Wall clock time and date at job start Tue Mar 31 2020 20:06:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53005 * 109.47241 * 2 1
4 4 C 1.50698 * 109.47093 * 119.99975 * 2 1 3
5 5 N 1.30500 * 125.65247 * 300.17637 * 4 2 1
6 6 C 1.34126 * 109.25738 * 180.28875 * 5 4 2
7 7 C 1.34676 * 108.01979 * 359.72843 * 6 5 4
8 8 N 1.35051 * 125.64853 * 119.99888 * 4 2 1
9 9 C 1.46499 * 126.39777 * 359.97438 * 8 4 2
10 10 C 1.50700 * 109.47257 * 84.71082 * 9 8 4
11 11 O 1.21283 * 119.99803 * 359.97438 * 10 9 8
12 12 N 1.34777 * 119.99675 * 180.27849 * 10 9 8
13 13 C 1.47423 * 125.64829 * 359.41380 * 12 10 9
14 14 C 1.55137 * 104.71983 * 155.82193 * 13 12 10
15 15 H 1.08997 * 110.93557 * 155.28921 * 14 13 12
16 16 N 1.46496 * 111.18936 * 279.19142 * 14 13 12
17 17 C 1.36935 * 119.99787 * 267.18819 * 16 14 13
18 18 H 1.07997 * 120.00229 * 359.97438 * 17 16 14
19 19 C 1.38817 * 119.99709 * 180.02562 * 17 16 14
20 20 N 1.31616 * 120.00074 * 359.97438 * 19 17 16
21 21 Si 1.86804 * 119.99763 * 179.97438 * 19 17 16
22 22 H 1.48503 * 109.47171 * 359.97438 * 21 19 17
23 23 H 1.48501 * 109.46831 * 119.99461 * 21 19 17
24 24 H 1.48496 * 109.47301 * 239.99681 * 21 19 17
25 25 C 1.55161 * 101.48526 * 37.29517 * 14 13 12
26 26 C 1.53001 * 110.71686 * 205.97012 * 25 14 13
27 27 C 1.52995 * 110.72172 * 82.69545 * 25 14 13
28 28 C 1.47019 * 125.64379 * 179.72980 * 12 10 9
29 29 H 1.09004 * 109.47256 * 300.00331 * 1 2 3
30 30 H 1.08999 * 109.46755 * 59.99652 * 1 2 3
31 31 H 1.08996 * 109.47318 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47279 * 240.00376 * 2 1 3
33 33 H 1.08997 * 109.47033 * 179.97438 * 3 2 1
34 34 H 1.08996 * 109.47428 * 300.00393 * 3 2 1
35 35 H 1.09004 * 109.47048 * 60.00182 * 3 2 1
36 36 H 1.07998 * 125.99171 * 179.72745 * 6 5 4
37 37 H 1.08001 * 126.58672 * 179.97438 * 7 6 5
38 38 H 1.09009 * 109.46700 * 324.70976 * 9 8 4
39 39 H 1.08998 * 109.46827 * 204.71551 * 9 8 4
40 40 H 1.09007 * 110.36652 * 274.74673 * 13 12 10
41 41 H 1.08993 * 110.36828 * 37.07553 * 13 12 10
42 42 H 0.97003 * 119.99795 * 87.18767 * 16 14 13
43 43 H 0.97000 * 119.99803 * 180.02562 * 20 19 17
44 44 H 1.09008 * 109.46770 * 174.97513 * 26 25 14
45 45 H 1.08998 * 109.47310 * 294.97401 * 26 25 14
46 46 H 1.08994 * 109.47126 * 54.97785 * 26 25 14
47 47 H 1.09000 * 109.47519 * 305.02571 * 27 25 14
48 48 H 1.09005 * 109.47297 * 65.02469 * 27 25 14
49 49 H 1.09002 * 109.47296 * 185.01981 * 27 25 14
50 50 H 1.09003 * 109.88210 * 300.43359 * 28 12 10
51 51 H 1.08999 * 109.89027 * 61.44819 * 28 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0323 -0.7104 1.2304
5 7 1.7833 -0.3639 2.4637
6 6 2.3968 -1.2185 3.2958
7 6 3.0459 -2.1327 2.5497
8 7 2.8120 -1.8131 1.2395
9 6 3.3180 -2.5296 0.0662
10 6 4.5860 -1.8729 -0.4153
11 8 5.0238 -0.9016 0.1644
12 7 5.2303 -2.3613 -1.4936
13 6 4.8143 -3.5333 -2.2852
14 6 5.4515 -3.3117 -3.6823
15 1 5.5906 -4.2598 -4.2017
16 7 4.6511 -2.3868 -4.4886
17 6 3.6927 -2.8721 -5.3377
18 1 3.5270 -3.9366 -5.4133
19 6 2.9347 -1.9957 -6.1022
20 7 3.1369 -0.6984 -6.0104
21 14 1.6276 -2.6577 -7.2611
22 1 1.5990 -4.1402 -7.1798
23 1 0.3011 -2.1145 -6.8731
24 1 1.9441 -2.2447 -8.6519
25 6 6.8168 -2.6801 -3.3025
26 6 7.3455 -1.8076 -4.4427
27 6 7.8311 -3.7645 -2.9336
28 6 6.4680 -1.8173 -2.0713
29 1 -0.3634 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 1.8933 -0.5138 -0.8900
33 1 3.1300 1.4425 0.0005
34 1 1.6767 1.9564 -0.8899
35 1 1.6767 1.9564 0.8900
36 1 2.3742 -1.1802 4.3748
37 1 3.6377 -2.9590 2.9151
38 1 2.5705 -2.5016 -0.7268
39 1 3.5245 -3.5657 0.3344
40 1 5.1937 -4.4501 -1.8338
41 1 3.7280 -3.5705 -2.3658
42 1 4.8002 -1.4307 -4.4209
43 1 2.6069 -0.0860 -6.5443
44 1 8.2578 -1.3044 -4.1222
45 1 7.5607 -2.4331 -5.3091
46 1 6.5947 -1.0638 -4.7092
47 1 7.4206 -4.3921 -2.1425
48 1 8.0431 -4.3769 -3.8100
49 1 8.7523 -3.2972 -2.5855
50 1 6.3112 -0.7826 -2.3762
51 1 7.2735 -1.8698 -1.3388
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000996373084.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:06:22
Heat of formation + Delta-G solvation = 17.828507 kcal
Electronic energy + Delta-G solvation = -30683.008791 eV
Core-core repulsion = 26810.879916 eV
Total energy + Delta-G solvation = -3872.128875 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-43.19061 -41.31271 -39.34837 -36.34333 -35.70158 -35.11189 -34.55053 -32.56685
-29.98652 -29.53257 -29.35545 -28.13125 -27.96560 -26.74978 -25.63159 -23.87194
-23.16293 -22.29519 -20.99228 -20.27045 -19.76107 -19.06998 -18.45369 -17.97339
-17.23622 -16.93506 -16.38962 -16.03424 -15.76025 -15.55529 -15.33554 -15.26212
-14.96191 -14.71994 -14.53624 -14.36804 -14.25469 -13.90431 -13.64828 -13.54589
-13.44803 -13.23200 -13.08559 -12.99846 -12.83780 -12.77259 -12.62038 -12.47702
-12.21688 -12.09879 -12.01526 -11.97294 -11.84742 -11.47709 -11.43540 -11.26849
-10.95954 -10.93744 -10.50002 -9.73648 -9.28105 -8.94110 -7.90109 -5.18064
0.95616 1.40529 1.49977 1.52175 1.60112 1.62511 2.12037 2.19787
2.58674 3.27169 3.36310 3.41404 3.62034 3.65131 3.70330 3.85184
3.86553 3.98662 4.06867 4.07860 4.12659 4.29275 4.33455 4.46104
4.56431 4.60044 4.68572 4.71854 4.73228 4.76831 4.82938 4.86344
4.88766 4.89853 4.99593 5.00027 5.07702 5.13131 5.18780 5.24126
5.29174 5.31978 5.38036 5.42672 5.56591 5.62658 5.86742 6.11970
6.30408 6.44945 6.97446 7.14566 7.38444 8.12987 8.35042 9.33080
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.009660 B = 0.004424 C = 0.003404
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2897.748499 B = 6327.630388 C = 8223.680616
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.012 4.012
3 C -0.128 4.128
4 C 0.213 3.787
5 N -0.516 5.516
6 C -0.052 4.052
7 C -0.049 4.049
8 N -0.444 5.444
9 C 0.093 3.907
10 C 0.507 3.493
11 O -0.578 6.578
12 N -0.596 5.596
13 C 0.070 3.930
14 C 0.167 3.833
15 H 0.088 0.912
16 N -0.720 5.720
17 C -0.231 4.231
18 H 0.086 0.914
19 C -0.069 4.069
20 N -0.968 5.968
21 Si 0.961 3.039
22 H -0.261 1.261
23 H -0.301 1.301
24 H -0.302 1.302
25 C -0.077 4.077
26 C -0.122 4.122
27 C -0.124 4.124
28 C 0.124 3.876
29 H 0.064 0.936
30 H 0.073 0.927
31 H 0.057 0.943
32 H 0.067 0.933
33 H 0.030 0.970
34 H 0.072 0.928
35 H 0.065 0.935
36 H 0.190 0.810
37 H 0.206 0.794
38 H 0.126 0.874
39 H 0.161 0.839
40 H 0.104 0.896
41 H 0.074 0.926
42 H 0.372 0.628
43 H 0.247 0.753
44 H 0.063 0.937
45 H 0.059 0.941
46 H 0.033 0.967
47 H 0.068 0.932
48 H 0.069 0.931
49 H 0.066 0.934
50 H 0.034 0.966
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.952 -9.441 12.163 15.896
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.032 4.032
3 C -0.186 4.186
4 C -0.050 4.050
5 N -0.235 5.235
6 C -0.198 4.198
7 C -0.181 4.181
8 N -0.126 5.126
9 C -0.033 4.033
10 C 0.295 3.705
11 O -0.458 6.458
12 N -0.328 5.328
13 C -0.055 4.055
14 C 0.057 3.943
15 H 0.106 0.894
16 N -0.359 5.359
17 C -0.362 4.362
18 H 0.104 0.896
19 C -0.261 4.261
20 N -0.619 5.619
21 Si 0.792 3.208
22 H -0.185 1.185
23 H -0.229 1.229
24 H -0.230 1.230
25 C -0.079 4.079
26 C -0.180 4.180
27 C -0.182 4.182
28 C 0.001 3.999
29 H 0.083 0.917
30 H 0.091 0.909
31 H 0.076 0.924
32 H 0.086 0.914
33 H 0.049 0.951
34 H 0.091 0.909
35 H 0.084 0.916
36 H 0.207 0.793
37 H 0.223 0.777
38 H 0.143 0.857
39 H 0.179 0.821
40 H 0.122 0.878
41 H 0.092 0.908
42 H 0.205 0.795
43 H 0.056 0.944
44 H 0.082 0.918
45 H 0.078 0.922
46 H 0.052 0.948
47 H 0.087 0.913
48 H 0.088 0.912
49 H 0.085 0.915
50 H 0.053 0.947
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges 3.606 -8.472 12.555 15.570
hybrid contribution -0.157 0.104 -1.112 1.128
sum 3.449 -8.368 11.443 14.590
Atomic orbital electron populations
1.21697 0.91628 1.02400 1.02944 1.19558 0.97681 0.95658 0.90349
1.21641 0.99684 0.94586 1.02713 1.23280 0.97091 0.88981 0.95620
1.70120 1.25753 1.28055 0.99598 1.22714 1.01811 0.94741 1.00570
1.23191 1.07401 1.05581 0.81942 1.45054 1.37765 1.23019 1.06785
1.21798 0.94521 0.98441 0.88541 1.20725 0.85886 0.84033 0.79902
1.90734 1.68561 1.28370 1.58123 1.48355 1.25905 1.31169 1.27399
1.23549 1.01093 0.87483 0.93353 1.21693 0.88962 0.94092 0.89603
0.89407 1.42550 1.41007 1.05171 1.47149 1.19675 1.09635 0.92586
1.14338 0.89624 1.25407 1.02641 0.95463 1.02621 1.69824 1.44521
1.02058 1.45477 0.85256 0.78932 0.78267 0.78392 1.18459 1.22879
1.23034 1.21888 0.96374 0.96340 0.93268 1.21568 0.99900 0.99171
0.97362 1.21723 0.97300 0.96910 1.02247 1.21994 0.86085 0.96718
0.95089 0.91661 0.90850 0.92403 0.91439 0.95064 0.90909 0.91593
0.79254 0.77728 0.85650 0.82145 0.87798 0.90805 0.79519 0.94424
0.91807 0.92184 0.94825 0.91306 0.91151 0.91547 0.94736 0.90988
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.38 9.18 71.98 0.66 -2.72 16
2 C -0.01 -0.38 3.25 -11.54 -0.04 -0.41 16
3 C -0.13 -4.08 9.18 71.98 0.66 -3.42 16
4 C 0.21 6.86 6.39 138.12 0.88 7.75 16
5 N -0.52 -17.17 11.25 -188.13 -2.12 -19.29 16
6 C -0.05 -1.41 11.87 83.53 0.99 -0.42 16
7 C -0.05 -1.21 11.58 83.09 0.96 -0.25 16
8 N -0.44 -12.51 2.24 -518.32 -1.16 -13.67 16
9 C 0.09 2.24 5.17 85.63 0.44 2.68 16
10 C 0.51 15.96 7.92 87.66 0.69 16.66 16
11 O -0.58 -23.27 16.74 -3.04 -0.05 -23.32 16
12 N -0.60 -17.35 3.32 -811.33 -2.70 -20.04 16
13 C 0.07 1.76 6.09 86.94 0.53 2.29 16
14 C 0.17 5.10 2.96 46.47 0.14 5.24 16
15 H 0.09 2.52 7.99 -2.39 -0.02 2.50 16
16 N -0.72 -30.88 4.57 -316.00 -1.44 -32.32 16
17 C -0.23 -11.10 9.96 84.04 0.84 -10.26 16
18 H 0.09 3.84 7.83 -2.91 -0.02 3.82 16
19 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16
20 N -0.97 -56.07 13.06 21.65 0.28 -55.79 16
21 Si 0.96 42.95 29.55 68.60 2.03 44.98 16
22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16
23 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16
24 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16
25 C -0.08 -2.03 0.80 -50.99 -0.04 -2.07 16
26 C -0.12 -3.62 8.16 71.98 0.59 -3.03 16
27 C -0.12 -2.29 8.44 71.98 0.61 -1.68 16
28 C 0.12 3.70 6.03 86.73 0.52 4.22 16
29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16
31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
32 H 0.07 2.23 6.85 -2.39 -0.02 2.22 16
33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16
34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
35 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16
36 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16
37 H 0.21 3.28 8.06 -2.91 -0.02 3.26 16
38 H 0.13 3.00 7.01 -2.38 -0.02 2.99 16
39 H 0.16 2.44 8.14 -2.39 -0.02 2.42 16
40 H 0.10 1.80 7.70 -2.38 -0.02 1.78 16
41 H 0.07 2.00 7.47 -2.39 -0.02 1.98 16
42 H 0.37 18.33 6.32 -92.71 -0.59 17.75 16
43 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16
44 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16
45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
46 H 0.03 1.26 6.34 -2.39 -0.02 1.24 16
47 H 0.07 1.09 7.42 -2.39 -0.02 1.07 16
48 H 0.07 1.19 8.14 -2.38 -0.02 1.18 16
49 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
50 H 0.03 1.25 7.82 -2.39 -0.02 1.23 16
51 H 0.07 1.98 7.85 -2.39 -0.02 1.96 16
Total: -1.00 -71.21 409.11 4.06 -67.15
By element:
Atomic # 1 Polarization: 40.56 SS G_CDS: 0.32 Total: 40.88 kcal
Atomic # 6 Polarization: 2.52 SS G_CDS: 8.90 Total: 11.43 kcal
Atomic # 7 Polarization: -133.98 SS G_CDS: -7.14 Total: -141.12 kcal
Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal
Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal
Total: -71.21 4.06 -67.15 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000996373084.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.976 kcal
(2) G-P(sol) polarization free energy of solvation -71.211 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.147 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.829 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds