Wall clock time and date at job start Tue Mar 31 2020 20:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99974 * 2 1 4 4 H 1.08001 * 119.99863 * 200.17876 * 3 2 1 5 5 C 1.38811 * 120.00122 * 20.17523 * 3 2 1 6 6 N 1.31611 * 120.00096 * 16.34801 * 5 3 2 7 7 Si 1.86805 * 119.99711 * 196.34730 * 5 3 2 8 8 H 1.48498 * 109.46955 * 94.98870 * 7 5 3 9 9 H 1.48504 * 109.46768 * 214.98224 * 7 5 3 10 10 H 1.48494 * 109.47448 * 334.98187 * 7 5 3 11 11 C 1.46501 * 119.99977 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45747 * 299.99731 * 11 2 1 13 13 C 1.53197 * 109.31235 * 181.38521 * 12 11 2 14 14 N 1.46919 * 108.77599 * 305.36367 * 13 12 11 15 15 C 1.34777 * 120.63293 * 233.58121 * 14 13 12 16 16 O 1.21281 * 119.99838 * 5.79468 * 15 14 13 17 17 C 1.50696 * 120.00141 * 185.78517 * 15 14 13 18 18 C 1.52998 * 109.47160 * 175.97056 * 17 15 14 19 19 C 1.53002 * 109.47200 * 55.97092 * 17 15 14 20 20 C 1.50704 * 109.47411 * 295.97311 * 17 15 14 21 21 C 1.39873 * 126.03502 * 352.01943 * 20 17 15 22 22 N 1.30842 * 108.20029 * 180.26658 * 21 20 17 23 23 N 1.40083 * 108.20476 * 0.02562 * 22 21 20 24 24 C 1.46500 * 126.03532 * 179.97438 * 23 22 21 25 25 C 1.34947 * 107.92901 * 359.97438 * 23 22 21 26 26 C 1.46932 * 118.73671 * 53.85941 * 14 13 12 27 27 C 1.53042 * 109.46272 * 60.06575 * 11 2 1 28 28 H 1.09006 * 109.46996 * 273.66100 * 1 2 3 29 29 H 1.08992 * 109.47173 * 33.65724 * 1 2 3 30 30 H 1.09000 * 109.47387 * 153.65873 * 1 2 3 31 31 H 0.97000 * 119.99920 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.44909 * 180.02562 * 11 2 1 33 33 H 1.08997 * 109.50387 * 61.43544 * 12 11 2 34 34 H 1.08999 * 109.52545 * 301.35293 * 12 11 2 35 35 H 1.09000 * 109.58670 * 185.57449 * 13 12 11 36 36 H 1.09000 * 109.70477 * 65.22347 * 13 12 11 37 37 H 1.09001 * 109.47021 * 184.29766 * 18 17 15 38 38 H 1.08998 * 109.46997 * 304.29489 * 18 17 15 39 39 H 1.09000 * 109.47360 * 64.29498 * 18 17 15 40 40 H 1.09003 * 109.46755 * 305.44688 * 19 17 15 41 41 H 1.08992 * 109.47029 * 65.44647 * 19 17 15 42 42 H 1.09005 * 109.47439 * 185.45347 * 19 17 15 43 43 H 1.07992 * 125.90130 * 0.27570 * 21 20 17 44 44 H 1.09004 * 109.46853 * 270.01794 * 24 23 22 45 45 H 1.08994 * 109.47349 * 30.02219 * 24 23 22 46 46 H 1.09000 * 109.47281 * 150.02732 * 24 23 22 47 47 H 1.08001 * 126.12942 * 180.02562 * 25 23 22 48 48 H 1.09005 * 109.58611 * 65.92837 * 26 14 13 49 49 H 1.09005 * 109.58391 * 186.34664 * 26 14 13 50 50 H 1.09000 * 109.49253 * 298.56739 * 27 11 2 51 51 H 1.09000 * 109.49774 * 58.63026 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1800 1.2146 -0.3226 5 6 1.5195 2.3511 0.4146 6 7 0.3985 2.2846 1.1009 7 14 2.2627 4.0137 -0.0016 8 1 1.6386 4.5381 -1.2428 9 1 2.0146 4.9603 1.1154 10 1 3.7256 3.8643 -0.2080 11 6 2.1975 -1.2687 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6212 -3.3818 1.2624 14 7 2.3849 -4.0910 -0.0024 15 6 1.9587 -5.3697 -0.0035 16 8 1.6662 -5.9122 1.0410 17 6 1.8456 -6.1251 -1.3025 18 6 1.4401 -7.5725 -1.0171 19 6 3.1955 -6.1062 -2.0227 20 6 0.8025 -5.4735 -2.1734 21 6 -0.0623 -4.4430 -1.7905 22 7 -0.8237 -4.1475 -2.8127 23 7 -0.4672 -4.9821 -3.8798 24 6 -1.0731 -4.9821 -5.2136 25 6 0.5328 -5.7862 -3.4621 26 6 2.6278 -3.3818 -1.2660 27 6 1.8289 -2.0698 -1.2514 28 1 -0.3633 0.0656 1.0256 29 1 -0.3633 0.8553 -0.5695 30 1 -0.3634 -0.9209 -0.4560 31 1 -0.0421 3.0990 1.3903 32 1 3.2691 -1.0692 0.0000 33 1 0.7604 -2.2928 1.2364 34 1 2.0685 -1.4910 2.1393 35 1 2.2899 -4.0010 2.0960 36 1 3.6845 -3.1664 1.3674 37 1 1.4325 -8.1381 -1.9489 38 1 2.1541 -8.0203 -0.3260 39 1 0.4447 -7.5902 -0.5732 40 1 3.5303 -5.0755 -2.1398 41 1 3.9276 -6.6618 -1.4368 42 1 3.0900 -6.5677 -3.0046 43 1 -0.0958 -3.9726 -0.8190 44 1 -1.9130 -5.6767 -5.2311 45 1 -1.4261 -3.9790 -5.4523 46 1 -0.3309 -5.2910 -5.9498 47 1 1.0292 -6.5435 -4.0508 48 1 3.6914 -3.1641 -1.3643 49 1 2.3008 -4.0012 -2.1013 50 1 0.7616 -2.2910 -1.2402 51 1 2.0705 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985733594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:47 Heat of formation + Delta-G solvation = 83.163595 kcal Electronic energy + Delta-G solvation = -31320.544490 eV Core-core repulsion = 27451.248757 eV Total energy + Delta-G solvation = -3869.295733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.80030 -39.97779 -37.56780 -35.60408 -34.94965 -33.05714 -32.05406 -30.69415 -29.65156 -29.46160 -27.33810 -26.89416 -25.94862 -25.22783 -23.41762 -22.65645 -21.88911 -21.16756 -20.33765 -19.23631 -18.49716 -17.35415 -16.71464 -16.27139 -15.67936 -15.47577 -15.11763 -14.96888 -14.47787 -14.10907 -13.97074 -13.84379 -13.62671 -13.41817 -13.18180 -13.06660 -12.87755 -12.65899 -12.55364 -12.34617 -12.22465 -12.05935 -11.84225 -11.75220 -11.57188 -11.37678 -11.12607 -10.87403 -10.76329 -10.71669 -10.50562 -10.32649 -10.16756 -10.03782 -9.78149 -9.60665 -9.45525 -9.36055 -8.50557 -8.41654 -8.33246 -6.71833 -5.67574 -3.09757 1.77665 2.38612 2.69873 2.82304 3.21633 3.40802 3.47320 3.48824 4.31195 4.44378 4.53130 4.68093 4.80521 4.91264 4.95415 5.00569 5.14712 5.21241 5.25458 5.33926 5.42298 5.46120 5.51212 5.54689 5.56263 5.66747 5.68536 5.71096 5.84424 5.86240 5.97580 5.99627 6.03093 6.14089 6.21763 6.25976 6.34136 6.48448 6.54316 6.61198 6.73205 6.86372 6.88294 7.06362 7.08835 7.46441 7.62854 7.65187 7.77804 7.86169 8.36828 8.44137 9.28800 9.93924 10.42687 11.37674 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003734 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.432589 B = 7496.413564 C = 8613.739044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.595 5.595 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.905 5.905 7 Si 0.901 3.099 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.181 3.819 12 C -0.144 4.144 13 C 0.112 3.888 14 N -0.601 5.601 15 C 0.527 3.473 16 O -0.546 6.546 17 C 0.001 3.999 18 C -0.120 4.120 19 C -0.153 4.153 20 C -0.228 4.228 21 C 0.066 3.934 22 N -0.285 5.285 23 N -0.377 5.377 24 C 0.103 3.897 25 C 0.062 3.938 26 C 0.097 3.903 27 C -0.149 4.149 28 H 0.025 0.975 29 H 0.041 0.959 30 H -0.001 1.001 31 H 0.251 0.749 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.181 0.819 44 H 0.073 0.927 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.172 0.828 48 H 0.063 0.937 49 H 0.097 0.903 50 H 0.068 0.932 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -20.016 -12.132 23.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.317 5.317 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.550 5.550 7 Si 0.731 3.269 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.205 1.205 11 C 0.072 3.928 12 C -0.184 4.184 13 C -0.011 4.011 14 N -0.334 5.334 15 C 0.314 3.686 16 O -0.423 6.423 17 C -0.004 4.004 18 C -0.178 4.178 19 C -0.210 4.210 20 C -0.240 4.240 21 C -0.121 4.121 22 N -0.105 5.105 23 N -0.159 5.159 24 C -0.039 4.039 25 C -0.084 4.084 26 C -0.026 4.026 27 C -0.189 4.189 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.197 0.803 44 H 0.091 0.909 45 H 0.109 0.891 46 H 0.104 0.896 47 H 0.190 0.810 48 H 0.081 0.919 49 H 0.115 0.885 50 H 0.087 0.913 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.438 -19.369 -12.109 22.888 hybrid contribution 0.909 0.650 0.067 1.120 sum 2.347 -18.718 -12.041 22.381 Atomic orbital electron populations 1.20703 0.82722 0.95593 0.98919 1.43969 1.01778 1.00193 1.85718 1.19239 0.96788 0.85010 1.37216 0.91419 1.24919 0.98028 0.98172 0.98609 1.70104 1.19616 1.26603 1.38712 0.86290 0.78561 0.84478 0.77549 1.21692 1.21899 1.20531 1.20270 0.95817 0.85997 0.90716 1.22491 0.99936 0.94509 1.01474 1.21701 0.99674 0.93842 0.85843 1.48112 1.65749 1.11627 1.07867 1.20344 0.76265 0.81536 0.90441 1.90661 1.49632 1.68302 1.33741 1.19017 0.94217 0.95506 0.91644 1.21647 1.02526 0.92515 1.01105 1.22228 0.94775 1.03796 1.00191 1.19597 1.05119 1.04356 0.94964 1.23925 0.93513 0.96048 0.98569 1.77522 1.23237 1.14993 0.94749 1.48482 1.28126 1.28023 1.11280 1.21835 0.98809 1.04629 0.78591 1.22092 0.93109 0.97418 0.95758 1.22313 0.99768 0.94462 0.86018 1.22632 1.00619 0.94639 1.00974 0.95684 0.94027 0.98278 0.93874 0.92132 0.92316 0.90727 0.89681 0.91849 0.92417 0.91888 0.91959 0.90610 0.91931 0.91728 0.80253 0.90893 0.89136 0.89610 0.81047 0.91860 0.88547 0.91324 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.15 8.05 59.85 0.48 4.63 16 2 N -0.60 -14.73 2.81 -173.44 -0.49 -15.22 16 3 C -0.25 -6.91 9.61 -15.06 -0.14 -7.06 16 4 H 0.07 1.81 7.82 -52.49 -0.41 1.40 16 5 C 0.00 0.03 5.02 -17.43 -0.09 -0.06 16 6 N -0.91 -26.67 10.75 55.49 0.60 -26.07 16 7 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 8 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 C 0.18 3.57 2.55 -67.89 -0.17 3.40 16 12 C -0.14 -2.64 5.34 -26.61 -0.14 -2.78 16 13 C 0.11 1.73 6.44 -3.71 -0.02 1.71 16 14 N -0.60 -8.61 2.59 -172.50 -0.45 -9.06 16 15 C 0.53 7.70 5.51 -10.99 -0.06 7.64 16 16 O -0.55 -9.73 15.40 5.56 0.09 -9.64 16 17 C 0.00 0.01 0.67 -156.81 -0.11 -0.10 16 18 C -0.12 -1.25 7.72 37.16 0.29 -0.96 16 19 C -0.15 -1.33 8.02 37.16 0.30 -1.03 16 20 C -0.23 -2.64 2.94 -105.05 -0.31 -2.94 16 21 C 0.07 0.95 7.93 -17.36 -0.14 0.81 16 22 N -0.28 -4.16 12.58 30.62 0.39 -3.77 16 23 N -0.38 -4.03 4.01 -68.16 -0.27 -4.30 16 24 C 0.10 0.65 11.47 59.85 0.69 1.34 16 25 C 0.06 0.58 10.75 -17.22 -0.19 0.40 16 26 C 0.10 1.30 3.63 -3.49 -0.01 1.28 16 27 C -0.15 -2.49 5.05 -26.39 -0.13 -2.63 16 28 H 0.02 0.68 7.49 -51.93 -0.39 0.29 16 29 H 0.04 1.13 7.14 -51.93 -0.37 0.76 16 30 H 0.00 -0.03 6.46 -51.93 -0.34 -0.36 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 33 H 0.06 1.15 7.72 -51.93 -0.40 0.75 16 34 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.08 1.37 7.00 -51.93 -0.36 1.01 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.67 8.04 -51.93 -0.42 0.26 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.69 4.69 -51.93 -0.24 0.45 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.42 7.54 -51.93 -0.39 0.03 16 43 H 0.18 2.90 6.29 -52.49 -0.33 2.57 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.17 0.95 7.84 -52.49 -0.41 0.54 16 48 H 0.06 0.78 7.97 -51.93 -0.41 0.36 16 49 H 0.10 1.17 3.23 -51.93 -0.17 1.01 16 50 H 0.07 1.23 4.16 -51.93 -0.22 1.02 16 51 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -33.55 382.54 -7.37 -40.93 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -8.21 Total: 0.79 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 0.24 Total: 3.64 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: -0.23 Total: -58.42 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.55 -7.37 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985733594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.089 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds