Wall clock time and date at job start Tue Mar 31 2020 20:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36933 * 119.99974 * 2 1 4 4 H 1.08001 * 119.99863 * 200.17876 * 3 2 1 5 5 C 1.38811 * 120.00122 * 20.17523 * 3 2 1 6 6 N 1.31611 * 120.00096 * 16.34801 * 5 3 2 7 7 Si 1.86805 * 119.99711 * 196.34730 * 5 3 2 8 8 H 1.48498 * 109.46955 * 94.98870 * 7 5 3 9 9 H 1.48504 * 109.46768 * 214.98224 * 7 5 3 10 10 H 1.48494 * 109.47448 * 334.98187 * 7 5 3 11 11 C 1.46501 * 119.99977 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45747 * 299.99731 * 11 2 1 13 13 C 1.53197 * 109.31235 * 181.38521 * 12 11 2 14 14 N 1.46919 * 108.77599 * 305.36367 * 13 12 11 15 15 C 1.34777 * 120.63293 * 233.58121 * 14 13 12 16 16 O 1.21281 * 119.99838 * 5.79468 * 15 14 13 17 17 C 1.50696 * 120.00141 * 185.78517 * 15 14 13 18 18 C 1.52998 * 109.47160 * 175.97056 * 17 15 14 19 19 C 1.53002 * 109.47200 * 55.97092 * 17 15 14 20 20 C 1.50704 * 109.47411 * 295.97311 * 17 15 14 21 21 C 1.39873 * 126.03502 * 352.01943 * 20 17 15 22 22 N 1.30842 * 108.20029 * 180.26658 * 21 20 17 23 23 N 1.40083 * 108.20476 * 0.02562 * 22 21 20 24 24 C 1.46500 * 126.03532 * 179.97438 * 23 22 21 25 25 C 1.34947 * 107.92901 * 359.97438 * 23 22 21 26 26 C 1.46932 * 118.73671 * 53.85941 * 14 13 12 27 27 C 1.53042 * 109.46272 * 60.06575 * 11 2 1 28 28 H 1.09006 * 109.46996 * 273.66100 * 1 2 3 29 29 H 1.08992 * 109.47173 * 33.65724 * 1 2 3 30 30 H 1.09000 * 109.47387 * 153.65873 * 1 2 3 31 31 H 0.97000 * 119.99920 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.44909 * 180.02562 * 11 2 1 33 33 H 1.08997 * 109.50387 * 61.43544 * 12 11 2 34 34 H 1.08999 * 109.52545 * 301.35293 * 12 11 2 35 35 H 1.09000 * 109.58670 * 185.57449 * 13 12 11 36 36 H 1.09000 * 109.70477 * 65.22347 * 13 12 11 37 37 H 1.09001 * 109.47021 * 184.29766 * 18 17 15 38 38 H 1.08998 * 109.46997 * 304.29489 * 18 17 15 39 39 H 1.09000 * 109.47360 * 64.29498 * 18 17 15 40 40 H 1.09003 * 109.46755 * 305.44688 * 19 17 15 41 41 H 1.08992 * 109.47029 * 65.44647 * 19 17 15 42 42 H 1.09005 * 109.47439 * 185.45347 * 19 17 15 43 43 H 1.07992 * 125.90130 * 0.27570 * 21 20 17 44 44 H 1.09004 * 109.46853 * 270.01794 * 24 23 22 45 45 H 1.08994 * 109.47349 * 30.02219 * 24 23 22 46 46 H 1.09000 * 109.47281 * 150.02732 * 24 23 22 47 47 H 1.08001 * 126.12942 * 180.02562 * 25 23 22 48 48 H 1.09005 * 109.58611 * 65.92837 * 26 14 13 49 49 H 1.09005 * 109.58391 * 186.34664 * 26 14 13 50 50 H 1.09000 * 109.49253 * 298.56739 * 27 11 2 51 51 H 1.09000 * 109.49774 * 58.63026 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1800 1.2146 -0.3226 5 6 1.5195 2.3511 0.4146 6 7 0.3985 2.2846 1.1009 7 14 2.2627 4.0137 -0.0016 8 1 1.6386 4.5381 -1.2428 9 1 2.0146 4.9603 1.1154 10 1 3.7256 3.8643 -0.2080 11 6 2.1975 -1.2687 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6212 -3.3818 1.2624 14 7 2.3849 -4.0910 -0.0024 15 6 1.9587 -5.3697 -0.0035 16 8 1.6662 -5.9122 1.0410 17 6 1.8456 -6.1251 -1.3025 18 6 1.4401 -7.5725 -1.0171 19 6 3.1955 -6.1062 -2.0227 20 6 0.8025 -5.4735 -2.1734 21 6 -0.0623 -4.4430 -1.7905 22 7 -0.8237 -4.1475 -2.8127 23 7 -0.4672 -4.9821 -3.8798 24 6 -1.0731 -4.9821 -5.2136 25 6 0.5328 -5.7862 -3.4621 26 6 2.6278 -3.3818 -1.2660 27 6 1.8289 -2.0698 -1.2514 28 1 -0.3633 0.0656 1.0256 29 1 -0.3633 0.8553 -0.5695 30 1 -0.3634 -0.9209 -0.4560 31 1 -0.0421 3.0990 1.3903 32 1 3.2691 -1.0692 0.0000 33 1 0.7604 -2.2928 1.2364 34 1 2.0685 -1.4910 2.1393 35 1 2.2899 -4.0010 2.0960 36 1 3.6845 -3.1664 1.3674 37 1 1.4325 -8.1381 -1.9489 38 1 2.1541 -8.0203 -0.3260 39 1 0.4447 -7.5902 -0.5732 40 1 3.5303 -5.0755 -2.1398 41 1 3.9276 -6.6618 -1.4368 42 1 3.0900 -6.5677 -3.0046 43 1 -0.0958 -3.9726 -0.8190 44 1 -1.9130 -5.6767 -5.2311 45 1 -1.4261 -3.9790 -5.4523 46 1 -0.3309 -5.2910 -5.9498 47 1 1.0292 -6.5435 -4.0508 48 1 3.6914 -3.1641 -1.3643 49 1 2.3008 -4.0012 -2.1013 50 1 0.7616 -2.2910 -1.2402 51 1 2.0705 -1.4876 -2.1406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985733594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:45 Heat of formation + Delta-G solvation = 61.806798 kcal Electronic energy + Delta-G solvation = -31321.470590 eV Core-core repulsion = 27451.248757 eV Total energy + Delta-G solvation = -3870.221834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.71929 -41.08550 -39.05917 -36.77520 -36.43518 -33.89145 -33.78012 -32.02897 -31.41988 -30.29384 -28.07829 -28.03667 -27.62736 -26.67255 -24.71263 -24.07905 -23.16356 -22.26027 -21.34627 -20.55656 -19.64045 -18.76767 -18.35926 -17.40602 -16.94324 -16.61910 -16.31880 -16.15526 -15.77198 -15.42301 -15.15997 -15.14943 -14.90492 -14.80743 -14.60042 -14.16297 -13.84272 -13.72302 -13.53171 -13.42318 -13.31730 -13.16695 -13.00631 -12.95551 -12.81262 -12.71507 -12.62988 -12.46371 -12.34898 -12.16754 -12.06574 -11.98439 -11.72022 -11.57371 -11.39007 -11.20041 -10.65885 -10.54121 -10.32090 -9.59904 -9.25430 -8.79465 -7.81627 -5.26271 0.99033 1.46132 1.47478 1.56578 1.58085 1.75664 1.80817 2.07730 2.51634 3.31439 3.41333 3.57994 3.67044 3.87796 4.03494 4.10263 4.13368 4.20488 4.22074 4.23770 4.31682 4.39164 4.42686 4.51468 4.56797 4.72555 4.75515 4.79135 4.82875 4.84286 4.88315 4.90144 4.91296 5.00101 5.00786 5.08623 5.09677 5.19023 5.22512 5.35649 5.37912 5.45454 5.51393 5.58801 5.60902 5.67184 5.69206 6.20509 6.32629 6.49846 6.74147 7.15149 7.21542 7.89075 8.34342 9.22678 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.003734 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.432589 B = 7496.413564 C = 8613.739044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.609 5.609 3 C -0.259 4.259 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.298 1.298 10 H -0.264 1.264 11 C 0.176 3.824 12 C -0.131 4.131 13 C 0.122 3.878 14 N -0.601 5.601 15 C 0.521 3.479 16 O -0.585 6.585 17 C 0.009 3.991 18 C -0.117 4.117 19 C -0.150 4.150 20 C -0.243 4.243 21 C 0.048 3.952 22 N -0.332 5.332 23 N -0.374 5.374 24 C 0.092 3.908 25 C 0.089 3.911 26 C 0.109 3.891 27 C -0.135 4.135 28 H -0.006 1.006 29 H 0.013 0.987 30 H 0.018 0.982 31 H 0.246 0.754 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.056 0.944 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.147 0.853 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.224 0.776 48 H 0.086 0.914 49 H 0.118 0.882 50 H 0.053 0.947 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -22.402 -15.615 27.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.331 5.331 3 C -0.389 4.389 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.225 1.225 10 H -0.188 1.188 11 C 0.070 3.930 12 C -0.171 4.171 13 C -0.002 4.002 14 N -0.332 5.332 15 C 0.311 3.689 16 O -0.465 6.465 17 C 0.004 3.996 18 C -0.175 4.175 19 C -0.207 4.207 20 C -0.255 4.255 21 C -0.138 4.138 22 N -0.154 5.154 23 N -0.155 5.155 24 C -0.047 4.047 25 C -0.059 4.059 26 C -0.013 4.013 27 C -0.175 4.175 28 H 0.013 0.987 29 H 0.032 0.968 30 H 0.037 0.963 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.118 0.882 43 H 0.165 0.835 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.143 0.857 47 H 0.240 0.760 48 H 0.104 0.896 49 H 0.135 0.865 50 H 0.071 0.929 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.824 -21.777 -15.620 27.071 hybrid contribution 0.104 1.318 1.115 1.730 sum 3.928 -20.459 -14.505 25.385 Atomic orbital electron populations 1.20304 0.83527 0.95153 0.96663 1.44201 1.01604 1.01536 1.85778 1.19632 0.97155 0.86049 1.36045 0.90621 1.25719 0.98739 1.01653 0.98982 1.70280 1.21263 1.26966 1.40329 0.85243 0.78559 0.79955 0.76690 1.21701 1.22534 1.18812 1.20505 0.95396 0.84579 0.92567 1.22271 0.99084 0.95834 0.99928 1.21503 1.00097 0.91929 0.86633 1.48139 1.65643 1.11825 1.07623 1.21149 0.74845 0.81390 0.91549 1.90640 1.51127 1.69133 1.35637 1.19030 0.95887 0.95004 0.89638 1.21653 1.00771 0.92433 1.02617 1.22252 0.92748 1.04062 1.01637 1.19624 1.05436 1.04306 0.96164 1.23583 0.95077 0.97476 0.97625 1.77435 1.24584 1.17268 0.96149 1.48827 1.28066 1.27051 1.11576 1.22226 1.00522 1.04734 0.77237 1.22767 0.91517 0.96708 0.94884 1.22346 1.00308 0.92564 0.86102 1.22417 1.00348 0.95983 0.98723 0.98726 0.96819 0.96330 0.94523 0.91770 0.94492 0.92867 0.90555 0.89727 0.88753 0.92526 0.94508 0.90972 0.91561 0.88220 0.83546 0.89541 0.90078 0.85688 0.75966 0.89589 0.86482 0.92887 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.01 8.05 127.77 1.03 11.04 16 2 N -0.61 -31.10 2.81 -702.63 -1.98 -33.07 16 3 C -0.26 -14.34 9.61 84.03 0.81 -13.53 16 4 H 0.08 4.00 7.82 -2.91 -0.02 3.98 16 5 C -0.06 -3.22 5.02 84.86 0.43 -2.79 16 6 N -0.94 -57.70 10.75 21.65 0.23 -57.46 16 7 Si 0.97 45.85 29.58 68.60 2.03 47.88 16 8 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 9 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 10 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 11 C 0.18 7.07 2.55 45.02 0.11 7.19 16 12 C -0.13 -5.03 5.34 30.67 0.16 -4.86 16 13 C 0.12 3.79 6.44 86.37 0.56 4.34 16 14 N -0.60 -16.83 2.59 -818.07 -2.12 -18.94 16 15 C 0.52 14.93 5.51 87.66 0.48 15.41 16 16 O -0.59 -21.25 15.40 -3.03 -0.05 -21.29 16 17 C 0.01 0.17 0.67 -53.67 -0.04 0.14 16 18 C -0.12 -2.13 7.72 71.98 0.56 -1.58 16 19 C -0.15 -1.91 8.02 71.98 0.58 -1.33 16 20 C -0.24 -5.02 2.94 -20.14 -0.06 -5.08 16 21 C 0.05 1.37 7.93 85.24 0.68 2.05 16 22 N -0.33 -9.61 12.58 -57.02 -0.72 -10.33 16 23 N -0.37 -6.88 4.01 -369.57 -1.48 -8.36 16 24 C 0.09 0.85 11.47 127.77 1.47 2.31 16 25 C 0.09 1.24 10.75 83.54 0.90 2.14 16 26 C 0.11 2.70 3.63 86.50 0.31 3.02 16 27 C -0.13 -4.50 5.05 30.82 0.16 -4.35 16 28 H -0.01 -0.32 7.49 -2.38 -0.02 -0.34 16 29 H 0.01 0.76 7.14 -2.39 -0.02 0.74 16 30 H 0.02 0.88 6.46 -2.39 -0.02 0.87 16 31 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.06 2.53 7.84 -2.39 -0.02 2.51 16 33 H 0.04 1.55 7.72 -2.39 -0.02 1.53 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.54 7.00 -2.39 -0.02 2.53 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.10 8.04 -2.39 -0.02 1.08 16 39 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.99 4.69 -2.39 -0.01 0.98 16 41 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.60 7.54 -2.38 -0.02 0.59 16 43 H 0.15 5.09 6.29 -2.91 -0.02 5.07 16 44 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 47 H 0.22 0.73 7.84 -2.91 -0.02 0.70 16 48 H 0.09 1.81 7.97 -2.38 -0.02 1.79 16 49 H 0.12 2.52 3.23 -2.38 -0.01 2.51 16 50 H 0.05 1.96 4.16 -2.39 -0.01 1.95 16 51 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -78.62 382.54 4.97 -73.65 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: 0.92 Total: 13.82 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 8.13 Total: 14.12 kcal Atomic # 7 Polarization: -122.11 SS G_CDS: -6.06 Total: -128.17 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -78.62 4.97 -73.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985733594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.456 kcal (2) G-P(sol) polarization free energy of solvation -78.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds