Wall clock time and date at job start Tue Mar 31 2020 19:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46817 * 2 1 4 4 C 1.50709 * 109.46745 * 179.97438 * 3 2 1 5 5 C 1.38040 * 126.29205 * 269.99989 * 4 3 2 6 6 C 1.47435 * 126.41376 * 359.95853 * 5 4 3 7 7 O 1.21603 * 120.00012 * 43.76758 * 6 5 4 8 8 N 1.34776 * 119.99861 * 223.77392 * 6 5 4 9 9 C 1.46922 * 120.63121 * 4.87186 * 8 6 5 10 10 C 1.53632 * 108.53939 * 126.37139 * 9 8 6 11 11 C 1.53038 * 109.24244 * 54.85941 * 10 9 8 12 12 N 1.46495 * 109.44887 * 178.49611 * 11 10 9 13 13 C 1.46492 * 120.00293 * 60.06101 * 12 11 10 14 14 C 1.36937 * 119.99931 * 240.06017 * 12 11 10 15 15 H 1.08005 * 120.00192 * 23.79817 * 14 12 11 16 16 C 1.38812 * 120.00127 * 203.80614 * 14 12 11 17 17 N 1.31617 * 120.00200 * 15.54608 * 16 14 12 18 18 Si 1.86804 * 120.00133 * 195.55662 * 16 14 12 19 19 H 1.48502 * 109.47008 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47344 * 119.99119 * 18 16 14 21 21 H 1.48498 * 109.46942 * 239.99618 * 18 16 14 22 22 C 1.53037 * 109.53676 * 298.51095 * 11 10 9 23 23 C 1.46924 * 120.62941 * 185.16029 * 8 6 5 24 24 C 1.41293 * 107.17320 * 179.97438 * 5 4 3 25 25 N 1.30448 * 108.01594 * 0.22814 * 24 5 4 26 26 N 1.34258 * 126.28957 * 89.97611 * 4 3 2 27 27 C 1.46495 * 125.75892 * 0.02562 * 26 4 3 28 28 H 1.09005 * 109.46718 * 60.00131 * 1 2 3 29 29 H 1.08997 * 109.47238 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47058 * 300.00373 * 1 2 3 31 31 H 1.09002 * 109.47148 * 239.99835 * 2 1 3 32 32 H 1.08999 * 109.47075 * 120.00152 * 2 1 3 33 33 H 1.08993 * 109.47611 * 59.99966 * 3 2 1 34 34 H 1.08996 * 109.47368 * 299.99174 * 3 2 1 35 35 H 1.08997 * 109.59116 * 246.20644 * 9 8 6 36 36 H 1.08999 * 109.58670 * 6.63576 * 9 8 6 37 37 H 1.08996 * 109.63567 * 294.86508 * 10 9 8 38 38 H 1.09006 * 109.43025 * 174.72731 * 10 9 8 39 39 H 1.09004 * 109.45699 * 58.52621 * 11 10 9 40 40 H 1.09000 * 109.47642 * 90.54803 * 13 12 11 41 41 H 1.09001 * 109.47567 * 210.55385 * 13 12 11 42 42 H 1.09006 * 109.47250 * 330.55091 * 13 12 11 43 43 H 0.96999 * 120.00416 * 180.02562 * 17 16 14 44 44 H 1.08996 * 109.49673 * 301.41139 * 22 11 10 45 45 H 1.08998 * 109.52448 * 181.33059 * 22 11 10 46 46 H 1.09003 * 109.58616 * 353.36674 * 23 8 6 47 47 H 1.09002 * 109.59110 * 113.65429 * 23 8 6 48 48 H 1.07997 * 125.98996 * 179.97438 * 24 5 4 49 49 H 1.09000 * 109.47464 * 89.99884 * 27 26 4 50 50 H 1.08998 * 109.47574 * 210.00646 * 27 26 4 51 51 H 1.09007 * 109.47274 * 330.00412 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 0.0006 5 6 4.3636 1.4426 1.1136 6 6 3.9248 1.4437 2.5211 7 8 3.0173 0.7160 2.8756 8 7 4.5293 2.2513 3.4148 9 6 5.5533 3.2122 2.9828 10 6 5.1562 4.6085 3.4857 11 6 4.9423 4.5571 5.0002 12 7 4.5984 5.8942 5.4899 13 6 3.4016 6.5731 4.9871 14 6 5.3956 6.5096 6.4178 15 1 6.4338 6.2264 6.5105 16 6 4.8696 7.4971 7.2392 17 7 3.5654 7.6345 7.3509 18 14 6.0127 8.6314 8.1860 19 1 7.4229 8.2722 7.8903 20 1 5.7638 10.0376 7.7786 21 1 5.7600 8.4858 9.6421 22 6 3.8035 3.5872 5.3236 23 6 4.1812 2.1832 4.8406 24 6 5.6988 1.4419 0.6514 25 7 5.6743 1.4463 -0.6529 26 7 4.3421 1.4418 -1.0812 27 6 3.8912 1.4416 -2.4750 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 6.5190 2.9306 3.4025 36 1 5.6131 3.2177 1.8944 37 1 4.2339 4.9247 2.9985 38 1 5.9517 5.3170 3.2545 39 1 5.8575 4.2170 5.4848 40 1 2.5511 6.3296 5.6239 41 1 3.5647 7.6508 4.9952 42 1 3.1983 6.2441 3.9680 43 1 3.1977 8.3249 7.9246 44 1 2.8939 3.9129 4.8191 45 1 3.6356 3.5685 6.4004 46 1 3.3355 1.5095 4.9785 47 1 5.0365 1.8170 5.4085 48 1 6.5844 1.4422 1.2695 49 1 3.7797 2.4692 -2.8211 50 1 4.6258 0.9272 -3.0945 51 1 2.9323 0.9281 -2.5466 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985516117.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:41 Heat of formation + Delta-G solvation = 37.500603 kcal Electronic energy + Delta-G solvation = -30065.987082 eV Core-core repulsion = 26194.711253 eV Total energy + Delta-G solvation = -3871.275829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.58486 -40.72550 -38.78506 -36.71437 -36.14250 -34.39782 -33.76514 -32.25203 -31.55861 -31.29557 -28.29006 -28.00984 -27.43176 -26.34404 -24.24875 -24.10440 -22.86724 -22.58770 -21.58059 -20.63911 -19.58476 -18.72772 -18.34912 -17.31108 -16.87346 -16.84060 -16.61234 -15.93969 -15.82173 -15.70729 -15.39413 -15.12159 -15.01464 -14.70208 -14.54492 -14.41274 -14.08307 -13.96867 -13.66560 -13.48957 -13.42045 -13.14703 -13.07145 -13.02817 -12.81258 -12.62824 -12.44171 -12.33914 -12.19860 -12.16575 -12.01271 -11.91293 -11.81060 -11.62224 -11.56795 -11.20304 -10.83291 -10.59432 -10.33336 -9.70756 -9.44986 -8.73291 -7.81210 -5.27902 0.57500 1.21359 1.43348 1.47326 1.49107 1.59268 1.96878 2.31705 2.53138 3.32738 3.45229 3.47034 3.63652 3.84573 3.90081 3.97232 4.08327 4.14979 4.21174 4.22676 4.37642 4.40880 4.42009 4.42753 4.50579 4.59449 4.61035 4.66468 4.74239 4.75919 4.83966 4.87612 4.88771 4.91116 4.94278 5.03894 5.13450 5.16726 5.22826 5.32460 5.37587 5.42409 5.45220 5.52704 5.63186 5.69428 5.71880 5.90347 6.36586 6.49577 6.56150 7.17458 7.25346 7.90644 8.36655 9.23297 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.002759 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.691124 B =10147.255562 C =10628.803971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C -0.057 4.057 4 C 0.148 3.852 5 C -0.311 4.311 6 C 0.595 3.405 7 O -0.579 6.579 8 N -0.601 5.601 9 C 0.117 3.883 10 C -0.133 4.133 11 C 0.174 3.826 12 N -0.610 5.610 13 C 0.183 3.817 14 C -0.259 4.259 15 H 0.074 0.926 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.966 3.034 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.295 1.295 22 C -0.130 4.130 23 C 0.126 3.874 24 C 0.084 3.916 25 N -0.317 5.317 26 N -0.359 5.359 27 C 0.084 3.916 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.066 0.934 40 H -0.007 1.007 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.246 0.754 44 H 0.039 0.961 45 H 0.053 0.947 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.210 0.790 49 H 0.093 0.907 50 H 0.102 0.898 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -15.127 -21.326 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.147 4.147 3 C -0.096 4.096 4 C 0.015 3.985 5 C -0.325 4.325 6 C 0.384 3.616 7 O -0.460 6.460 8 N -0.333 5.333 9 C -0.006 4.006 10 C -0.173 4.173 11 C 0.067 3.933 12 N -0.332 5.332 13 C 0.038 3.962 14 C -0.389 4.389 15 H 0.092 0.908 16 C -0.250 4.250 17 N -0.586 5.586 18 Si 0.794 3.206 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.222 1.222 22 C -0.171 4.171 23 C 0.003 3.997 24 C -0.102 4.102 25 N -0.136 5.136 26 N -0.138 5.138 27 C -0.056 4.056 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.011 0.989 41 H 0.035 0.965 42 H 0.042 0.958 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.226 0.774 49 H 0.111 0.889 50 H 0.121 0.879 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.261 -15.368 -22.303 27.086 hybrid contribution -0.298 1.106 1.931 2.245 sum -0.038 -14.262 -20.372 24.868 Atomic orbital electron populations 1.21726 0.94054 1.02413 1.02239 1.21382 0.96981 0.94206 1.02179 1.20438 0.84987 0.99639 1.04499 1.21629 0.95104 0.95417 0.86371 1.19937 0.94247 1.25566 0.92795 1.17578 0.80599 0.78847 0.84535 1.90708 1.31362 1.43353 1.80559 1.48016 1.40501 1.37278 1.07493 1.22049 0.90856 0.86613 1.01042 1.22341 1.01324 0.96915 0.96724 1.20527 0.95783 0.83882 0.93062 1.44196 1.27691 1.14429 1.46844 1.20358 0.88388 0.94785 0.92696 1.19616 0.92085 1.16362 1.10826 0.90807 1.25782 0.96794 1.03033 0.99382 1.70251 1.11412 1.35049 1.41884 0.85222 0.79169 0.78540 0.77624 1.18739 1.22110 1.22234 1.22261 0.99445 0.95256 1.00094 1.21500 1.01575 0.96450 0.80163 1.24308 0.97187 0.96874 0.91846 1.77129 0.97161 1.26021 1.13330 1.48589 1.03266 1.54528 1.07391 1.22364 1.02608 1.05304 0.75277 0.90859 0.91897 0.93654 0.90875 0.93211 0.90882 0.87540 0.88930 0.88377 0.93508 0.90718 0.91605 0.98862 0.96488 0.95821 0.94466 0.94236 0.92864 0.90335 0.89753 0.77394 0.88857 0.87908 0.86971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.11 -1.88 5.92 30.59 0.18 -1.70 16 3 C -0.06 -1.02 4.76 29.85 0.14 -0.88 16 4 C 0.15 3.20 6.26 42.14 0.26 3.46 16 5 C -0.31 -7.84 5.09 -20.15 -0.10 -7.94 16 6 C 0.59 17.88 7.25 86.67 0.63 18.51 16 7 O -0.58 -20.74 15.57 -4.04 -0.06 -20.80 16 8 N -0.60 -17.03 2.97 -821.92 -2.44 -19.47 16 9 C 0.12 2.85 5.64 86.51 0.49 3.34 16 10 C -0.13 -4.22 5.33 30.82 0.16 -4.05 16 11 C 0.17 6.76 2.55 45.02 0.11 6.87 16 12 N -0.61 -30.15 2.80 -702.65 -1.97 -32.12 16 13 C 0.18 9.24 8.08 127.77 1.03 10.27 16 14 C -0.26 -14.01 9.55 84.03 0.80 -13.21 16 15 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 16 C -0.05 -3.08 5.00 84.86 0.42 -2.66 16 17 N -0.94 -56.30 10.94 21.65 0.24 -56.06 16 18 Si 0.97 45.04 29.58 68.60 2.03 47.06 16 19 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 C -0.13 -4.85 5.34 30.67 0.16 -4.69 16 23 C 0.13 3.84 6.44 86.36 0.56 4.40 16 24 C 0.08 1.83 9.69 85.65 0.83 2.66 16 25 N -0.32 -7.05 12.50 -56.27 -0.70 -7.75 16 26 N -0.36 -6.67 3.98 -354.31 -1.41 -8.08 16 27 C 0.08 0.73 11.06 127.77 1.41 2.14 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 1.20 7.60 -2.39 -0.02 1.18 16 33 H 0.07 1.69 7.87 -2.39 -0.02 1.67 16 34 H 0.11 1.23 7.70 -2.39 -0.02 1.21 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 2.15 4.92 -2.39 -0.01 2.14 16 37 H 0.05 1.61 6.72 -2.39 -0.02 1.60 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.07 2.51 7.87 -2.38 -0.02 2.49 16 40 H -0.01 -0.39 7.58 -2.39 -0.02 -0.40 16 41 H 0.02 0.91 7.16 -2.39 -0.02 0.89 16 42 H 0.02 1.04 6.46 -2.38 -0.02 1.03 16 43 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 45 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.08 2.54 7.00 -2.39 -0.02 2.53 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.21 3.37 7.60 -2.91 -0.02 3.35 16 49 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.11 0.45 7.62 -2.38 -0.02 0.44 16 Total: -1.00 -73.32 398.92 4.40 -68.91 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.90 Total: 13.17 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.82 Total: 15.14 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -6.28 Total: -123.49 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.06 Total: -20.80 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.32 4.40 -68.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985516117.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.415 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds