Wall clock time and date at job start Tue Mar 31 2020 19:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47093 * 2 1 4 4 C 1.50708 * 109.47292 * 179.97438 * 3 2 1 5 5 C 1.38046 * 126.29081 * 270.00407 * 4 3 2 6 6 C 1.47431 * 126.41632 * 359.95245 * 5 4 3 7 7 O 1.21608 * 119.99816 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99991 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99895 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.49746 * 325.06148 * 9 8 6 11 11 C 1.53099 * 109.51592 * 85.12980 * 9 8 6 12 12 C 1.53040 * 109.50223 * 58.62861 * 11 9 8 13 13 C 1.53192 * 109.33836 * 61.34998 * 12 11 9 14 14 N 1.46928 * 108.77765 * 305.34788 * 13 12 11 15 15 C 1.36934 * 120.63076 * 233.59106 * 14 13 12 16 16 H 1.08004 * 119.99740 * 150.88992 * 15 14 13 17 17 C 1.38805 * 120.00058 * 330.88354 * 15 14 13 18 18 N 1.31618 * 120.00363 * 160.74510 * 17 15 14 19 19 Si 1.86808 * 120.00201 * 340.74564 * 17 15 14 20 20 H 1.48497 * 109.46971 * 92.29804 * 19 17 15 21 21 H 1.48500 * 109.47031 * 212.30323 * 19 17 15 22 22 H 1.48504 * 109.46985 * 332.30151 * 19 17 15 23 23 C 1.46928 * 118.73362 * 53.60420 * 14 13 12 24 24 H 1.09001 * 109.58274 * 66.18914 * 23 14 13 25 25 C 1.52999 * 109.58220 * 186.46201 * 23 14 13 26 26 C 1.41289 * 107.16849 * 180.22031 * 5 4 3 27 27 N 1.30448 * 108.02226 * 359.58448 * 26 5 4 28 28 N 1.34255 * 126.29149 * 89.97346 * 4 3 2 29 29 C 1.46499 * 125.75339 * 0.02562 * 28 4 3 30 30 H 1.09001 * 109.47324 * 299.99715 * 1 2 3 31 31 H 1.08996 * 109.47740 * 60.00091 * 1 2 3 32 32 H 1.09008 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47130 * 239.99773 * 2 1 3 34 34 H 1.09001 * 109.47475 * 120.00291 * 2 1 3 35 35 H 1.08999 * 109.47414 * 60.00397 * 3 2 1 36 36 H 1.08996 * 109.47326 * 300.00010 * 3 2 1 37 37 H 0.96996 * 120.00046 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.50637 * 298.60694 * 11 9 8 39 39 H 1.09001 * 109.45525 * 178.62506 * 11 9 8 40 40 H 1.08999 * 109.49917 * 301.38051 * 12 11 9 41 41 H 1.08998 * 109.49844 * 181.31152 * 12 11 9 42 42 H 1.09002 * 109.58917 * 65.13600 * 13 12 11 43 43 H 1.08997 * 109.58848 * 185.42039 * 13 12 11 44 44 H 0.97002 * 120.00317 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.46943 * 60.00636 * 25 23 14 46 46 H 1.09001 * 109.47459 * 180.02562 * 25 23 14 47 47 H 1.09000 * 109.47529 * 300.00316 * 25 23 14 48 48 H 1.08002 * 125.98529 * 179.73900 * 26 5 4 49 49 H 1.09001 * 109.47267 * 89.99671 * 29 28 4 50 50 H 1.09002 * 109.47446 * 209.99990 * 29 28 4 51 51 H 1.09005 * 109.47285 * 329.99840 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3636 1.4426 1.1137 6 6 3.9247 1.4437 2.5211 7 8 2.7383 1.4441 2.7881 8 7 4.8384 1.4442 3.5119 9 6 4.4023 1.4459 4.9105 10 1 3.4902 2.0349 5.0064 11 6 4.1324 0.0086 5.3637 12 6 5.4041 -0.8266 5.1985 13 6 6.5130 -0.2418 6.0789 14 7 6.6787 1.1803 5.7485 15 6 7.9083 1.6795 5.4110 16 1 7.9829 2.5271 4.7458 17 6 9.0587 1.0963 5.9240 18 7 10.2186 1.3011 5.3365 19 14 8.9609 0.0207 7.4482 20 1 8.7804 -1.3965 7.0432 21 1 10.2157 0.1560 8.2308 22 1 7.8089 0.4478 8.2823 23 6 5.4999 2.0565 5.7875 24 1 5.1423 2.1423 6.8136 25 6 5.8731 3.4421 5.2569 26 6 5.6987 1.4478 0.6514 27 7 5.6742 1.4416 -0.6528 28 7 4.3421 1.4419 -1.0811 29 6 3.8911 1.4415 -2.4750 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 5.7847 1.4442 3.2989 38 1 3.3348 -0.4205 4.7572 39 1 3.8315 0.0088 6.4114 40 1 5.7193 -0.8070 4.1553 41 1 5.2054 -1.8552 5.4993 42 1 6.2380 -0.3433 7.1288 43 1 7.4461 -0.7734 5.8926 44 1 11.0226 0.8939 5.6952 45 1 6.2257 3.3547 4.2292 46 1 4.9976 4.0907 5.2870 47 1 6.6620 3.8682 5.8767 48 1 6.5843 1.4532 1.2696 49 1 3.7795 2.4691 -2.8210 50 1 4.6258 0.9273 -3.0945 51 1 2.9323 0.9280 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993538526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:37 Heat of formation + Delta-G solvation = 49.860967 kcal Electronic energy + Delta-G solvation = -30746.171366 eV Core-core repulsion = 26875.431522 eV Total energy + Delta-G solvation = -3870.739844 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.45722 -39.44174 -37.54641 -35.40300 -33.89278 -33.36044 -32.55595 -31.67381 -30.72341 -30.00371 -27.35400 -26.59325 -26.24401 -24.85839 -23.02941 -22.16457 -21.83591 -20.91175 -20.40438 -19.43071 -18.74018 -17.49284 -16.46545 -15.95217 -15.76162 -15.46497 -15.21469 -15.00756 -14.61619 -14.52052 -14.14506 -13.74493 -13.62204 -13.47921 -13.46521 -13.14683 -12.93575 -12.82028 -12.65234 -12.49409 -12.35536 -12.07031 -11.67411 -11.59009 -11.51481 -11.43801 -11.21298 -11.00749 -10.77342 -10.63363 -10.59527 -10.48358 -10.23122 -9.92345 -9.48924 -9.47527 -9.41986 -9.37459 -8.68729 -8.60104 -8.31618 -6.95060 -5.95747 -3.34212 1.57051 2.31290 2.33010 3.32876 3.49389 3.51903 3.76772 3.79667 4.36488 4.42705 4.52998 4.73692 4.84792 4.88658 4.91588 5.00825 5.12647 5.17216 5.21861 5.26022 5.40490 5.46310 5.50661 5.56010 5.56407 5.59732 5.67809 5.77542 5.83412 5.93737 6.01590 6.11629 6.13095 6.14885 6.20162 6.32312 6.35802 6.41904 6.50349 6.51894 6.57060 6.74235 6.79845 6.82140 6.91891 6.99769 7.14977 7.59581 7.95855 8.14759 8.32819 8.75932 8.92659 9.71677 10.09242 11.19385 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003621 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.420932 B = 7731.199269 C = 8595.425984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.062 4.062 4 C 0.152 3.848 5 C -0.289 4.289 6 C 0.592 3.408 7 O -0.563 6.563 8 N -0.699 5.699 9 C 0.137 3.863 10 H 0.080 0.920 11 C -0.121 4.121 12 C -0.132 4.132 13 C 0.125 3.875 14 N -0.602 5.602 15 C -0.263 4.263 16 H 0.093 0.907 17 C 0.028 3.972 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.290 1.290 21 H -0.306 1.306 22 H -0.271 1.271 23 C 0.163 3.837 24 H 0.043 0.957 25 C -0.136 4.136 26 C 0.089 3.911 27 N -0.300 5.300 28 N -0.367 5.367 29 C 0.097 3.903 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.024 0.976 43 H 0.072 0.928 44 H 0.262 0.738 45 H 0.058 0.942 46 H 0.041 0.959 47 H 0.066 0.934 48 H 0.194 0.806 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.838 -0.831 -11.970 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.101 4.101 4 C 0.020 3.980 5 C -0.303 4.303 6 C 0.379 3.621 7 O -0.444 6.444 8 N -0.349 5.349 9 C 0.030 3.970 10 H 0.098 0.902 11 C -0.160 4.160 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.327 5.327 15 C -0.391 4.391 16 H 0.110 0.890 17 C -0.172 4.172 18 N -0.550 5.550 19 Si 0.713 3.287 20 H -0.217 1.217 21 H -0.234 1.234 22 H -0.196 1.196 23 C 0.056 3.944 24 H 0.061 0.939 25 C -0.193 4.193 26 C -0.099 4.099 27 N -0.119 5.119 28 N -0.146 5.146 29 C -0.044 4.044 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.246 0.754 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.085 0.915 48 H 0.211 0.789 49 H 0.095 0.905 50 H 0.111 0.889 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.770 -0.827 -12.994 21.231 hybrid contribution 0.323 -0.762 1.479 1.695 sum -16.447 -1.590 -11.514 20.140 Atomic orbital electron populations 1.21732 0.95131 1.01763 1.01973 1.21383 0.96112 0.95124 1.02369 1.20511 0.85953 0.98993 1.04652 1.21465 0.94410 0.95747 0.86358 1.20108 0.92722 1.23622 0.93880 1.17173 0.85540 0.75730 0.83618 1.90668 1.16571 1.52714 1.84399 1.45762 1.10229 1.73533 1.05403 1.21454 0.98251 0.96374 0.80876 0.90189 1.21788 0.97681 0.95900 1.00623 1.21952 0.96108 0.97639 1.01463 1.21348 0.97427 0.85657 0.95562 1.44479 1.04863 1.02327 1.81038 1.18904 0.80749 1.16267 1.23150 0.88989 1.25306 0.95099 0.98673 0.98081 1.69807 0.98809 1.46534 1.39874 0.86974 0.76245 0.79950 0.85538 1.21745 1.23431 1.19612 1.20749 0.87351 0.90631 0.95655 0.93935 1.21789 1.00327 0.95196 1.02021 1.24213 0.97663 0.96172 0.91861 1.77222 0.95584 1.25588 1.13484 1.48335 1.04265 1.55929 1.06118 1.21903 1.01133 1.03580 0.77769 0.92041 0.92988 0.92632 0.92778 0.90845 0.86946 0.91145 0.75433 0.92459 0.91951 0.91793 0.93106 0.95843 0.91014 0.92806 0.92313 0.93997 0.91543 0.78932 0.90505 0.88948 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.15 0.37 -0.84 16 2 C -0.11 -1.10 5.92 -26.74 -0.16 -1.26 16 3 C -0.06 -0.66 4.67 -27.88 -0.13 -0.79 16 4 C 0.15 1.99 6.26 -81.60 -0.51 1.48 16 5 C -0.29 -4.38 6.13 -105.06 -0.64 -5.02 16 6 C 0.59 9.76 7.78 -12.52 -0.10 9.66 16 7 O -0.56 -10.05 14.50 5.27 0.08 -9.97 16 8 N -0.70 -11.53 3.46 -54.74 -0.19 -11.72 16 9 C 0.14 2.29 2.33 -67.78 -0.16 2.13 16 10 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 11 C -0.12 -1.98 5.58 -26.66 -0.15 -2.13 16 12 C -0.13 -2.33 5.93 -26.61 -0.16 -2.49 16 13 C 0.13 2.61 4.20 -3.71 -0.02 2.59 16 14 N -0.60 -13.05 2.41 -164.78 -0.40 -13.45 16 15 C -0.26 -6.66 9.04 -15.06 -0.14 -6.80 16 16 H 0.09 2.45 6.40 -52.48 -0.34 2.11 16 17 C 0.03 0.76 5.24 -17.43 -0.09 0.67 16 18 N -0.91 -26.62 13.97 55.49 0.78 -25.84 16 19 Si 0.88 21.79 24.34 -169.99 -4.14 17.66 16 20 H -0.29 -6.99 6.62 56.52 0.37 -6.61 16 21 H -0.31 -7.81 7.11 56.52 0.40 -7.41 16 22 H -0.27 -6.61 6.63 56.52 0.37 -6.24 16 23 C 0.16 3.00 3.19 -67.60 -0.22 2.79 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 25 C -0.14 -2.39 7.74 37.16 0.29 -2.10 16 26 C 0.09 1.33 11.50 -16.98 -0.20 1.14 16 27 N -0.30 -4.49 12.50 30.86 0.39 -4.10 16 28 N -0.37 -4.52 3.98 -63.34 -0.25 -4.77 16 29 C 0.10 0.72 11.06 59.85 0.66 1.38 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.11 1.40 6.50 -51.93 -0.34 1.07 16 36 H 0.07 0.56 7.70 -51.93 -0.40 0.16 16 37 H 0.41 7.07 6.73 -40.82 -0.27 6.80 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.49 7.03 -51.93 -0.37 0.13 16 43 H 0.07 1.65 4.62 -51.93 -0.24 1.41 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.06 1.06 6.41 -51.93 -0.33 0.73 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 1.27 7.62 -51.93 -0.40 0.87 16 48 H 0.19 2.73 7.50 -52.49 -0.39 2.34 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.09 0.45 7.62 -51.93 -0.40 0.06 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -31.16 391.25 -7.70 -38.87 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.52 Total: 7.02 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.34 Total: 0.42 kcal Atomic # 7 Polarization: -60.21 SS G_CDS: 0.32 Total: -59.89 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.16 -7.70 -38.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993538526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.726 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds