Wall clock time and date at job start Tue Mar 31 2020 20:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36928 * 120.00429 * 2 1 4 4 H 1.08006 * 120.00570 * 204.12275 * 3 2 1 5 5 C 1.38820 * 119.99932 * 24.12692 * 3 2 1 6 6 N 1.31616 * 119.99607 * 15.83544 * 5 3 2 7 7 Si 1.86795 * 119.99857 * 195.83490 * 5 3 2 8 8 H 1.48498 * 109.47476 * 59.99857 * 7 5 3 9 9 H 1.48500 * 109.47042 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47606 * 299.99840 * 7 5 3 11 11 C 1.46504 * 119.99548 * 179.97438 * 2 1 3 12 12 C 1.53035 * 109.46530 * 300.00448 * 11 2 1 13 13 C 1.53189 * 109.31528 * 181.37548 * 12 11 2 14 14 N 1.46930 * 108.77137 * 305.36027 * 13 12 11 15 15 C 1.34781 * 120.62948 * 233.58607 * 14 13 12 16 16 O 1.21629 * 120.00114 * 8.87219 * 15 14 13 17 17 C 1.47158 * 119.99902 * 188.87731 * 15 14 13 18 18 C 1.38409 * 126.88517 * 208.91832 * 17 15 14 19 19 C 1.39666 * 105.36028 * 180.29198 * 18 17 15 20 20 C 1.50710 * 126.06752 * 179.71741 * 19 18 17 21 21 C 1.52996 * 109.47000 * 75.00402 * 20 19 18 22 22 C 1.52998 * 109.46759 * 194.99999 * 20 19 18 23 23 C 1.52994 * 109.47022 * 315.00040 * 20 19 18 24 24 N 1.30862 * 107.86306 * 359.56628 * 19 18 17 25 25 N 1.28442 * 110.92589 * 0.45312 * 24 19 18 26 26 H 0.97003 * 125.18944 * 179.67646 * 25 24 19 27 27 C 1.46926 * 118.73972 * 53.86524 * 14 13 12 28 28 C 1.53046 * 109.44995 * 60.06809 * 11 2 1 29 29 H 1.08999 * 109.47677 * 273.86824 * 1 2 3 30 30 H 1.09001 * 109.46860 * 33.86369 * 1 2 3 31 31 H 1.08999 * 109.47510 * 153.86602 * 1 2 3 32 32 H 0.97001 * 119.99153 * 180.02562 * 6 5 3 33 33 H 1.09004 * 109.45642 * 180.02562 * 11 2 1 34 34 H 1.08996 * 109.49938 * 61.41666 * 12 11 2 35 35 H 1.09007 * 109.49193 * 301.32181 * 12 11 2 36 36 H 1.08998 * 109.58562 * 185.57828 * 13 12 11 37 37 H 1.08993 * 109.70771 * 65.21784 * 13 12 11 38 38 H 1.08004 * 127.31532 * 0.03295 * 18 17 15 39 39 H 1.08999 * 109.47664 * 60.00146 * 21 20 19 40 40 H 1.08998 * 109.47035 * 180.02562 * 21 20 19 41 41 H 1.09006 * 109.46998 * 299.99968 * 21 20 19 42 42 H 1.09000 * 109.47282 * 60.00343 * 22 20 19 43 43 H 1.09003 * 109.47196 * 179.97438 * 22 20 19 44 44 H 1.08999 * 109.47746 * 300.00075 * 22 20 19 45 45 H 1.09006 * 109.46965 * 60.00039 * 23 20 19 46 46 H 1.08998 * 109.47411 * 179.97438 * 23 20 19 47 47 H 1.09001 * 109.47548 * 300.00606 * 23 20 19 48 48 H 1.09000 * 109.58711 * 65.92253 * 27 14 13 49 49 H 1.08999 * 109.58864 * 186.35079 * 27 14 13 50 50 H 1.09002 * 109.49402 * 298.57037 * 28 11 2 51 51 H 1.08998 * 109.50011 * 58.66417 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1590 1.2267 -0.3823 5 6 1.5466 2.3355 0.4914 6 7 0.4626 2.2447 1.2323 7 14 2.2736 4.0113 0.1011 8 1 2.2879 4.2144 -1.3699 9 1 1.4490 5.0692 0.7383 10 1 3.6617 4.0828 0.6240 11 6 2.1974 -1.2688 0.0006 12 6 1.8274 -2.0706 1.2504 13 6 2.6207 -3.3810 1.2650 14 7 2.3841 -4.0911 0.0007 15 6 1.9576 -5.3697 0.0006 16 8 1.6109 -5.8952 1.0412 17 6 1.9116 -6.1298 -1.2586 18 6 1.0473 -7.1640 -1.5736 19 6 1.3992 -7.5596 -2.8660 20 6 0.7535 -8.6641 -3.6626 21 6 -0.6087 -8.1933 -4.1760 22 6 1.6481 -9.0269 -4.8495 23 6 0.5656 -9.8931 -2.7710 24 7 2.3869 -6.7989 -3.2637 25 7 2.7137 -5.9566 -2.3507 26 1 3.4223 -5.2984 -2.4251 27 6 2.6271 -3.3829 -1.2635 28 6 1.8285 -2.0707 -1.2497 29 1 -0.3634 0.0693 1.0253 30 1 -0.3633 0.8534 -0.5726 31 1 -0.3634 -0.9226 -0.4526 32 1 0.0410 3.0482 1.5754 33 1 3.2690 -1.0694 0.0009 34 1 0.7601 -2.2916 1.2383 35 1 2.0690 -1.4892 2.1403 36 1 2.2893 -3.9996 2.0990 37 1 3.6841 -3.1658 1.3697 38 1 0.2693 -7.5798 -0.9505 39 1 -0.4749 -7.3177 -4.8112 40 1 -1.0760 -8.9922 -4.7517 41 1 -1.2461 -7.9347 -3.3303 42 1 2.6186 -9.3623 -4.4838 43 1 1.1814 -9.8260 -5.4254 44 1 1.7821 -8.1513 -5.4847 45 1 -0.0718 -9.6345 -1.9254 46 1 0.0981 -10.6918 -3.3470 47 1 1.5361 -10.2285 -2.4052 48 1 3.6907 -3.1656 -1.3620 49 1 2.2999 -4.0027 -2.0983 50 1 0.7612 -2.2917 -1.2384 51 1 2.0707 -1.4894 -2.1394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985513399.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:35 Heat of formation + Delta-G solvation = 40.080175 kcal Electronic energy + Delta-G solvation = -29702.080728 eV Core-core repulsion = 25830.916757 eV Total energy + Delta-G solvation = -3871.163971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.75103 -41.09455 -39.00960 -37.84843 -36.79738 -34.08910 -32.74252 -32.13027 -31.65034 -31.09375 -28.13381 -28.04221 -28.03940 -26.76864 -24.75286 -24.44233 -23.58649 -22.95778 -21.67833 -20.63895 -19.66147 -18.88500 -18.70152 -17.62888 -16.99441 -16.95314 -16.75149 -15.97188 -15.81399 -15.74457 -15.23553 -15.12424 -14.92305 -14.87278 -14.64809 -14.60941 -14.36050 -14.05289 -13.80790 -13.29106 -13.14376 -13.05728 -12.93350 -12.85258 -12.62365 -12.47534 -12.41510 -12.34959 -12.26991 -12.11918 -11.98260 -11.87867 -11.84664 -11.68201 -11.48589 -11.31722 -11.17980 -10.61799 -10.25470 -10.10870 -9.80342 -8.77046 -7.82689 -5.31391 0.18996 1.46653 1.46942 1.49273 1.55437 1.62436 1.72650 2.13391 2.50973 3.18378 3.30268 3.45649 3.57504 3.71760 3.83679 3.98319 4.06409 4.15395 4.17647 4.25826 4.30245 4.37249 4.45074 4.46727 4.59457 4.65289 4.68747 4.77027 4.86286 4.86998 4.88793 4.91754 4.98318 5.03949 5.10367 5.11175 5.16689 5.18139 5.27375 5.29255 5.43783 5.50021 5.50134 5.50752 5.53179 5.65705 5.66778 5.95551 6.16676 6.33760 6.81052 6.97659 7.14445 7.87318 8.33367 9.20392 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021959 B = 0.002438 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.811912 B =11483.717340 C =11891.841611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.608 5.608 3 C -0.262 4.262 4 H 0.075 0.925 5 C -0.054 4.054 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.279 1.279 9 H -0.299 1.299 10 H -0.273 1.273 11 C 0.174 3.826 12 C -0.133 4.133 13 C 0.125 3.875 14 N -0.600 5.600 15 C 0.591 3.409 16 O -0.561 6.561 17 C -0.038 4.038 18 C -0.162 4.162 19 C 0.039 3.961 20 C 0.014 3.986 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.137 4.137 24 N -0.274 5.274 25 N -0.369 5.369 26 H 0.456 0.544 27 C 0.102 3.898 28 C -0.134 4.134 29 H -0.001 1.001 30 H 0.012 0.988 31 H 0.025 0.975 32 H 0.247 0.753 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.164 0.836 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.051 0.949 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.048 0.952 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -22.853 -11.464 25.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.330 5.330 3 C -0.392 4.392 4 H 0.093 0.907 5 C -0.249 4.249 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.205 1.205 9 H -0.226 1.226 10 H -0.199 1.199 11 C 0.067 3.933 12 C -0.174 4.174 13 C 0.002 3.998 14 N -0.332 5.332 15 C 0.378 3.622 16 O -0.439 6.439 17 C -0.167 4.167 18 C -0.191 4.191 19 C -0.119 4.119 20 C 0.012 3.988 21 C -0.194 4.194 22 C -0.188 4.188 23 C -0.195 4.195 24 N -0.107 5.107 25 N -0.089 5.089 26 H 0.306 0.694 27 C -0.020 4.020 28 C -0.174 4.174 29 H 0.017 0.983 30 H 0.030 0.970 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.181 0.819 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.100 0.900 47 H 0.070 0.930 48 H 0.126 0.874 49 H 0.110 0.890 50 H 0.067 0.933 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.405 -22.749 -11.709 25.962 hybrid contribution -0.318 1.842 1.105 2.171 sum 4.087 -20.907 -10.605 23.796 Atomic orbital electron populations 1.20401 0.83621 0.95502 0.97080 1.44157 1.01598 1.01469 1.85803 1.19524 0.99397 0.86662 1.33619 0.90690 1.25807 0.99059 1.01977 0.98102 1.70238 1.23658 1.27806 1.36725 0.85357 0.77730 0.79679 0.77767 1.20500 1.22603 1.19887 1.20531 0.95870 0.84635 0.92244 1.22303 0.99300 0.95536 1.00237 1.21639 1.00757 0.91973 0.85384 1.48137 1.65178 1.11047 1.08845 1.17270 0.76917 0.81355 0.86653 1.90804 1.49426 1.70460 1.33217 1.21459 1.00847 1.03425 0.90944 1.22147 1.02212 0.97260 0.97492 1.22290 0.96019 0.99588 0.94025 1.19060 0.94997 0.90470 0.94241 1.21867 0.94641 1.01710 1.01206 1.21738 0.98773 1.01736 0.96579 1.21876 1.02002 0.96178 0.99444 1.73079 1.17088 1.04011 1.16498 1.44085 1.28247 1.28072 1.08479 0.69370 1.22278 1.02089 0.93067 0.84593 1.22339 0.99731 0.95447 0.99880 0.98321 0.96965 0.95623 0.94433 0.91134 0.94173 0.92440 0.89964 0.88712 0.81887 0.93315 0.90004 0.92552 0.93199 0.90590 0.92848 0.92227 0.90020 0.93008 0.87422 0.88976 0.93336 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 8.07 127.77 1.03 9.87 16 2 N -0.61 -29.06 2.80 -702.63 -1.97 -31.03 16 3 C -0.26 -13.79 9.55 84.04 0.80 -12.98 16 4 H 0.08 3.75 7.85 -2.91 -0.02 3.72 16 5 C -0.05 -2.98 5.03 84.86 0.43 -2.55 16 6 N -0.94 -55.45 10.96 21.65 0.24 -55.21 16 7 Si 0.97 44.21 29.58 68.60 2.03 46.24 16 8 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 9 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 C 0.17 6.32 2.55 45.02 0.11 6.43 16 12 C -0.13 -4.65 5.34 30.67 0.16 -4.49 16 13 C 0.12 3.42 6.44 86.36 0.56 3.98 16 14 N -0.60 -15.10 2.97 -822.26 -2.44 -17.54 16 15 C 0.59 16.54 7.62 86.58 0.66 17.20 16 16 O -0.56 -19.64 16.46 -4.12 -0.07 -19.71 16 17 C -0.04 -0.90 6.26 40.79 0.26 -0.65 16 18 C -0.16 -3.68 10.23 22.66 0.23 -3.45 16 19 C 0.04 0.79 5.65 43.05 0.24 1.03 16 20 C 0.01 0.21 0.96 -52.93 -0.05 0.16 16 21 C -0.14 -1.83 8.46 71.98 0.61 -1.22 16 22 C -0.13 -1.77 8.04 71.98 0.58 -1.19 16 23 C -0.14 -1.71 8.20 71.98 0.59 -1.12 16 24 N -0.27 -5.72 11.48 -47.49 -0.55 -6.26 16 25 N -0.37 -7.03 5.58 -48.00 -0.27 -7.30 16 26 H 0.46 6.18 7.02 -220.00 -1.54 4.63 16 27 C 0.10 2.10 5.35 86.51 0.46 2.57 16 28 C -0.13 -3.88 5.34 30.82 0.16 -3.71 16 29 H 0.00 -0.08 7.39 -2.39 -0.02 -0.10 16 30 H 0.01 0.63 7.41 -2.39 -0.02 0.61 16 31 H 0.03 1.10 6.46 -2.39 -0.02 1.08 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.07 2.47 7.87 -2.39 -0.02 2.45 16 34 H 0.04 1.55 7.72 -2.39 -0.02 1.53 16 35 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.08 2.42 7.00 -2.39 -0.02 2.41 16 37 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.16 3.50 7.79 -2.91 -0.02 3.48 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 44 H 0.05 0.81 8.08 -2.39 -0.02 0.80 16 45 H 0.06 0.76 7.60 -2.38 -0.02 0.74 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.09 1.64 4.73 -2.39 -0.01 1.63 16 50 H 0.05 1.57 6.72 -2.39 -0.02 1.55 16 51 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -69.03 395.75 3.19 -65.84 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.62 Total: 15.11 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.84 Total: 9.86 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.98 Total: -117.35 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.07 Total: -19.71 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -69.03 3.19 -65.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985513399.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.918 kcal (2) G-P(sol) polarization free energy of solvation -69.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds