Wall clock time and date at job start Tue Mar 31 2020 19:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47256 * 2 1 4 4 C 1.50693 * 109.46960 * 120.00347 * 2 1 3 5 5 C 1.35364 * 126.38585 * 324.68584 * 4 2 1 6 6 C 1.41510 * 105.50538 * 179.86830 * 5 4 2 7 7 C 1.47708 * 126.52149 * 180.14873 * 6 5 4 8 8 O 1.21571 * 119.99993 * 6.96505 * 7 6 5 9 9 N 1.34778 * 120.00266 * 186.96226 * 7 6 5 10 10 C 1.46928 * 120.62483 * 6.72610 * 9 7 6 11 11 C 1.53621 * 108.54015 * 126.36909 * 10 9 7 12 12 C 1.53043 * 109.24349 * 54.85625 * 11 10 9 13 13 N 1.46501 * 109.45305 * 178.49934 * 12 11 10 14 14 C 1.46505 * 119.99921 * 60.05510 * 13 12 11 15 15 C 1.36935 * 120.00098 * 240.06297 * 13 12 11 16 16 H 1.08002 * 119.99921 * 22.94951 * 15 13 12 17 17 C 1.38807 * 120.00217 * 202.96448 * 15 13 12 18 18 N 1.31621 * 119.99978 * 11.00381 * 17 15 13 19 19 Si 1.86798 * 120.00015 * 191.01454 * 17 15 13 20 20 H 1.48502 * 109.47474 * 89.99691 * 19 17 15 21 21 H 1.48508 * 109.46868 * 209.99239 * 19 17 15 22 22 H 1.48499 * 109.47154 * 329.98946 * 19 17 15 23 23 C 1.53051 * 109.53554 * 298.50987 * 12 11 10 24 24 C 1.46917 * 120.63393 * 187.00706 * 9 7 6 25 25 N 1.31811 * 106.95702 * 0.39720 * 6 5 4 26 26 N 1.28462 * 110.07878 * 359.75340 * 25 6 5 27 27 C 1.46499 * 124.88702 * 180.02562 * 26 25 6 28 28 H 1.09000 * 109.47114 * 300.00146 * 1 2 3 29 29 H 1.08996 * 109.47392 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47401 * 59.99705 * 1 2 3 31 31 H 1.09000 * 109.46600 * 239.99970 * 2 1 3 32 32 H 1.09000 * 109.47178 * 59.99894 * 3 2 1 33 33 H 1.09003 * 109.47001 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47440 * 300.00137 * 3 2 1 35 35 H 1.08000 * 127.25343 * 0.02562 * 5 4 2 36 36 H 1.09003 * 109.58348 * 246.19789 * 10 9 7 37 37 H 1.08998 * 109.58968 * 6.62702 * 10 9 7 38 38 H 1.09002 * 109.63817 * 294.86279 * 11 10 9 39 39 H 1.08996 * 109.43362 * 174.71734 * 11 10 9 40 40 H 1.09003 * 109.46335 * 58.52790 * 12 11 10 41 41 H 1.08999 * 109.46846 * 85.97502 * 14 13 12 42 42 H 1.09000 * 109.46615 * 205.97057 * 14 13 12 43 43 H 1.08996 * 109.46845 * 325.97069 * 14 13 12 44 44 H 0.96997 * 119.99748 * 180.02562 * 18 17 15 45 45 H 1.08995 * 109.49542 * 301.41271 * 23 12 11 46 46 H 1.08998 * 109.52237 * 181.33114 * 23 12 11 47 47 H 1.09008 * 109.58777 * 353.37081 * 24 9 7 48 48 H 1.08998 * 109.59248 * 113.65399 * 24 9 7 49 49 H 1.09002 * 109.46807 * 269.97064 * 27 26 25 50 50 H 1.08995 * 109.47230 * 29.96738 * 27 26 25 51 51 H 1.09000 * 109.47331 * 149.97341 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.4615 -0.6917 2.4577 6 6 2.2885 -1.5015 3.2718 7 6 2.0887 -1.8015 4.7043 8 8 1.0723 -1.4404 5.2649 9 7 3.0333 -2.4756 5.3898 10 6 4.3273 -2.7901 4.7691 11 6 5.4470 -2.2732 5.6851 12 6 5.2634 -2.8600 7.0866 13 7 6.3493 -2.3984 7.9549 14 6 6.5372 -0.9652 8.1939 15 6 7.1887 -3.3064 8.5430 16 1 7.3099 -4.2887 8.1107 17 6 7.8836 -2.9646 9.6950 18 7 7.5796 -1.8604 10.3437 19 14 9.2504 -4.0714 10.3244 20 1 10.5418 -3.6559 9.7203 21 1 9.3368 -3.9594 11.8027 22 1 8.9592 -5.4788 9.9508 23 6 3.9210 -2.4017 7.6615 24 6 2.7863 -2.9152 6.7697 25 7 3.2740 -1.9327 2.5101 26 7 3.1389 -1.4797 1.3156 27 6 4.0532 -1.7582 0.2054 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 0.5627 -0.1708 2.7528 36 1 4.4210 -3.8691 4.6461 37 1 4.3944 -2.3022 3.7966 38 1 5.4043 -1.1853 5.7377 39 1 6.4133 -2.5809 5.2857 40 1 5.2815 -3.9484 7.0298 41 1 5.9019 -0.6485 9.0210 42 1 7.5807 -0.7722 8.4426 43 1 6.2688 -0.4089 7.2958 44 1 8.0655 -1.6214 11.1485 45 1 3.8927 -1.3126 7.6955 46 1 3.8010 -2.8004 8.6688 47 1 1.8361 -2.5099 7.1178 48 1 2.7542 -4.0041 6.8062 49 1 4.8359 -0.9999 0.1805 50 1 4.5038 -2.7409 0.3436 51 1 3.5003 -1.7407 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985430978.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:36 Heat of formation + Delta-G solvation = 53.369207 kcal Electronic energy + Delta-G solvation = -29793.533992 eV Core-core repulsion = 25922.946277 eV Total energy + Delta-G solvation = -3870.587715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.78896 -41.00615 -38.92301 -36.83370 -36.59885 -34.56222 -33.86472 -32.18551 -31.47175 -30.59493 -28.47410 -28.05025 -28.00328 -26.47693 -24.72050 -24.13288 -23.62488 -22.83496 -21.34181 -20.74090 -19.65905 -18.78133 -18.10021 -17.72524 -17.33581 -16.98260 -16.81026 -16.11143 -15.73415 -15.50015 -15.24325 -15.14453 -14.88218 -14.71294 -14.67350 -14.51387 -13.99995 -13.94573 -13.83837 -13.49129 -13.36098 -13.28443 -13.08026 -12.96148 -12.80808 -12.69902 -12.53853 -12.35324 -12.26247 -12.09233 -12.06512 -11.88478 -11.75061 -11.73909 -11.42525 -11.32517 -10.93583 -10.57396 -10.13619 -9.91231 -9.65132 -8.76088 -7.82528 -5.29395 0.47825 1.11318 1.47367 1.48315 1.51609 1.57418 2.01476 2.31385 2.51657 3.22021 3.32180 3.51805 3.60179 3.73519 3.91259 4.01889 4.16786 4.18856 4.20820 4.30528 4.35313 4.36671 4.42973 4.50035 4.55607 4.63395 4.68102 4.72502 4.75655 4.80221 4.84578 4.91260 4.92290 4.98992 5.00789 5.03993 5.06814 5.17104 5.21961 5.30095 5.39302 5.42019 5.46022 5.47343 5.60110 5.65485 5.69014 5.93424 6.32776 6.36031 6.84125 7.11460 7.15913 7.88030 8.34387 9.22717 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021967 B = 0.002522 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.347964 B =11100.561917 C =11588.264004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.019 4.019 3 C -0.143 4.143 4 C 0.035 3.965 5 C -0.196 4.196 6 C -0.038 4.038 7 C 0.595 3.405 8 O -0.577 6.577 9 N -0.595 5.595 10 C 0.101 3.899 11 C -0.130 4.130 12 C 0.174 3.826 13 N -0.611 5.611 14 C 0.182 3.818 15 C -0.258 4.258 16 H 0.075 0.925 17 C -0.058 4.058 18 N -0.943 5.943 19 Si 0.972 3.028 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.266 1.266 23 C -0.131 4.131 24 C 0.123 3.877 25 N -0.268 5.268 26 N -0.276 5.276 27 C 0.069 3.931 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.079 0.921 37 H 0.132 0.868 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.065 0.935 41 H -0.013 1.013 42 H 0.032 0.968 43 H 0.015 0.985 44 H 0.247 0.753 45 H 0.039 0.961 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.100 0.900 50 H 0.105 0.895 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.959 2.033 -29.000 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.201 4.201 4 C -0.091 4.091 5 C -0.225 4.225 6 C -0.195 4.195 7 C 0.384 3.616 8 O -0.456 6.456 9 N -0.326 5.326 10 C -0.022 4.022 11 C -0.170 4.170 12 C 0.067 3.933 13 N -0.333 5.333 14 C 0.037 3.963 15 C -0.388 4.388 16 H 0.093 0.907 17 C -0.253 4.253 18 N -0.590 5.590 19 Si 0.801 3.199 20 H -0.213 1.213 21 H -0.225 1.225 22 H -0.191 1.191 23 C -0.171 4.171 24 C 0.000 4.000 25 N -0.104 5.104 26 N -0.063 5.063 27 C -0.069 4.069 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.097 0.903 37 H 0.149 0.851 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.006 0.994 42 H 0.051 0.949 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.105 0.895 49 H 0.119 0.881 50 H 0.123 0.877 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.331 1.568 -28.632 30.479 hybrid contribution 0.181 0.217 1.533 1.558 sum -10.150 1.785 -27.100 28.993 Atomic orbital electron populations 1.21843 0.92797 1.02399 1.03142 1.19851 0.96921 0.95562 0.91592 1.21850 1.01149 0.94098 1.02998 1.21807 0.90005 0.98936 0.98316 1.21548 1.03499 1.05252 0.92154 1.21665 0.97491 1.06020 0.94308 1.17384 0.82627 0.77004 0.84630 1.90717 1.30148 1.54646 1.70097 1.48062 1.15793 1.54554 1.14232 1.22584 0.79660 1.01784 0.98190 1.22328 0.98691 0.99985 0.96023 1.20525 0.86072 0.97235 0.89433 1.44201 1.32191 1.02210 1.54698 1.20413 0.98655 0.83475 0.93736 1.19626 1.18240 0.96617 1.04307 0.90737 1.25840 1.03318 0.99462 0.96659 1.70256 1.43034 1.27010 1.18733 0.85183 0.79259 0.78944 0.76549 1.21279 1.22475 1.19082 1.22260 0.96043 0.99954 0.98829 1.21599 0.98558 0.99864 0.80002 1.73288 1.22499 1.22128 0.92529 1.45966 1.19450 1.33128 1.07784 1.22663 0.93221 1.05380 0.85664 0.92883 0.92710 0.89684 0.87300 0.93417 0.92599 0.89589 0.82685 0.90297 0.85125 0.93769 0.90670 0.91693 0.99426 0.94904 0.96643 0.94403 0.94252 0.92352 0.90085 0.89533 0.88116 0.87679 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.79 71.98 0.63 -0.66 16 2 C -0.02 -0.17 3.09 -11.54 -0.04 -0.21 16 3 C -0.14 -1.21 9.18 71.98 0.66 -0.55 16 4 C 0.03 0.60 5.84 41.40 0.24 0.84 16 5 C -0.20 -4.86 9.97 22.41 0.22 -4.63 16 6 C -0.04 -1.11 6.83 42.46 0.29 -0.82 16 7 C 0.60 21.02 7.69 86.75 0.67 21.68 16 8 O -0.58 -23.54 16.36 -3.94 -0.06 -23.60 16 9 N -0.60 -19.84 2.97 -821.64 -2.44 -22.28 16 10 C 0.10 3.00 6.14 86.51 0.53 3.53 16 11 C -0.13 -4.60 5.31 30.82 0.16 -4.44 16 12 C 0.17 7.25 2.56 45.02 0.12 7.36 16 13 N -0.61 -31.46 2.81 -702.60 -1.98 -33.43 16 14 C 0.18 9.61 8.10 127.77 1.04 10.64 16 15 C -0.26 -14.30 9.59 84.03 0.81 -13.49 16 16 H 0.07 3.95 7.81 -2.91 -0.02 3.93 16 17 C -0.06 -3.33 5.09 84.86 0.43 -2.90 16 18 N -0.94 -57.40 10.65 21.65 0.23 -57.16 16 19 Si 0.97 45.67 29.57 68.60 2.03 47.70 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 C -0.13 -5.22 5.34 30.67 0.16 -5.06 16 24 C 0.12 4.15 6.44 86.36 0.56 4.71 16 25 N -0.27 -6.63 8.45 -48.17 -0.41 -7.04 16 26 N -0.28 -4.79 3.70 -355.94 -1.32 -6.10 16 27 C 0.07 0.45 11.11 127.77 1.42 1.87 16 28 H 0.05 0.61 7.36 -2.39 -0.02 0.59 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.11 0.39 6.86 -2.39 -0.02 0.38 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.16 3.78 7.48 -2.91 -0.02 3.76 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.13 3.68 4.16 -27.80 -0.12 3.57 16 38 H 0.04 1.69 6.75 -2.39 -0.02 1.67 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.06 2.66 7.86 -2.39 -0.02 2.64 16 41 H -0.01 -0.72 7.85 -2.39 -0.02 -0.74 16 42 H 0.03 1.86 6.65 -2.39 -0.02 1.84 16 43 H 0.02 0.72 6.47 -2.39 -0.02 0.71 16 44 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.04 1.71 7.72 -2.39 -0.02 1.69 16 46 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.08 2.85 7.00 -2.38 -0.02 2.84 16 48 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 49 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 50 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.13 0.01 6.88 -2.39 -0.02 -0.01 16 Total: -1.00 -76.10 395.59 4.77 -71.33 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.81 Total: 12.71 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: 7.90 Total: 17.88 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -5.90 Total: -126.01 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.06 Total: -23.60 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.10 4.77 -71.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985430978.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.703 kcal (2) G-P(sol) polarization free energy of solvation -76.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds