Wall clock time and date at job start Tue Mar 31 2020 19:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47399 * 2 1 4 4 C 1.50707 * 109.46903 * 120.00076 * 2 1 3 5 5 N 1.30447 * 125.98875 * 300.15626 * 4 2 1 6 6 N 1.39928 * 108.89524 * 180.24883 * 5 4 2 7 7 C 1.46511 * 125.75251 * 179.75353 * 6 5 4 8 8 C 1.34255 * 108.49846 * 359.75225 * 6 5 4 9 9 C 1.38051 * 107.41178 * 0.02562 * 8 6 5 10 10 C 1.47430 * 126.41135 * 179.97438 * 9 8 6 11 11 O 1.21601 * 119.99766 * 224.24394 * 10 9 8 12 12 N 1.34780 * 120.00188 * 44.52574 * 10 9 8 13 13 C 1.46924 * 120.63049 * 4.82609 * 12 10 9 14 14 C 1.53624 * 108.54212 * 126.37246 * 13 12 10 15 15 C 1.53032 * 109.24274 * 54.85361 * 14 13 12 16 16 N 1.46496 * 109.45022 * 178.49679 * 15 14 13 17 17 C 1.46505 * 120.00041 * 60.06516 * 16 15 14 18 18 C 1.36939 * 120.00398 * 240.06232 * 16 15 14 19 19 H 1.08002 * 119.99510 * 23.69877 * 18 16 15 20 20 C 1.38811 * 120.00198 * 203.69562 * 18 16 15 21 21 N 1.31615 * 119.99974 * 15.46456 * 20 18 16 22 22 Si 1.86802 * 119.99881 * 195.46127 * 20 18 16 23 23 H 1.48505 * 109.46714 * 90.00251 * 22 20 18 24 24 H 1.48498 * 109.47024 * 210.00141 * 22 20 18 25 25 H 1.48498 * 109.47317 * 330.00655 * 22 20 18 26 26 C 1.53039 * 109.54152 * 298.51480 * 15 14 13 27 27 C 1.46927 * 120.62824 * 185.10876 * 12 10 9 28 28 H 1.08997 * 109.46573 * 60.00286 * 1 2 3 29 29 H 1.08997 * 109.47368 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46897 * 300.00015 * 1 2 3 31 31 H 1.09006 * 109.47209 * 239.99560 * 2 1 3 32 32 H 1.08996 * 109.46918 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47024 * 299.99438 * 3 2 1 34 34 H 1.08995 * 109.47108 * 60.00115 * 3 2 1 35 35 H 1.09001 * 109.46590 * 270.00238 * 7 6 5 36 36 H 1.08997 * 109.46654 * 29.99760 * 7 6 5 37 37 H 1.08995 * 109.47216 * 150.00096 * 7 6 5 38 38 H 1.07997 * 126.29969 * 179.97438 * 8 6 5 39 39 H 1.08993 * 109.58906 * 246.20439 * 13 12 10 40 40 H 1.09006 * 109.58464 * 6.62875 * 13 12 10 41 41 H 1.09008 * 109.63355 * 294.86398 * 14 13 12 42 42 H 1.08999 * 109.42974 * 174.72879 * 14 13 12 43 43 H 1.09000 * 109.46160 * 58.53388 * 15 14 13 44 44 H 1.08997 * 109.47012 * 90.29440 * 17 16 15 45 45 H 1.08996 * 109.47198 * 210.29931 * 17 16 15 46 46 H 1.09000 * 109.46858 * 330.29984 * 17 16 15 47 47 H 0.97001 * 119.99723 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.49529 * 301.40921 * 26 15 14 49 49 H 1.08995 * 109.52548 * 181.33222 * 26 15 14 50 50 H 1.08998 * 109.58957 * 353.37496 * 27 12 10 51 51 H 1.09004 * 109.58088 * 113.65064 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7879 -0.3698 2.4658 6 7 2.4332 -1.2706 3.3204 7 6 2.4089 -1.2285 4.7847 8 6 3.0782 -2.1799 2.5724 9 6 2.8484 -1.8637 1.2484 10 6 3.3626 -2.5904 0.0731 11 8 3.8228 -1.9745 -0.8690 12 7 3.3173 -3.9370 0.0406 13 6 2.6641 -4.6904 1.1197 14 6 1.6236 -5.6333 0.4966 15 6 2.3039 -6.5089 -0.5581 16 7 1.3232 -7.4348 -1.1299 17 6 0.1370 -6.9145 -1.8146 18 6 1.5150 -8.7866 -1.0245 19 1 2.1337 -9.1840 -0.2335 20 6 0.9143 -9.6459 -1.9342 21 7 0.4211 -9.1732 -3.0592 22 14 0.8061 -11.4732 -1.5618 23 1 -0.4585 -11.7565 -0.8368 24 1 0.8301 -12.2398 -2.8334 25 1 1.9606 -11.8759 -0.7191 26 6 2.8759 -5.6230 -1.6672 27 6 3.9257 -4.6798 -1.0716 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4423 0.0005 33 1 1.6769 1.9562 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 3.2398 -0.6216 5.1444 36 1 1.4682 -0.7919 5.1200 37 1 2.5008 -2.2405 5.1788 38 1 3.6691 -3.0062 2.9390 39 1 3.4093 -5.2717 1.6625 40 1 2.1701 -3.9980 1.8015 41 1 0.8326 -5.0476 0.0281 42 1 1.1961 -6.2662 1.2743 43 1 3.1108 -7.0759 -0.0938 44 1 0.3562 -6.7868 -2.8746 45 1 -0.6881 -7.6168 -1.6962 46 1 -0.1395 -5.9529 -1.3823 47 1 0.0017 -9.7738 -3.6950 48 1 2.0732 -5.0375 -2.1154 49 1 3.3397 -6.2483 -2.4301 50 1 4.2644 -3.9805 -1.8361 51 1 4.7734 -5.2582 -0.7042 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985787986.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:54 Heat of formation + Delta-G solvation = 39.663388 kcal Electronic energy + Delta-G solvation = -30187.571946 eV Core-core repulsion = 26316.389902 eV Total energy + Delta-G solvation = -3871.182044 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.54712 -40.72385 -38.80702 -36.89927 -36.50829 -34.02221 -33.36167 -32.42850 -31.49366 -30.77095 -28.05277 -28.02345 -27.91059 -26.42204 -24.50159 -24.10441 -23.39940 -22.70207 -21.25616 -20.29197 -19.66088 -18.73185 -18.20213 -17.53172 -16.89856 -16.66856 -16.53130 -15.98104 -15.75114 -15.60383 -15.43431 -15.09774 -15.04796 -14.67362 -14.51492 -14.32915 -14.13934 -13.91848 -13.65821 -13.47724 -13.30210 -13.13468 -13.08826 -12.96252 -12.81080 -12.62420 -12.40266 -12.34455 -12.19905 -12.12583 -12.03277 -11.97247 -11.80923 -11.66144 -11.56230 -11.20655 -10.86114 -10.58885 -10.28775 -9.71476 -9.46451 -8.73660 -7.80850 -5.27789 0.63916 1.17885 1.48589 1.48839 1.49777 1.58425 1.94556 2.30113 2.53442 3.33112 3.34229 3.62653 3.66228 3.83009 3.96528 3.98810 4.10893 4.19529 4.22220 4.22645 4.39703 4.41853 4.44862 4.48142 4.57155 4.59466 4.64389 4.75330 4.75869 4.76881 4.81557 4.87058 4.91946 4.93959 4.95615 5.03229 5.07916 5.13709 5.22762 5.26767 5.31439 5.40672 5.51967 5.53078 5.62485 5.69331 5.70783 5.96260 6.36541 6.47038 6.62656 7.17334 7.23729 7.90638 8.37084 9.23714 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.002877 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.428829 B = 9728.419110 C =10155.751661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.314 5.314 6 N -0.358 5.358 7 C 0.087 3.913 8 C 0.116 3.884 9 C -0.312 4.312 10 C 0.594 3.406 11 O -0.585 6.585 12 N -0.601 5.601 13 C 0.116 3.884 14 C -0.134 4.134 15 C 0.174 3.826 16 N -0.609 5.609 17 C 0.183 3.817 18 C -0.260 4.260 19 H 0.077 0.923 20 C -0.055 4.055 21 N -0.940 5.940 22 Si 0.967 3.033 23 H -0.288 1.288 24 H -0.300 1.300 25 H -0.264 1.264 26 C -0.132 4.132 27 C 0.126 3.874 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.222 0.778 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.077 0.923 43 H 0.069 0.931 44 H -0.008 1.008 45 H 0.017 0.983 46 H 0.022 0.978 47 H 0.246 0.754 48 H 0.036 0.964 49 H 0.052 0.948 50 H 0.075 0.925 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.262 17.281 17.899 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 C -0.187 4.187 4 C -0.048 4.048 5 N -0.136 5.136 6 N -0.135 5.135 7 C -0.052 4.052 8 C -0.037 4.037 9 C -0.327 4.327 10 C 0.384 3.616 11 O -0.466 6.466 12 N -0.333 5.333 13 C -0.007 4.007 14 C -0.174 4.174 15 C 0.068 3.932 16 N -0.331 5.331 17 C 0.038 3.962 18 C -0.390 4.390 19 H 0.094 0.906 20 C -0.250 4.250 21 N -0.587 5.587 22 Si 0.796 3.204 23 H -0.215 1.215 24 H -0.227 1.227 25 H -0.188 1.188 26 C -0.172 4.172 27 C 0.003 3.997 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.142 0.858 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.010 0.990 45 H 0.036 0.964 46 H 0.040 0.960 47 H 0.055 0.945 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.093 0.907 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.819 18.335 18.276 26.332 hybrid contribution 0.010 -1.834 -1.277 2.235 sum 4.829 16.501 16.999 24.178 Atomic orbital electron populations 1.21750 0.92825 1.01617 1.03010 1.19722 0.96665 0.96426 0.91748 1.21681 1.00490 0.93678 1.02852 1.22392 0.95256 0.93222 0.93884 1.77044 1.21140 1.15475 0.99953 1.48694 1.36236 1.20160 1.08445 1.22411 1.05443 1.06621 0.70706 1.23506 0.95776 0.95044 0.89330 1.20143 1.15273 1.03752 0.93507 1.17644 0.76976 0.81347 0.85642 1.90709 1.48802 1.68103 1.38944 1.48068 1.56109 1.05010 1.24133 1.22103 0.95465 0.94380 0.88725 1.22346 0.98261 0.97775 0.99049 1.20535 0.91003 0.89621 0.92063 1.44198 1.21207 1.02073 1.65661 1.20350 0.88589 0.93732 0.93543 1.19613 1.28471 0.82901 1.08015 0.90561 1.25800 1.02181 1.02060 0.94993 1.70255 1.44403 1.35047 1.08991 0.85263 0.78188 0.80476 0.76504 1.21508 1.22726 1.18840 1.22275 0.98070 0.97452 0.99413 1.21503 0.95115 0.93878 0.89227 0.90584 0.93818 0.91755 0.90954 0.93674 0.90579 0.91905 0.88899 0.88664 0.85812 0.76141 0.88250 0.88245 0.93877 0.90429 0.91290 0.99017 0.96425 0.95967 0.94492 0.94556 0.92892 0.90660 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.18 71.98 0.66 -2.29 16 2 C -0.03 -0.64 3.28 -11.54 -0.04 -0.67 16 3 C -0.13 -2.79 9.18 71.98 0.66 -2.12 16 4 C 0.12 3.13 5.77 43.52 0.25 3.38 16 5 N -0.31 -7.40 12.50 -46.67 -0.58 -7.99 16 6 N -0.36 -5.85 3.98 -367.76 -1.46 -7.31 16 7 C 0.09 0.51 11.44 127.77 1.46 1.97 16 8 C 0.12 1.92 9.18 84.28 0.77 2.69 16 9 C -0.31 -7.90 5.09 -20.15 -0.10 -8.00 16 10 C 0.59 18.12 7.26 86.66 0.63 18.75 16 11 O -0.58 -22.13 15.41 -4.03 -0.06 -22.19 16 12 N -0.60 -16.52 2.97 -821.95 -2.44 -18.95 16 13 C 0.12 2.53 5.66 86.51 0.49 3.02 16 14 C -0.13 -4.08 5.33 30.82 0.16 -3.92 16 15 C 0.17 6.61 2.55 45.02 0.11 6.72 16 16 N -0.61 -29.84 2.80 -702.65 -1.97 -31.81 16 17 C 0.18 9.27 8.08 127.77 1.03 10.30 16 18 C -0.26 -13.89 9.56 84.03 0.80 -13.08 16 19 H 0.08 3.87 7.84 -2.91 -0.02 3.84 16 20 C -0.06 -3.08 5.01 84.86 0.42 -2.66 16 21 N -0.94 -56.31 10.93 21.65 0.24 -56.07 16 22 Si 0.97 44.57 29.58 68.60 2.03 46.60 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 25 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 26 C -0.13 -4.89 5.34 30.67 0.16 -4.72 16 27 C 0.13 3.77 6.44 86.36 0.56 4.33 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 2.20 6.72 -2.38 -0.02 2.18 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.22 1.74 7.62 -2.91 -0.02 1.72 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.10 1.84 4.97 -2.38 -0.01 1.83 16 41 H 0.04 1.47 6.72 -2.38 -0.02 1.46 16 42 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.53 7.87 -2.39 -0.02 2.51 16 44 H -0.01 -0.48 7.60 -2.39 -0.02 -0.50 16 45 H 0.02 0.94 7.13 -2.39 -0.02 0.93 16 46 H 0.02 0.99 6.46 -2.39 -0.02 0.97 16 47 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 48 H 0.04 1.49 7.72 -2.39 -0.02 1.47 16 49 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.07 2.46 7.00 -2.39 -0.02 2.44 16 51 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -76.33 399.62 4.70 -71.64 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.90 Total: 12.39 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 8.04 Total: 13.70 kcal Atomic # 7 Polarization: -115.91 SS G_CDS: -6.22 Total: -122.13 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.06 Total: -22.19 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -76.33 4.70 -71.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985787986.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.301 kcal (2) G-P(sol) polarization free energy of solvation -76.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds