Wall clock time and date at job start Tue Mar 31 2020 20:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36928 * 120.00429 * 2 1 4 4 H 1.08006 * 120.00570 * 204.12275 * 3 2 1 5 5 C 1.38820 * 119.99932 * 24.12692 * 3 2 1 6 6 N 1.31616 * 119.99607 * 15.83544 * 5 3 2 7 7 Si 1.86795 * 119.99857 * 195.83490 * 5 3 2 8 8 H 1.48498 * 109.47476 * 59.99857 * 7 5 3 9 9 H 1.48500 * 109.47042 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47606 * 299.99840 * 7 5 3 11 11 C 1.46504 * 119.99548 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46530 * 300.00448 * 11 2 1 13 13 C 1.53189 * 109.31528 * 181.37548 * 12 11 2 14 14 N 1.46930 * 108.77137 * 305.36027 * 13 12 11 15 15 C 1.34781 * 120.62948 * 233.58607 * 14 13 12 16 16 O 1.21629 * 120.00114 * 8.87219 * 15 14 13 17 17 C 1.47158 * 119.99902 * 188.87731 * 15 14 13 18 18 C 1.38409 * 126.88517 * 208.91832 * 17 15 14 19 19 C 1.39666 * 105.36028 * 180.29198 * 18 17 15 20 20 C 1.50710 * 126.06752 * 179.71741 * 19 18 17 21 21 C 1.52996 * 109.47000 * 75.00402 * 20 19 18 22 22 C 1.52998 * 109.46759 * 194.99999 * 20 19 18 23 23 C 1.52994 * 109.47022 * 315.00040 * 20 19 18 24 24 N 1.30862 * 107.86306 * 359.56628 * 19 18 17 25 25 N 1.28442 * 110.92589 * 0.45312 * 24 19 18 26 26 H 0.97003 * 125.18944 * 179.67646 * 25 24 19 27 27 C 1.46926 * 118.73972 * 53.86524 * 14 13 12 28 28 C 1.53046 * 109.44995 * 60.06809 * 11 2 1 29 29 H 1.08999 * 109.47677 * 273.86824 * 1 2 3 30 30 H 1.09001 * 109.46860 * 33.86369 * 1 2 3 31 31 H 1.08999 * 109.47510 * 153.86602 * 1 2 3 32 32 H 0.97001 * 119.99153 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.45642 * 180.02562 * 11 2 1 34 34 H 1.08996 * 109.49938 * 61.41666 * 12 11 2 35 35 H 1.09007 * 109.49193 * 301.32181 * 12 11 2 36 36 H 1.08998 * 109.58562 * 185.57828 * 13 12 11 37 37 H 1.08993 * 109.70771 * 65.21784 * 13 12 11 38 38 H 1.08004 * 127.31532 * 0.03295 * 18 17 15 39 39 H 1.08999 * 109.47664 * 60.00146 * 21 20 19 40 40 H 1.08998 * 109.47035 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.46998 * 299.99968 * 21 20 19 42 42 H 1.09000 * 109.47282 * 60.00343 * 22 20 19 43 43 H 1.09003 * 109.47196 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.47746 * 300.00075 * 22 20 19 45 45 H 1.09006 * 109.46965 * 60.00039 * 23 20 19 46 46 H 1.08998 * 109.47411 * 179.97438 * 23 20 19 47 47 H 1.09001 * 109.47548 * 300.00606 * 23 20 19 48 48 H 1.09000 * 109.58711 * 65.92253 * 27 14 13 49 49 H 1.08999 * 109.58864 * 186.35079 * 27 14 13 50 50 H 1.09002 * 109.49402 * 298.57037 * 28 11 2 51 51 H 1.08998 * 109.50011 * 58.66417 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1590 1.2267 -0.3823 5 6 1.5466 2.3355 0.4914 6 7 0.4626 2.2447 1.2323 7 14 2.2736 4.0113 0.1011 8 1 2.2879 4.2144 -1.3699 9 1 1.4490 5.0692 0.7383 10 1 3.6617 4.0828 0.6240 11 6 2.1974 -1.2688 0.0006 12 6 1.8274 -2.0706 1.2504 13 6 2.6207 -3.3810 1.2650 14 7 2.3841 -4.0911 0.0007 15 6 1.9576 -5.3697 0.0006 16 8 1.6109 -5.8952 1.0412 17 6 1.9116 -6.1298 -1.2586 18 6 1.0473 -7.1640 -1.5736 19 6 1.3992 -7.5596 -2.8660 20 6 0.7535 -8.6641 -3.6626 21 6 -0.6087 -8.1933 -4.1760 22 6 1.6481 -9.0269 -4.8495 23 6 0.5656 -9.8931 -2.7710 24 7 2.3869 -6.7989 -3.2637 25 7 2.7137 -5.9566 -2.3507 26 1 3.4223 -5.2984 -2.4251 27 6 2.6271 -3.3829 -1.2635 28 6 1.8285 -2.0707 -1.2497 29 1 -0.3634 0.0693 1.0253 30 1 -0.3633 0.8534 -0.5726 31 1 -0.3634 -0.9226 -0.4526 32 1 0.0410 3.0482 1.5754 33 1 3.2690 -1.0694 0.0009 34 1 0.7601 -2.2916 1.2383 35 1 2.0690 -1.4892 2.1403 36 1 2.2893 -3.9996 2.0990 37 1 3.6841 -3.1658 1.3697 38 1 0.2693 -7.5798 -0.9505 39 1 -0.4749 -7.3177 -4.8112 40 1 -1.0760 -8.9922 -4.7517 41 1 -1.2461 -7.9347 -3.3303 42 1 2.6186 -9.3623 -4.4838 43 1 1.1814 -9.8260 -5.4254 44 1 1.7821 -8.1513 -5.4847 45 1 -0.0718 -9.6345 -1.9254 46 1 0.0981 -10.6918 -3.3470 47 1 1.5361 -10.2285 -2.4052 48 1 3.6907 -3.1656 -1.3620 49 1 2.2999 -4.0027 -2.0983 50 1 0.7612 -2.2917 -1.2384 51 1 2.0707 -1.4894 -2.1394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985513399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:37 Heat of formation + Delta-G solvation = 58.171092 kcal Electronic energy + Delta-G solvation = -29701.296247 eV Core-core repulsion = 25830.916757 eV Total energy + Delta-G solvation = -3870.379490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.85439 -39.90936 -37.59650 -37.17358 -35.19187 -32.46240 -31.49158 -31.23312 -30.33453 -29.68659 -27.50769 -27.45971 -26.05010 -25.39078 -23.44960 -23.25894 -22.56861 -21.63801 -20.59405 -19.34222 -18.78833 -17.74597 -16.82763 -16.47022 -15.96108 -15.83103 -15.06159 -15.03287 -14.89162 -14.20173 -14.15959 -14.02723 -13.89125 -13.69114 -13.46160 -13.40850 -13.11020 -12.55820 -12.44964 -12.38488 -12.34392 -11.87766 -11.83508 -11.56732 -11.53799 -11.30569 -11.23382 -11.06442 -10.95059 -10.80455 -10.71405 -10.48152 -10.32662 -10.24620 -10.06667 -9.90914 -9.67424 -9.28133 -9.26263 -8.68661 -8.55288 -6.78999 -5.77387 -3.24176 1.18684 2.36152 2.57440 2.76651 3.14780 3.34908 3.41332 3.41621 4.10112 4.31976 4.44064 4.54040 4.75943 4.77766 4.92366 5.08333 5.09746 5.19742 5.24792 5.31308 5.40079 5.40564 5.41680 5.47715 5.52913 5.57742 5.66869 5.68071 5.69363 5.75652 5.83181 5.88458 5.91349 6.04347 6.08746 6.12343 6.14001 6.24712 6.31104 6.43978 6.48733 6.71973 6.77141 6.89227 6.93376 7.27369 7.29725 7.67357 7.75231 7.80228 7.99705 8.35744 9.18120 9.82058 10.32423 11.27250 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002438 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.811912 B =11483.717340 C =11891.841611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.593 5.593 3 C -0.260 4.260 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.902 5.902 7 Si 0.903 3.097 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.180 3.820 12 C -0.145 4.145 13 C 0.115 3.885 14 N -0.602 5.602 15 C 0.588 3.412 16 O -0.526 6.526 17 C -0.026 4.026 18 C -0.155 4.155 19 C 0.040 3.960 20 C 0.017 3.983 21 C -0.138 4.138 22 C -0.135 4.135 23 C -0.139 4.139 24 N -0.270 5.270 25 N -0.381 5.381 26 H 0.446 0.554 27 C 0.095 3.905 28 C -0.145 4.145 29 H 0.029 0.971 30 H 0.038 0.962 31 H 0.000 1.000 32 H 0.253 0.747 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.160 0.840 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.075 0.925 50 H 0.064 0.936 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.419 -21.292 -9.484 23.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.314 5.314 3 C -0.390 4.390 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.546 5.546 7 Si 0.733 3.267 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.007 4.007 14 N -0.335 5.335 15 C 0.374 3.626 16 O -0.400 6.400 17 C -0.154 4.154 18 C -0.184 4.184 19 C -0.118 4.118 20 C 0.015 3.985 21 C -0.196 4.196 22 C -0.192 4.192 23 C -0.197 4.197 24 N -0.102 5.102 25 N -0.099 5.099 26 H 0.294 0.706 27 C -0.029 4.029 28 C -0.185 4.185 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.018 0.982 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.087 0.913 38 H 0.178 0.822 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.093 0.907 50 H 0.083 0.917 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.826 -21.169 -9.691 23.453 hybrid contribution 0.159 1.429 0.515 1.527 sum 2.985 -19.740 -9.176 21.973 Atomic orbital electron populations 1.20734 0.82904 0.95514 0.99234 1.43918 1.01667 1.00126 1.85737 1.19124 0.99151 0.85606 1.35083 0.91579 1.25032 0.98293 0.98555 0.97590 1.70065 1.21985 1.27587 1.34997 0.86369 0.78355 0.83977 0.78016 1.21109 1.21656 1.20917 1.20280 0.96069 0.86150 0.90398 1.22516 1.00121 0.94199 1.01689 1.21790 1.00004 0.93997 0.84928 1.48120 1.65633 1.11217 1.08567 1.17074 0.77798 0.81217 0.86500 1.90822 1.47813 1.69644 1.31764 1.21717 0.99678 1.02932 0.91081 1.21943 1.02145 0.97407 0.96899 1.21879 0.96390 0.99305 0.94244 1.18906 0.94729 0.90792 0.94059 1.21877 0.95066 1.01393 1.01308 1.21767 0.99043 1.01516 0.96876 1.21881 1.02173 0.96219 0.99424 1.73067 1.16883 1.03826 1.16439 1.44099 1.28386 1.28077 1.09318 0.70631 1.22190 1.00659 0.95070 0.84947 1.22533 1.00139 0.94066 1.01744 0.95233 0.94325 0.98187 0.93652 0.91825 0.92050 0.90305 0.89297 0.91309 0.82193 0.92392 0.91932 0.92173 0.92550 0.92480 0.91974 0.92051 0.91903 0.92400 0.90878 0.90722 0.91686 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.07 59.84 0.48 4.34 16 2 N -0.59 -14.12 2.80 -173.44 -0.49 -14.60 16 3 C -0.26 -6.87 9.55 -15.06 -0.14 -7.01 16 4 H 0.07 1.70 7.85 -52.48 -0.41 1.28 16 5 C 0.00 0.12 5.03 -17.43 -0.09 0.03 16 6 N -0.90 -25.89 10.96 55.49 0.61 -25.28 16 7 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.18 3.36 2.55 -67.89 -0.17 3.18 16 12 C -0.14 -2.53 5.34 -26.62 -0.14 -2.67 16 13 C 0.11 1.65 6.44 -3.71 -0.02 1.63 16 14 N -0.60 -8.18 2.97 -173.87 -0.52 -8.69 16 15 C 0.59 8.62 7.62 -12.64 -0.10 8.52 16 16 O -0.53 -9.29 16.46 5.25 0.09 -9.20 16 17 C -0.03 -0.33 6.26 -82.06 -0.51 -0.84 16 18 C -0.16 -1.86 10.23 -38.99 -0.40 -2.26 16 19 C 0.04 0.44 5.65 -82.47 -0.47 -0.02 16 20 C 0.02 0.14 0.96 -155.66 -0.15 -0.01 16 21 C -0.14 -1.07 8.46 37.16 0.31 -0.75 16 22 C -0.13 -1.06 8.04 37.16 0.30 -0.76 16 23 C -0.14 -1.01 8.20 37.15 0.30 -0.70 16 24 N -0.27 -3.10 11.48 33.64 0.39 -2.71 16 25 N -0.38 -4.09 5.58 33.48 0.19 -3.90 16 26 H 0.45 3.73 7.02 -190.45 -1.34 2.39 16 27 C 0.10 1.12 5.35 -3.49 -0.02 1.10 16 28 C -0.14 -2.23 5.34 -26.39 -0.14 -2.37 16 29 H 0.03 0.78 7.39 -51.93 -0.38 0.39 16 30 H 0.04 1.00 7.41 -51.93 -0.38 0.61 16 31 H 0.00 -0.01 6.46 -51.93 -0.34 -0.34 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 33 H 0.06 1.18 7.87 -51.93 -0.41 0.78 16 34 H 0.06 1.16 7.72 -51.93 -0.40 0.76 16 35 H 0.08 1.50 8.14 -51.92 -0.42 1.08 16 36 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.16 1.77 7.79 -52.48 -0.41 1.37 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 45 H 0.06 0.44 7.60 -51.93 -0.39 0.05 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.07 0.79 4.73 -51.93 -0.25 0.54 16 50 H 0.06 1.10 6.72 -51.93 -0.35 0.75 16 51 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -31.32 395.75 -9.38 -40.70 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -9.63 Total: -0.03 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.95 Total: 1.41 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.18 Total: -55.19 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.32 -9.38 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985513399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.874 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds