Wall clock time and date at job start Tue Mar 31 2020 19:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47399 * 2 1 4 4 C 1.50707 * 109.46903 * 120.00076 * 2 1 3 5 5 N 1.30447 * 125.98875 * 300.15626 * 4 2 1 6 6 N 1.39928 * 108.89524 * 180.24883 * 5 4 2 7 7 C 1.46511 * 125.75251 * 179.75353 * 6 5 4 8 8 C 1.34255 * 108.49846 * 359.75225 * 6 5 4 9 9 C 1.38051 * 107.41178 * 0.02562 * 8 6 5 10 10 C 1.47430 * 126.41135 * 179.97438 * 9 8 6 11 11 O 1.21601 * 119.99766 * 224.24394 * 10 9 8 12 12 N 1.34780 * 120.00188 * 44.52574 * 10 9 8 13 13 C 1.46924 * 120.63049 * 4.82609 * 12 10 9 14 14 C 1.53624 * 108.54212 * 126.37246 * 13 12 10 15 15 C 1.53032 * 109.24274 * 54.85361 * 14 13 12 16 16 N 1.46496 * 109.45022 * 178.49679 * 15 14 13 17 17 C 1.46505 * 120.00041 * 60.06516 * 16 15 14 18 18 C 1.36939 * 120.00398 * 240.06232 * 16 15 14 19 19 H 1.08002 * 119.99510 * 23.69877 * 18 16 15 20 20 C 1.38811 * 120.00198 * 203.69562 * 18 16 15 21 21 N 1.31615 * 119.99974 * 15.46456 * 20 18 16 22 22 Si 1.86802 * 119.99881 * 195.46127 * 20 18 16 23 23 H 1.48505 * 109.46714 * 90.00251 * 22 20 18 24 24 H 1.48498 * 109.47024 * 210.00141 * 22 20 18 25 25 H 1.48498 * 109.47317 * 330.00655 * 22 20 18 26 26 C 1.53039 * 109.54152 * 298.51480 * 15 14 13 27 27 C 1.46927 * 120.62824 * 185.10876 * 12 10 9 28 28 H 1.08997 * 109.46573 * 60.00286 * 1 2 3 29 29 H 1.08997 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46897 * 300.00015 * 1 2 3 31 31 H 1.09006 * 109.47209 * 239.99560 * 2 1 3 32 32 H 1.08996 * 109.46918 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47024 * 299.99438 * 3 2 1 34 34 H 1.08995 * 109.47108 * 60.00115 * 3 2 1 35 35 H 1.09001 * 109.46590 * 270.00238 * 7 6 5 36 36 H 1.08997 * 109.46654 * 29.99760 * 7 6 5 37 37 H 1.08995 * 109.47216 * 150.00096 * 7 6 5 38 38 H 1.07997 * 126.29969 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.58906 * 246.20439 * 13 12 10 40 40 H 1.09006 * 109.58464 * 6.62875 * 13 12 10 41 41 H 1.09008 * 109.63355 * 294.86398 * 14 13 12 42 42 H 1.08999 * 109.42974 * 174.72879 * 14 13 12 43 43 H 1.09000 * 109.46160 * 58.53388 * 15 14 13 44 44 H 1.08997 * 109.47012 * 90.29440 * 17 16 15 45 45 H 1.08996 * 109.47198 * 210.29931 * 17 16 15 46 46 H 1.09000 * 109.46858 * 330.29984 * 17 16 15 47 47 H 0.97001 * 119.99723 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.49529 * 301.40921 * 26 15 14 49 49 H 1.08995 * 109.52548 * 181.33222 * 26 15 14 50 50 H 1.08998 * 109.58957 * 353.37496 * 27 12 10 51 51 H 1.09004 * 109.58088 * 113.65064 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7879 -0.3698 2.4658 6 7 2.4332 -1.2706 3.3204 7 6 2.4089 -1.2285 4.7847 8 6 3.0782 -2.1799 2.5724 9 6 2.8484 -1.8637 1.2484 10 6 3.3626 -2.5904 0.0731 11 8 3.8228 -1.9745 -0.8690 12 7 3.3173 -3.9370 0.0406 13 6 2.6641 -4.6904 1.1197 14 6 1.6236 -5.6333 0.4966 15 6 2.3039 -6.5089 -0.5581 16 7 1.3232 -7.4348 -1.1299 17 6 0.1370 -6.9145 -1.8146 18 6 1.5150 -8.7866 -1.0245 19 1 2.1337 -9.1840 -0.2335 20 6 0.9143 -9.6459 -1.9342 21 7 0.4211 -9.1732 -3.0592 22 14 0.8061 -11.4732 -1.5618 23 1 -0.4585 -11.7565 -0.8368 24 1 0.8301 -12.2398 -2.8334 25 1 1.9606 -11.8759 -0.7191 26 6 2.8759 -5.6230 -1.6672 27 6 3.9257 -4.6798 -1.0716 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4423 0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.2398 -0.6216 5.1444 36 1 1.4682 -0.7919 5.1200 37 1 2.5008 -2.2405 5.1788 38 1 3.6691 -3.0062 2.9390 39 1 3.4093 -5.2717 1.6625 40 1 2.1701 -3.9980 1.8015 41 1 0.8326 -5.0476 0.0281 42 1 1.1961 -6.2662 1.2743 43 1 3.1108 -7.0759 -0.0938 44 1 0.3562 -6.7868 -2.8746 45 1 -0.6881 -7.6168 -1.6962 46 1 -0.1395 -5.9529 -1.3823 47 1 0.0017 -9.7738 -3.6950 48 1 2.0732 -5.0375 -2.1154 49 1 3.3397 -6.2483 -2.4301 50 1 4.2644 -3.9805 -1.8361 51 1 4.7734 -5.2582 -0.7042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985787986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:55 Heat of formation + Delta-G solvation = 59.974767 kcal Electronic energy + Delta-G solvation = -30186.691178 eV Core-core repulsion = 26316.389902 eV Total energy + Delta-G solvation = -3870.301276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.66692 -39.51207 -37.35510 -35.91664 -34.95785 -32.77323 -32.14954 -31.17857 -30.05701 -29.47105 -27.21750 -27.17317 -25.97446 -24.99306 -23.23828 -22.70261 -22.44503 -21.47247 -20.03820 -19.14647 -18.54112 -17.14969 -16.75187 -16.43660 -15.83346 -15.53413 -15.05708 -14.93298 -14.71334 -14.46569 -13.92492 -13.79198 -13.58569 -13.51222 -13.40901 -13.17366 -12.97317 -12.84897 -12.65551 -12.31325 -12.21951 -12.12048 -11.68610 -11.50868 -11.43692 -11.23087 -11.06884 -10.93895 -10.85223 -10.77887 -10.69681 -10.37489 -10.20576 -10.09200 -9.84296 -9.69114 -9.57252 -9.44392 -8.72005 -8.53389 -8.33050 -6.72155 -5.72634 -3.17286 1.45458 2.14504 2.18890 3.07295 3.37908 3.39968 3.44462 3.45816 4.14951 4.41638 4.49184 4.60640 4.77104 4.85896 4.88996 5.03391 5.13312 5.13966 5.26698 5.29540 5.39686 5.41729 5.47321 5.48854 5.55273 5.60339 5.67327 5.79215 5.83617 5.85128 5.93151 5.96384 6.09092 6.18732 6.20743 6.21419 6.30215 6.41231 6.44727 6.58907 6.62603 6.70992 6.84457 7.02659 7.06604 7.38212 7.45899 7.65519 7.72068 7.81203 8.40370 8.42045 9.24527 9.88863 10.39425 11.33114 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002877 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.428829 B = 9728.419110 C =10155.751661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.137 4.137 4 C 0.134 3.866 5 N -0.295 5.295 6 N -0.365 5.365 7 C 0.099 3.901 8 C 0.093 3.907 9 C -0.275 4.275 10 C 0.593 3.407 11 O -0.545 6.545 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.146 4.146 15 C 0.180 3.820 16 N -0.595 5.595 17 C 0.163 3.837 18 C -0.257 4.257 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.280 1.280 26 C -0.144 4.144 27 C 0.115 3.885 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.182 0.818 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.023 0.977 45 H 0.043 0.957 46 H -0.002 1.002 47 H 0.252 0.748 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 17.215 14.167 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.195 4.195 4 C -0.033 4.033 5 N -0.116 5.116 6 N -0.144 5.144 7 C -0.042 4.042 8 C -0.057 4.057 9 C -0.290 4.290 10 C 0.381 3.619 11 O -0.423 6.423 12 N -0.334 5.334 13 C -0.016 4.016 14 C -0.186 4.186 15 C 0.071 3.929 16 N -0.316 5.316 17 C 0.019 3.981 18 C -0.386 4.386 19 H 0.085 0.915 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.184 4.184 27 C -0.007 4.007 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.199 0.801 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.041 0.959 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.777 18.243 14.473 23.591 hybrid contribution 0.308 -1.870 -0.202 1.906 sum 4.085 16.373 14.271 22.100 Atomic orbital electron populations 1.21816 0.93744 1.02259 1.02165 1.19743 0.95896 0.95865 0.92622 1.21749 1.01363 0.94447 1.01946 1.22294 0.94725 0.92867 0.93406 1.77102 1.20183 1.14296 1.00035 1.48272 1.37790 1.21348 1.06955 1.21953 1.04563 1.04072 0.73637 1.23028 0.97149 0.94882 0.90679 1.20214 1.13084 1.02809 0.92865 1.17313 0.77784 0.81312 0.85447 1.90736 1.47047 1.67333 1.37210 1.48033 1.56241 1.05067 1.24091 1.22000 0.95613 0.94655 0.89360 1.22523 0.98007 0.97942 1.00094 1.20284 0.91474 0.89744 0.91378 1.43947 1.20255 1.01795 1.65604 1.20695 0.88998 0.93450 0.94985 1.19206 1.29409 0.81608 1.08397 0.91520 1.25009 1.01674 0.97909 0.94992 1.70081 1.42870 1.33941 1.07918 0.86296 0.77918 0.85464 0.77092 1.21581 1.21826 1.20522 1.22477 0.98091 0.97654 1.00167 1.21690 0.95605 0.94573 0.88855 0.91884 0.92497 0.92229 0.88321 0.92460 0.91986 0.92402 0.90468 0.88935 0.89087 0.80057 0.91679 0.90321 0.91947 0.91048 0.92001 0.95906 0.93776 0.98380 0.93773 0.92213 0.90657 0.89558 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.18 37.16 0.34 -1.22 16 2 C -0.02 -0.26 3.28 -91.77 -0.30 -0.56 16 3 C -0.14 -1.48 9.18 37.15 0.34 -1.14 16 4 C 0.13 1.81 5.77 -82.02 -0.47 1.34 16 5 N -0.30 -3.74 12.50 33.90 0.42 -3.31 16 6 N -0.37 -3.62 3.98 -67.59 -0.27 -3.89 16 7 C 0.10 0.50 11.44 59.85 0.68 1.19 16 8 C 0.09 0.95 9.18 -16.56 -0.15 0.80 16 9 C -0.27 -3.71 5.09 -105.06 -0.54 -4.24 16 10 C 0.59 9.28 7.26 -12.52 -0.09 9.19 16 11 O -0.55 -10.11 15.41 5.28 0.08 -10.02 16 12 N -0.60 -8.80 2.97 -173.77 -0.52 -9.32 16 13 C 0.11 1.37 5.66 -3.49 -0.02 1.35 16 14 C -0.15 -2.36 5.33 -26.39 -0.14 -2.50 16 15 C 0.18 3.49 2.55 -67.90 -0.17 3.32 16 16 N -0.59 -14.48 2.80 -173.44 -0.49 -14.96 16 17 C 0.16 4.01 8.08 59.85 0.48 4.49 16 18 C -0.26 -6.89 9.56 -15.06 -0.14 -7.03 16 19 H 0.07 1.74 7.84 -52.49 -0.41 1.33 16 20 C 0.00 0.08 5.01 -17.43 -0.09 -0.01 16 21 N -0.90 -26.25 10.93 55.49 0.61 -25.64 16 22 Si 0.90 21.59 29.58 -169.99 -5.03 16.56 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 C -0.14 -2.63 5.34 -26.61 -0.14 -2.77 16 27 C 0.12 1.78 6.44 -3.71 -0.02 1.76 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.41 6.72 -51.93 -0.35 1.06 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.18 1.26 7.62 -52.49 -0.40 0.86 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.90 4.97 -51.93 -0.26 0.64 16 41 H 0.06 1.10 6.72 -51.92 -0.35 0.75 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.20 7.87 -51.93 -0.41 0.79 16 44 H 0.02 0.61 7.60 -51.93 -0.39 0.21 16 45 H 0.04 1.17 7.13 -51.93 -0.37 0.80 16 46 H 0.00 -0.05 6.46 -51.93 -0.34 -0.38 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.06 1.18 7.72 -51.93 -0.40 0.78 16 49 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 50 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 51 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 399.62 15.07 6.02 6.02 Total: -1.00 -33.52 399.62 -8.27 -41.79 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.67 Total: -1.16 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -0.43 Total: 3.94 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -0.24 Total: -57.13 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.02 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.52 -8.27 -41.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985787986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.766 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds