Wall clock time and date at job start Tue Mar 31 2020 19:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47093 * 2 1 4 4 C 1.50708 * 109.47292 * 179.97438 * 3 2 1 5 5 C 1.38046 * 126.29081 * 270.00407 * 4 3 2 6 6 C 1.47431 * 126.41632 * 359.95245 * 5 4 3 7 7 O 1.21608 * 119.99816 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99991 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99895 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.49746 * 325.06148 * 9 8 6 11 11 C 1.53099 * 109.51592 * 85.12980 * 9 8 6 12 12 C 1.53040 * 109.50223 * 58.62861 * 11 9 8 13 13 C 1.53192 * 109.33836 * 61.34998 * 12 11 9 14 14 N 1.46928 * 108.77765 * 305.34788 * 13 12 11 15 15 C 1.36934 * 120.63076 * 233.59106 * 14 13 12 16 16 H 1.08004 * 119.99740 * 150.88992 * 15 14 13 17 17 C 1.38805 * 120.00058 * 330.88354 * 15 14 13 18 18 N 1.31618 * 120.00363 * 160.74510 * 17 15 14 19 19 Si 1.86808 * 120.00201 * 340.74564 * 17 15 14 20 20 H 1.48497 * 109.46971 * 92.29804 * 19 17 15 21 21 H 1.48500 * 109.47031 * 212.30323 * 19 17 15 22 22 H 1.48504 * 109.46985 * 332.30151 * 19 17 15 23 23 C 1.46928 * 118.73362 * 53.60420 * 14 13 12 24 24 H 1.09001 * 109.58274 * 66.18914 * 23 14 13 25 25 C 1.52999 * 109.58220 * 186.46201 * 23 14 13 26 26 C 1.41289 * 107.16849 * 180.22031 * 5 4 3 27 27 N 1.30448 * 108.02226 * 359.58448 * 26 5 4 28 28 N 1.34255 * 126.29149 * 89.97346 * 4 3 2 29 29 C 1.46499 * 125.75339 * 0.02562 * 28 4 3 30 30 H 1.09001 * 109.47324 * 299.99715 * 1 2 3 31 31 H 1.08996 * 109.47740 * 60.00091 * 1 2 3 32 32 H 1.09008 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47130 * 239.99773 * 2 1 3 34 34 H 1.09001 * 109.47475 * 120.00291 * 2 1 3 35 35 H 1.08999 * 109.47414 * 60.00397 * 3 2 1 36 36 H 1.08996 * 109.47326 * 300.00010 * 3 2 1 37 37 H 0.96996 * 120.00046 * 0.02562 * 8 6 5 38 38 H 1.08997 * 109.50637 * 298.60694 * 11 9 8 39 39 H 1.09001 * 109.45525 * 178.62506 * 11 9 8 40 40 H 1.08999 * 109.49917 * 301.38051 * 12 11 9 41 41 H 1.08998 * 109.49844 * 181.31152 * 12 11 9 42 42 H 1.09002 * 109.58917 * 65.13600 * 13 12 11 43 43 H 1.08997 * 109.58848 * 185.42039 * 13 12 11 44 44 H 0.97002 * 120.00317 * 179.97438 * 18 17 15 45 45 H 1.09004 * 109.46943 * 60.00636 * 25 23 14 46 46 H 1.09001 * 109.47459 * 180.02562 * 25 23 14 47 47 H 1.09000 * 109.47529 * 300.00316 * 25 23 14 48 48 H 1.08002 * 125.98529 * 179.73900 * 26 5 4 49 49 H 1.09001 * 109.47267 * 89.99671 * 29 28 4 50 50 H 1.09002 * 109.47446 * 209.99990 * 29 28 4 51 51 H 1.09005 * 109.47285 * 329.99840 * 29 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3636 1.4426 1.1137 6 6 3.9247 1.4437 2.5211 7 8 2.7383 1.4441 2.7881 8 7 4.8384 1.4442 3.5119 9 6 4.4023 1.4459 4.9105 10 1 3.4902 2.0349 5.0064 11 6 4.1324 0.0086 5.3637 12 6 5.4041 -0.8266 5.1985 13 6 6.5130 -0.2418 6.0789 14 7 6.6787 1.1803 5.7485 15 6 7.9083 1.6795 5.4110 16 1 7.9829 2.5271 4.7458 17 6 9.0587 1.0963 5.9240 18 7 10.2186 1.3011 5.3365 19 14 8.9609 0.0207 7.4482 20 1 8.7804 -1.3965 7.0432 21 1 10.2157 0.1560 8.2308 22 1 7.8089 0.4478 8.2823 23 6 5.4999 2.0565 5.7875 24 1 5.1423 2.1423 6.8136 25 6 5.8731 3.4421 5.2569 26 6 5.6987 1.4478 0.6514 27 7 5.6742 1.4416 -0.6528 28 7 4.3421 1.4419 -1.0811 29 6 3.8911 1.4415 -2.4750 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 5.7847 1.4442 3.2989 38 1 3.3348 -0.4205 4.7572 39 1 3.8315 0.0088 6.4114 40 1 5.7193 -0.8070 4.1553 41 1 5.2054 -1.8552 5.4993 42 1 6.2380 -0.3433 7.1288 43 1 7.4461 -0.7734 5.8926 44 1 11.0226 0.8939 5.6952 45 1 6.2257 3.3547 4.2292 46 1 4.9976 4.0907 5.2870 47 1 6.6620 3.8682 5.8767 48 1 6.5843 1.4532 1.2696 49 1 3.7795 2.4691 -2.8210 50 1 4.6258 0.9273 -3.0945 51 1 2.9323 0.9280 -2.5465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993538526.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:35 Heat of formation + Delta-G solvation = 30.880535 kcal Electronic energy + Delta-G solvation = -30746.994419 eV Core-core repulsion = 26875.431522 eV Total energy + Delta-G solvation = -3871.562897 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.51352 -40.83221 -39.00036 -36.27492 -35.47580 -34.36069 -34.02155 -33.40812 -31.93448 -31.32891 -28.45540 -27.61796 -27.38831 -26.62866 -24.45399 -23.52746 -22.65571 -22.34142 -21.65701 -20.54136 -20.20809 -18.62946 -18.32180 -17.26160 -16.93506 -16.73059 -16.69241 -15.94926 -15.87004 -15.70038 -15.56059 -15.20885 -15.03570 -14.73978 -14.57050 -14.30145 -14.23711 -13.99116 -13.80493 -13.52660 -13.49774 -13.32332 -13.15515 -13.08387 -12.68817 -12.47907 -12.41838 -12.23701 -12.16048 -12.09569 -11.91392 -11.88493 -11.57390 -11.51098 -11.33575 -11.16179 -10.71241 -10.58648 -10.37868 -9.92500 -9.51362 -8.81350 -8.06465 -5.39295 0.53236 1.14693 1.34772 1.43853 1.46420 1.53486 2.49073 2.50193 2.55713 3.13969 3.33407 3.48265 3.54255 3.91017 3.95344 4.06137 4.10528 4.13161 4.15710 4.22051 4.29520 4.38886 4.42990 4.51490 4.54698 4.61039 4.62057 4.64818 4.66115 4.80822 4.87592 4.90341 4.94710 4.97040 5.01740 5.05633 5.11177 5.21029 5.25094 5.32274 5.35741 5.39256 5.42884 5.44684 5.51257 5.78252 5.93190 5.98329 6.26755 6.51319 6.81252 6.99585 7.45218 7.71914 8.12351 9.12299 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015600 B = 0.003621 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.420932 B = 7731.199269 C = 8595.425984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.057 4.057 4 C 0.161 3.839 5 C -0.317 4.317 6 C 0.594 3.406 7 O -0.578 6.578 8 N -0.700 5.700 9 C 0.143 3.857 10 H 0.088 0.912 11 C -0.115 4.115 12 C -0.123 4.123 13 C 0.121 3.879 14 N -0.610 5.610 15 C -0.230 4.230 16 H 0.073 0.927 17 C -0.031 4.031 18 N -0.956 5.956 19 Si 0.935 3.065 20 H -0.282 1.282 21 H -0.321 1.321 22 H -0.262 1.262 23 C 0.161 3.839 24 H 0.055 0.945 25 C -0.129 4.129 26 C 0.079 3.921 27 N -0.323 5.323 28 N -0.359 5.359 29 C 0.083 3.917 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.403 0.597 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.048 0.952 44 H 0.257 0.743 45 H 0.047 0.953 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.189 0.811 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.055 -1.284 -13.008 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.096 4.096 4 C 0.027 3.973 5 C -0.332 4.332 6 C 0.383 3.617 7 O -0.460 6.460 8 N -0.350 5.350 9 C 0.037 3.963 10 H 0.106 0.894 11 C -0.153 4.153 12 C -0.162 4.162 13 C -0.004 4.004 14 N -0.336 5.336 15 C -0.360 4.360 16 H 0.090 0.910 17 C -0.225 4.225 18 N -0.603 5.603 19 Si 0.766 3.234 20 H -0.209 1.209 21 H -0.251 1.251 22 H -0.187 1.187 23 C 0.055 3.945 24 H 0.072 0.928 25 C -0.187 4.187 26 C -0.108 4.108 27 N -0.143 5.143 28 N -0.138 5.138 29 C -0.056 4.056 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.123 0.877 37 H 0.239 0.761 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.206 0.794 49 H 0.114 0.886 50 H 0.117 0.883 51 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.041 -1.289 -14.040 24.503 hybrid contribution 1.209 -0.562 1.661 2.130 sum -18.832 -1.851 -12.379 22.612 Atomic orbital electron populations 1.21704 0.93625 1.02353 1.02504 1.21333 0.97328 0.94281 1.01559 1.20572 0.83994 0.99660 1.05394 1.21837 0.95518 0.94010 0.85964 1.20138 0.93207 1.25974 0.93892 1.17315 0.85200 0.75122 0.84085 1.90652 1.17000 1.53602 1.84731 1.45763 1.09920 1.73769 1.05509 1.21363 0.97522 0.96823 0.80618 0.89430 1.21746 0.96863 0.95038 1.01661 1.21831 0.95473 0.98914 0.99968 1.21375 0.97544 0.84865 0.96570 1.44575 1.04540 1.03466 1.80989 1.18873 0.82085 1.14295 1.20726 0.90956 1.25814 0.95053 1.01035 1.00608 1.69928 0.99451 1.49305 1.41609 0.86101 0.75515 0.79123 0.82661 1.20943 1.25073 1.18668 1.20932 0.86450 0.90405 0.96711 0.92767 1.21711 1.00809 0.95326 1.00825 1.24183 0.97768 0.96669 0.92160 1.77148 0.97544 1.26286 1.13312 1.48708 1.03170 1.54208 1.07700 1.22393 1.02636 1.05436 0.75134 0.93149 0.90803 0.92061 0.91310 0.93940 0.88845 0.87682 0.76084 0.92134 0.90335 0.92984 0.90945 0.95111 0.93356 0.93407 0.93380 0.91308 0.93446 0.79448 0.88607 0.88252 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.91 71.98 0.71 -1.24 16 2 C -0.11 -1.86 5.92 30.59 0.18 -1.68 16 3 C -0.06 -1.07 4.67 29.85 0.14 -0.93 16 4 C 0.16 3.97 6.26 42.15 0.26 4.23 16 5 C -0.32 -9.59 6.13 -20.15 -0.12 -9.71 16 6 C 0.59 19.40 7.78 86.67 0.67 20.07 16 7 O -0.58 -20.18 14.50 -4.05 -0.06 -20.24 16 8 N -0.70 -22.90 3.46 -445.34 -1.54 -24.44 16 9 C 0.14 4.55 2.33 45.09 0.10 4.66 16 10 H 0.09 2.72 7.58 -2.39 -0.02 2.70 16 11 C -0.11 -3.47 5.58 30.64 0.17 -3.30 16 12 C -0.12 -4.11 5.93 30.67 0.18 -3.93 16 13 C 0.12 4.89 4.20 86.36 0.36 5.25 16 14 N -0.61 -26.14 2.41 -675.23 -1.62 -27.76 16 15 C -0.23 -11.88 9.04 84.03 0.76 -11.12 16 16 H 0.07 3.98 6.40 -2.91 -0.02 3.97 16 17 C -0.03 -1.71 5.24 84.86 0.44 -1.26 16 18 N -0.96 -58.15 13.97 21.65 0.30 -57.85 16 19 Si 0.93 45.66 24.34 68.60 1.67 47.33 16 20 H -0.28 -13.26 6.62 99.48 0.66 -12.60 16 21 H -0.32 -16.35 7.11 99.48 0.71 -15.64 16 22 H -0.26 -12.23 6.63 99.48 0.66 -11.57 16 23 C 0.16 5.71 3.19 44.97 0.14 5.85 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 C -0.13 -4.48 7.74 71.98 0.56 -3.92 16 26 C 0.08 2.43 11.50 85.65 0.99 3.42 16 27 N -0.32 -9.57 12.50 -56.27 -0.70 -10.28 16 28 N -0.36 -8.19 3.98 -354.29 -1.41 -9.60 16 29 C 0.08 0.96 11.06 127.77 1.41 2.37 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 2.19 6.50 -2.39 -0.02 2.18 16 36 H 0.10 1.24 7.70 -2.39 -0.02 1.22 16 37 H 0.40 14.22 6.73 -92.71 -0.62 13.60 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.05 1.87 7.53 -2.39 -0.02 1.85 16 41 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.03 1.22 7.03 -2.39 -0.02 1.20 16 43 H 0.05 2.19 4.62 -2.39 -0.01 2.18 16 44 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 45 H 0.05 1.75 6.41 -2.39 -0.02 1.74 16 46 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.80 7.62 -2.39 -0.02 1.79 16 48 H 0.19 5.68 7.50 -2.91 -0.02 5.66 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.12 0.68 7.62 -2.38 -0.02 0.66 16 Total: -1.00 -68.73 391.25 3.82 -64.91 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: 0.21 Total: 29.15 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 6.97 Total: 8.77 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -4.98 Total: -129.92 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.06 Total: -20.24 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.67 Total: 47.33 kcal Total: -68.73 3.82 -64.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993538526.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.792 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds