Wall clock time and date at job start Tue Mar 31 2020 19:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46817 * 2 1 4 4 C 1.50709 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.38040 * 126.29205 * 269.99989 * 4 3 2 6 6 C 1.47435 * 126.41376 * 359.95853 * 5 4 3 7 7 O 1.21603 * 120.00012 * 43.76758 * 6 5 4 8 8 N 1.34776 * 119.99861 * 223.77392 * 6 5 4 9 9 C 1.46922 * 120.63121 * 4.87186 * 8 6 5 10 10 C 1.53632 * 108.53939 * 126.37139 * 9 8 6 11 11 C 1.53038 * 109.24244 * 54.85941 * 10 9 8 12 12 N 1.46495 * 109.44887 * 178.49611 * 11 10 9 13 13 C 1.46492 * 120.00293 * 60.06101 * 12 11 10 14 14 C 1.36937 * 119.99931 * 240.06017 * 12 11 10 15 15 H 1.08005 * 120.00192 * 23.79817 * 14 12 11 16 16 C 1.38812 * 120.00127 * 203.80614 * 14 12 11 17 17 N 1.31617 * 120.00200 * 15.54608 * 16 14 12 18 18 Si 1.86804 * 120.00133 * 195.55662 * 16 14 12 19 19 H 1.48502 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47344 * 119.99119 * 18 16 14 21 21 H 1.48498 * 109.46942 * 239.99618 * 18 16 14 22 22 C 1.53037 * 109.53676 * 298.51095 * 11 10 9 23 23 C 1.46924 * 120.62941 * 185.16029 * 8 6 5 24 24 C 1.41293 * 107.17320 * 179.97438 * 5 4 3 25 25 N 1.30448 * 108.01594 * 0.22814 * 24 5 4 26 26 N 1.34258 * 126.28957 * 89.97611 * 4 3 2 27 27 C 1.46495 * 125.75892 * 0.02562 * 26 4 3 28 28 H 1.09005 * 109.46718 * 60.00131 * 1 2 3 29 29 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47058 * 300.00373 * 1 2 3 31 31 H 1.09002 * 109.47148 * 239.99835 * 2 1 3 32 32 H 1.08999 * 109.47075 * 120.00152 * 2 1 3 33 33 H 1.08993 * 109.47611 * 59.99966 * 3 2 1 34 34 H 1.08996 * 109.47368 * 299.99174 * 3 2 1 35 35 H 1.08997 * 109.59116 * 246.20644 * 9 8 6 36 36 H 1.08999 * 109.58670 * 6.63576 * 9 8 6 37 37 H 1.08996 * 109.63567 * 294.86508 * 10 9 8 38 38 H 1.09006 * 109.43025 * 174.72731 * 10 9 8 39 39 H 1.09004 * 109.45699 * 58.52621 * 11 10 9 40 40 H 1.09000 * 109.47642 * 90.54803 * 13 12 11 41 41 H 1.09001 * 109.47567 * 210.55385 * 13 12 11 42 42 H 1.09006 * 109.47250 * 330.55091 * 13 12 11 43 43 H 0.96999 * 120.00416 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.49673 * 301.41139 * 22 11 10 45 45 H 1.08998 * 109.52448 * 181.33059 * 22 11 10 46 46 H 1.09003 * 109.58616 * 353.36674 * 23 8 6 47 47 H 1.09002 * 109.59110 * 113.65429 * 23 8 6 48 48 H 1.07997 * 125.98996 * 179.97438 * 24 5 4 49 49 H 1.09000 * 109.47464 * 89.99884 * 27 26 4 50 50 H 1.08998 * 109.47574 * 210.00646 * 27 26 4 51 51 H 1.09007 * 109.47274 * 330.00412 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3636 1.4426 1.1136 6 6 3.9248 1.4437 2.5211 7 8 3.0173 0.7160 2.8756 8 7 4.5293 2.2513 3.4148 9 6 5.5533 3.2122 2.9828 10 6 5.1562 4.6085 3.4857 11 6 4.9423 4.5571 5.0002 12 7 4.5984 5.8942 5.4899 13 6 3.4016 6.5731 4.9871 14 6 5.3956 6.5096 6.4178 15 1 6.4338 6.2264 6.5105 16 6 4.8696 7.4971 7.2392 17 7 3.5654 7.6345 7.3509 18 14 6.0127 8.6314 8.1860 19 1 7.4229 8.2722 7.8903 20 1 5.7638 10.0376 7.7786 21 1 5.7600 8.4858 9.6421 22 6 3.8035 3.5872 5.3236 23 6 4.1812 2.1832 4.8406 24 6 5.6988 1.4419 0.6514 25 7 5.6743 1.4463 -0.6529 26 7 4.3421 1.4418 -1.0812 27 6 3.8912 1.4416 -2.4750 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 6.5190 2.9306 3.4025 36 1 5.6131 3.2177 1.8944 37 1 4.2339 4.9247 2.9985 38 1 5.9517 5.3170 3.2545 39 1 5.8575 4.2170 5.4848 40 1 2.5511 6.3296 5.6239 41 1 3.5647 7.6508 4.9952 42 1 3.1983 6.2441 3.9680 43 1 3.1977 8.3249 7.9246 44 1 2.8939 3.9129 4.8191 45 1 3.6356 3.5685 6.4004 46 1 3.3355 1.5095 4.9785 47 1 5.0365 1.8170 5.4085 48 1 6.5844 1.4422 1.2695 49 1 3.7797 2.4692 -2.8211 50 1 4.6258 0.9272 -3.0945 51 1 2.9323 0.9281 -2.5466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985516117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:43 Heat of formation + Delta-G solvation = 56.867014 kcal Electronic energy + Delta-G solvation = -30065.147291 eV Core-core repulsion = 26194.711253 eV Total energy + Delta-G solvation = -3870.436039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.69941 -39.49518 -37.31348 -35.54127 -34.89319 -33.55790 -32.09058 -31.06555 -30.47764 -29.67461 -27.43425 -26.73476 -25.96316 -24.87684 -22.93009 -22.66357 -21.99905 -21.45902 -20.54883 -19.37041 -18.39982 -17.29098 -16.71819 -16.24419 -15.87069 -15.73316 -15.07826 -14.96173 -14.77604 -14.54870 -13.89926 -13.82437 -13.75239 -13.49817 -13.36720 -13.23200 -12.92878 -12.87685 -12.80667 -12.42147 -12.25508 -12.12200 -11.71498 -11.59415 -11.49072 -11.39093 -11.06379 -10.92764 -10.85371 -10.82420 -10.75128 -10.37022 -10.17408 -10.07174 -9.82757 -9.66813 -9.58820 -9.45917 -8.68709 -8.52142 -8.29168 -6.70377 -5.71443 -3.15859 1.46146 2.14572 2.17388 3.09901 3.38600 3.43713 3.46415 3.48115 4.21658 4.24594 4.50707 4.61019 4.74598 4.78783 4.82601 4.96099 5.03347 5.10365 5.19582 5.21279 5.33066 5.37397 5.41248 5.48180 5.51726 5.55333 5.57867 5.66764 5.73419 5.83560 5.86678 5.97587 6.02465 6.11814 6.14584 6.23523 6.27282 6.33526 6.47325 6.61199 6.65396 6.72445 6.85044 7.04668 7.08598 7.38576 7.40626 7.68232 7.72417 7.82983 8.42798 8.43580 9.25914 9.90355 10.40844 11.34313 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002759 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.691124 B =10147.255562 C =10628.803971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.059 4.059 4 C 0.147 3.853 5 C -0.282 4.282 6 C 0.594 3.406 7 O -0.548 6.548 8 N -0.600 5.600 9 C 0.108 3.892 10 C -0.145 4.145 11 C 0.179 3.821 12 N -0.595 5.595 13 C 0.164 3.836 14 C -0.254 4.254 15 H 0.067 0.933 16 C 0.002 3.998 17 N -0.904 5.904 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.291 1.291 22 C -0.143 4.143 23 C 0.115 3.885 24 C 0.083 3.917 25 N -0.299 5.299 26 N -0.364 5.364 27 C 0.097 3.903 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.043 0.957 42 H -0.003 1.003 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.190 0.810 49 H 0.078 0.922 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.313 -14.251 -18.927 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.098 4.098 4 C 0.015 3.985 5 C -0.297 4.297 6 C 0.382 3.618 7 O -0.427 6.427 8 N -0.332 5.332 9 C -0.016 4.016 10 C -0.185 4.185 11 C 0.071 3.929 12 N -0.316 5.316 13 C 0.019 3.981 14 C -0.384 4.384 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.549 5.549 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.218 1.218 22 C -0.183 4.183 23 C -0.007 4.007 24 C -0.104 4.104 25 N -0.119 5.119 26 N -0.144 5.144 27 C -0.044 4.044 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.061 0.939 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.207 0.793 49 H 0.097 0.903 50 H 0.111 0.889 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.204 -14.466 -19.856 24.596 hybrid contribution 0.183 0.895 1.275 1.569 sum -1.021 -13.571 -18.580 23.031 Atomic orbital electron populations 1.21743 0.95087 1.01904 1.01967 1.21463 0.96150 0.94798 1.02978 1.20402 0.85991 0.99243 1.04166 1.21387 0.94363 0.96465 0.86258 1.19982 0.93043 1.23019 0.93646 1.17266 0.81306 0.79466 0.83723 1.90725 1.29978 1.42081 1.79927 1.47982 1.40222 1.37017 1.07994 1.22015 0.90462 0.89140 0.99980 1.22524 1.01833 0.94583 0.99599 1.20297 0.95578 0.85992 0.91054 1.43951 1.28149 1.12476 1.47041 1.20688 0.89099 0.96346 0.91972 1.19244 0.91480 1.16529 1.11154 0.91474 1.25010 0.95511 1.01292 0.97847 1.70089 1.09705 1.34403 1.40689 0.86241 0.80291 0.80901 0.79441 1.20327 1.21705 1.21817 1.22475 1.00689 0.93534 1.01640 1.21686 1.00963 0.98867 0.79191 1.24022 0.97131 0.97478 0.91758 1.77167 0.96016 1.25478 1.13195 1.48242 1.03985 1.55976 1.06167 1.21935 1.01210 1.03766 0.77528 0.92980 0.92478 0.92108 0.92665 0.89907 0.88537 0.90629 0.91524 0.90035 0.92102 0.90988 0.91937 0.95909 0.93849 0.98409 0.93864 0.92319 0.90694 0.89616 0.91803 0.79324 0.90343 0.88920 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.07 5.92 -26.73 -0.16 -1.22 16 3 C -0.06 -0.58 4.76 -27.88 -0.13 -0.71 16 4 C 0.15 1.71 6.26 -81.60 -0.51 1.20 16 5 C -0.28 -3.75 5.09 -105.06 -0.53 -4.29 16 6 C 0.59 9.11 7.25 -12.52 -0.09 9.02 16 7 O -0.55 -9.69 15.57 5.28 0.08 -9.61 16 8 N -0.60 -8.86 2.97 -173.76 -0.52 -9.37 16 9 C 0.11 1.44 5.64 -3.48 -0.02 1.42 16 10 C -0.15 -2.41 5.33 -26.38 -0.14 -2.55 16 11 C 0.18 3.52 2.55 -67.89 -0.17 3.35 16 12 N -0.59 -14.57 2.80 -173.44 -0.49 -15.06 16 13 C 0.16 4.02 8.08 59.84 0.48 4.50 16 14 C -0.25 -6.88 9.55 -15.06 -0.14 -7.02 16 15 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 16 C 0.00 0.05 5.00 -17.43 -0.09 -0.03 16 17 N -0.90 -26.34 10.94 55.49 0.61 -25.73 16 18 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 C -0.14 -2.63 5.34 -26.61 -0.14 -2.77 16 23 C 0.12 1.79 6.44 -3.71 -0.02 1.77 16 24 C 0.08 0.99 9.69 -16.98 -0.16 0.83 16 25 N -0.30 -3.68 12.50 30.86 0.39 -3.30 16 26 N -0.36 -3.86 3.98 -63.34 -0.25 -4.11 16 27 C 0.10 0.58 11.06 59.84 0.66 1.25 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.99 7.60 -51.93 -0.39 0.59 16 33 H 0.10 1.12 7.87 -51.93 -0.41 0.71 16 34 H 0.08 0.55 7.70 -51.93 -0.40 0.15 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.01 4.92 -51.93 -0.26 0.75 16 37 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.24 7.87 -51.93 -0.41 0.83 16 40 H 0.02 0.61 7.58 -51.93 -0.39 0.21 16 41 H 0.04 1.15 7.16 -51.93 -0.37 0.78 16 42 H 0.00 -0.06 6.46 -51.93 -0.34 -0.39 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 45 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 46 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 47 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.19 1.80 7.60 -52.49 -0.40 1.40 16 49 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.36 7.62 -51.92 -0.40 -0.04 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -32.99 398.92 -8.65 -41.64 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.65 Total: -1.09 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.81 Total: 3.93 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.26 Total: -57.57 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.99 -8.65 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985516117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.509 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds