109.47154 * 329.98946 * 19 17 15 23 23 C 1.53051 * 109.53554 * 298.50987 * 12 11 10 24 24 C 1.46917 * 120.63393 * 187.00706 * 9 7 6 25 25 N 1.31811 * 106.95702 * 0.39720 * 6 5 4 26 26 N 1.28462 * 110.07878 * 359.75340 * 25 6 5 27 27 C 1.46499 * 124.88702 * 180.02562 * 26 25 6 28 28 H 1.09000 * 109.47114 * 300.00146 * 1 2 3 29 29 H 1.08996 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47401 * 59.99705 * 1 2 3 31 31 H 1.09000 * 109.46600 * 239.99970 * 2 1 3 32 32 H 1.09000 * 109.47178 * 59.99894 * 3 2 1 33 33 H 1.09003 * 109.47001 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47440 * 300.00137 * 3 2 1 35 35 H 1.08000 * 127.25343 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.58348 * 246.19789 * 10 9 7 37 37 H 1.08998 * 109.58968 * 6.62702 * 10 9 7 38 38 H 1.09002 * 109.63817 * 294.86279 * 11 10 9 39 39 H 1.08996 * 109.43362 * 174.71734 * 11 10 9 40 40 H 1.09003 * 109.46335 * 58.52790 * 12 11 10 41 41 H 1.08999 * 109.46846 * 85.97502 * 14 13 12 42 42 H 1.09000 * 109.46615 * 205.97057 * 14 13 12 43 43 H 1.08996 * 109.46845 * 325.97069 * 14 13 12 44 44 H 0.96997 * 119.99748 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.49542 * 301.41271 * 23 12 11 46 46 H 1.08998 * 109.52237 * 181.33114 * 23 12 11 47 47 H 1.09008 * 109.58777 * 353.37081 * 24 9 7 48 48 H 1.08998 * 109.59248 * 113.65399 * 24 9 7 49 49 H 1.09002 * 109.46807 * 269.97064 * 27 26 25 50 50 H 1.08995 * 109.47230 * 29.96738 * 27 26 25 51 51 H 1.09000 * 109.47331 * 149.97341 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4615 -0.6917 2.4577 6 6 2.2885 -1.5015 3.2718 7 6 2.0887 -1.8015 4.7043 8 8 1.0723 -1.4404 5.2649 9 7 3.0333 -2.4756 5.3898 10 6 4.3273 -2.7901 4.7691 11 6 5.4470 -2.2732 5.6851 12 6 5.2634 -2.8600 7.0866 13 7 6.3493 -2.3984 7.9549 14 6 6.5372 -0.9652 8.1939 15 6 7.1887 -3.3064 8.5430 16 1 7.3099 -4.2887 8.1107 17 6 7.8836 -2.9646 9.6950 18 7 7.5796 -1.8604 10.3437 19 14 9.2504 -4.0714 10.3244 20 1 10.5418 -3.6559 9.7203 21 1 9.3368 -3.9594 11.8027 22 1 8.9592 -5.4788 9.9508 23 6 3.9210 -2.4017 7.6615 24 6 2.7863 -2.9152 6.7697 25 7 3.2740 -1.9327 2.5101 26 7 3.1389 -1.4797 1.3156 27 6 4.0532 -1.7582 0.2054 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 0.5627 -0.1708 2.7528 36 1 4.4210 -3.8691 4.6461 37 1 4.3944 -2.3022 3.7966 38 1 5.4043 -1.1853 5.7377 39 1 6.4133 -2.5809 5.2857 40 1 5.2815 -3.9484 7.0298 41 1 5.9019 -0.6485 9.0210 42 1 7.5807 -0.7722 8.4426 43 1 6.2688 -0.4089 7.2958 44 1 8.0655 -1.6214 11.1485 45 1 3.8927 -1.3126 7.6955 46 1 3.8010 -2.8004 8.6688 47 1 1.8361 -2.5099 7.1178 48 1 2.7542 -4.0041 6.8062 49 1 4.8359 -0.9999 0.1805 50 1 4.5038 -2.7409 0.3436 51 1 3.5003 -1.7407 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985430978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:37 Heat of formation + Delta-G solvation = 73.466937 kcal Electronic energy + Delta-G solvation = -29792.662489 eV Core-core repulsion = 25922.946277 eV Total energy + Delta-G solvation = -3869.716212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.91247 -39.62565 -37.31962 -36.15770 -34.94778 -33.71291 -32.08855 -30.77553 -29.81384 -29.57671 -27.63593 -27.57727 -25.93442 -24.98312 -23.55332 -22.75089 -22.52528 -21.46207 -20.29877 -19.50576 -18.34948 -17.25112 -16.69043 -16.54436 -16.51217 -15.58422 -15.00467 -14.92589 -14.75096 -14.36450 -14.07280 -13.83348 -13.64230 -13.51555 -13.37781 -13.19581 -13.10226 -12.88338 -12.78113 -12.55194 -12.25859 -12.11797 -12.00725 -11.68481 -11.63918 -11.37592 -11.27156 -10.89515 -10.82420 -10.75526 -10.49673 -10.24731 -10.15391 -10.00340 -9.80709 -9.74633 -9.44536 -9.20311 -9.05015 -8.47141 -8.28155 -6.67441 -5.68080 -3.12199 1.52995 1.99987 2.24361 3.25397 3.40700 3.46631 3.48275 3.54035 4.06146 4.16771 4.38978 4.52646 4.61316 4.68508 4.75058 4.88747 5.04156 5.11656 5.23172 5.31072 5.35289 5.39741 5.43920 5.45206 5.46775 5.60040 5.63848 5.64363 5.68941 5.81230 5.83544 5.88748 5.95324 6.06137 6.15000 6.28399 6.39081 6.41517 6.52859 6.63436 6.67796 6.81001 6.95059 7.10724 7.13965 7.48721 7.62827 7.77085 7.84338 7.86554 8.39094 8.47622 9.30131 9.93871 10.44168 11.38102 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002522 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.347964 B =11100.561917 C =11588.264004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.017 3.983 5 C -0.174 4.174 6 C -0.004 4.004 7 C 0.599 3.401 8 O -0.543 6.543 9 N -0.592 5.592 10 C 0.090 3.910 11 C -0.144 4.144 12 C 0.178 3.822 13 N -0.596 5.596 14 C 0.163 3.837 15 C -0.250 4.250 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.909 5.909 19 Si 0.905 3.095 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.143 4.143 24 C 0.114 3.886 25 N -0.257 5.257 26 N -0.286 5.286 27 C 0.084 3.916 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.159 0.841 36 H 0.062 0.938 37 H 0.119 0.881 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.015 0.985 42 H 0.058 0.942 43 H -0.007 1.007 44 H 0.252 0.748 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.086 0.914 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 2.991 -25.258 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.202 4.202 4 C -0.107 4.107 5 C -0.202 4.202 6 C -0.164 4.164 7 C 0.385 3.615 8 O -0.420 6.420 9 N -0.324 5.324 10 C -0.033 4.033 11 C -0.184 4.184 12 C 0.070 3.930 13 N -0.318 5.318 14 C 0.019 3.981 15 C -0.380 4.380 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.554 5.554 19 Si 0.735 3.265 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.183 4.183 24 C -0.009 4.009 25 N -0.092 5.092 26 N -0.073 5.073 27 C -0.057 4.057 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.177 0.823 36 H 0.080 0.920 37 H 0.136 0.864 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.076 0.924 43 H 0.011 0.989 44 H 0.062 0.938 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.104 0.896 50 H 0.116 0.884 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.668 2.553 -24.846 27.159 hybrid contribution 0.313 -0.113 0.513 0.611 sum -10.355 2.440 -24.333 26.557 Atomic orbital electron populations 1.21828 0.93045 1.02587 1.02655 1.19668 0.96780 0.95448 0.92422 1.21855 1.01128 0.94538 1.02724 1.21342 0.91006 1.00313 0.98076 1.21422 1.03094 1.04647 0.91042 1.21947 0.95513 1.03681 0.95212 1.16993 0.83160 0.77826 0.83474 1.90754 1.28853 1.53358 1.69003 1.47995 1.15323 1.54565 1.14472 1.22575 0.81397 1.00785 0.98562 1.22510 0.97309 1.01178 0.97424 1.20319 0.86992 0.96913 0.88777 1.43970 1.30946 1.02644 1.54229 1.20742 1.00978 0.82592 0.93805 1.19254 1.18166 0.96165 1.04428 0.91478 1.25028 1.00819 0.97920 0.96146 1.70077 1.41840 1.25146 1.18372 0.86245 0.82269 0.80127 0.77828 1.21616 1.21809 1.20558 1.22464 0.95397 1.01416 0.99058 1.21735 1.00186 0.98829 0.80104 1.73494 1.22851 1.21610 0.91284 1.45509 1.19185 1.34609 1.07954 1.22159 0.92973 1.04439 0.86109 0.91649 0.92173 0.91815 0.90267 0.91742 0.92660 0.91738 0.82304 0.91984 0.86385 0.92259 0.91116 0.92042 0.96700 0.92354 0.98899 0.93820 0.92219 0.90672 0.89596 0.91648 0.89649 0.88361 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.79 37.16 0.33 -0.49 16 2 C -0.02 -0.14 3.09 -91.78 -0.28 -0.43 16 3 C -0.14 -0.82 9.18 37.15 0.34 -0.48 16 4 C 0.02 0.16 5.84 -82.21 -0.48 -0.32 16 5 C -0.17 -2.18 9.97 -39.36 -0.39 -2.57 16 6 C 0.00 -0.06 6.83 -82.76 -0.57 -0.63 16 7 C 0.60 10.44 7.69 -12.39 -0.10 10.34 16 8 O -0.54 -10.72 16.36 5.30 0.09 -10.64 16 9 N -0.59 -9.94 2.97 -173.67 -0.52 -10.46 16 10 C 0.09 1.41 6.14 -3.49 -0.02 1.39 16 11 C -0.14 -2.60 5.31 -26.39 -0.14 -2.74 16 12 C 0.18 3.72 2.56 -67.88 -0.17 3.55 16 13 N -0.60 -15.16 2.81 -173.43 -0.49 -15.65 16 14 C 0.16 4.18 8.10 59.85 0.48 4.66 16 15 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 16 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.00 -0.04 5.09 -17.43 -0.09 -0.13 16 18 N -0.91 -26.93 10.65 55.49 0.59 -26.34 16 19 Si 0.90 22.08 29.57 -169.99 -5.03 17.06 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.14 -2.80 5.34 -26.61 -0.14 -2.94 16 24 C 0.11 1.93 6.44 -3.72 -0.02 1.90 16 25 N -0.26 -3.40 8.45 33.42 0.28 -3.12 16 26 N -0.29 -2.86 3.70 -63.85 -0.24 -3.10 16 27 C 0.08 0.44 11.11 59.85 0.66 1.11 16 28 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.35 6.86 -51.93 -0.36 -0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.16 1.86 7.48 -52.49 -0.39 1.47 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.12 1.76 4.16 -71.58 -0.30 1.46 16 38 H 0.06 1.14 6.75 -51.93 -0.35 0.79 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.29 7.86 -51.93 -0.41 0.88 16 41 H 0.01 0.40 7.85 -51.93 -0.41 0.00 16 42 H 0.06 1.61 6.65 -51.93 -0.35 1.27 16 43 H -0.01 -0.17 6.47 -51.93 -0.34 -0.51 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16 46 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 47 H 0.09 1.48 7.00 -51.92 -0.36 1.12 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.25 6.88 -51.93 -0.36 -0.11 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -34.01 395.59 -8.67 -42.68 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.59 Total: -1.57 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -0.73 Total: 5.16 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.37 Total: -58.66 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.01 -8.67 -42.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985430978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.151 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds