Wall clock time and date at job start Tue Mar 31 2020 20:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 C 1.50700 * 109.46821 * 120.00155 * 2 1 3 5 5 N 1.30499 * 125.65164 * 299.99676 * 4 2 1 6 6 C 1.34128 * 109.26095 * 180.02562 * 5 4 2 7 7 C 1.34675 * 108.01655 * 0.02562 * 6 5 4 8 8 N 1.35046 * 125.65379 * 119.99857 * 4 2 1 9 9 C 1.46504 * 126.39446 * 0.02562 * 8 4 2 10 10 C 1.50701 * 109.47403 * 85.02227 * 9 8 4 11 11 O 1.21282 * 119.99706 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00132 * 180.02562 * 10 9 8 13 13 C 1.47432 * 125.64828 * 359.69195 * 12 10 9 14 14 C 1.55132 * 104.72043 * 155.82084 * 13 12 10 15 15 H 1.09004 * 111.18729 * 279.18846 * 14 13 12 16 16 N 1.46494 * 110.90343 * 155.27463 * 14 13 12 17 17 C 1.36938 * 120.00226 * 92.97293 * 16 14 13 18 18 H 1.08002 * 119.99787 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00437 * 179.97438 * 17 16 14 20 20 N 1.31617 * 119.99479 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00142 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47147 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47193 * 119.99887 * 21 19 17 24 24 H 1.48505 * 109.46843 * 239.99840 * 21 19 17 25 25 C 1.55153 * 101.48571 * 37.29220 * 14 13 12 26 26 C 1.52998 * 110.71877 * 205.96651 * 25 14 13 27 27 C 1.53005 * 110.71910 * 82.70019 * 25 14 13 28 28 C 1.47019 * 125.64998 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.47142 * 300.00123 * 1 2 3 30 30 H 1.09001 * 109.46742 * 59.99699 * 1 2 3 31 31 H 1.08996 * 109.47629 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47142 * 239.99876 * 2 1 3 33 33 H 1.08997 * 109.46972 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.46929 * 300.00183 * 3 2 1 35 35 H 1.09002 * 109.47041 * 59.99815 * 3 2 1 36 36 H 1.08002 * 125.99298 * 180.26684 * 6 5 4 37 37 H 1.07999 * 126.58816 * 179.97438 * 7 6 5 38 38 H 1.08991 * 109.47045 * 205.02444 * 9 8 4 39 39 H 1.09003 * 109.46902 * 325.02049 * 9 8 4 40 40 H 1.08998 * 110.36028 * 274.74658 * 13 12 10 41 41 H 1.09001 * 110.36384 * 37.07092 * 13 12 10 42 42 H 0.97003 * 120.00229 * 272.97114 * 16 14 13 43 43 H 0.97007 * 119.99278 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.47269 * 174.97842 * 26 25 14 45 45 H 1.09004 * 109.47790 * 294.98157 * 26 25 14 46 46 H 1.08998 * 109.47200 * 54.98069 * 26 25 14 47 47 H 1.09003 * 109.47077 * 305.01856 * 27 25 14 48 48 H 1.08999 * 109.47417 * 65.02005 * 27 25 14 49 49 H 1.08994 * 109.47028 * 185.02433 * 27 25 14 50 50 H 1.08999 * 109.88342 * 300.44117 * 28 12 10 51 51 H 1.09007 * 109.88433 * 61.44735 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7859 -0.3621 2.4637 6 6 2.3937 -1.2207 3.2959 7 6 3.0417 -2.1357 2.5498 8 7 2.8119 -1.8131 1.2396 9 6 3.3188 -2.5291 0.0663 10 6 4.5914 -1.8768 -0.4092 11 8 5.0314 -0.9089 0.1743 12 7 5.2400 -2.3685 -1.4834 13 6 4.8217 -3.5369 -2.2793 14 6 5.4703 -3.3183 -3.6714 15 1 4.8837 -2.6255 -4.2749 16 7 5.6535 -4.5935 -4.3688 17 6 4.6884 -5.0498 -5.2264 18 1 3.7919 -4.4697 -5.3883 19 6 4.8622 -6.2579 -5.8876 20 7 5.9550 -6.9645 -5.6906 21 14 3.5459 -6.8800 -7.0579 22 1 2.4247 -5.9073 -7.1040 23 1 4.1244 -7.0339 -8.4168 24 1 3.0418 -8.1936 -6.5828 25 6 6.8371 -2.6962 -3.2813 26 6 7.3798 -1.8263 -4.4168 27 6 7.8414 -3.7880 -2.9064 28 6 6.4857 -1.8327 -2.0515 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 2.3648 -1.1868 4.3750 37 1 3.6293 -2.9650 2.9152 38 1 3.5199 -3.5666 0.3327 39 1 2.5743 -2.4960 -0.7292 40 1 5.1916 -4.4566 -1.8260 41 1 3.7357 -3.5665 -2.3675 42 1 6.4586 -5.1147 -4.2231 43 1 6.0766 -7.8086 -6.1529 44 1 8.2932 -1.3296 -4.0894 45 1 7.5969 -2.4524 -5.2823 46 1 6.6360 -1.0771 -4.6879 47 1 7.4210 -4.4135 -2.1189 48 1 8.0554 -4.4010 -3.7819 49 1 8.7631 -3.3273 -2.5512 50 1 6.3386 -0.7965 -2.3562 51 1 7.2854 -1.8917 -1.3132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996373085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:28 Heat of formation + Delta-G solvation = 18.129728 kcal Electronic energy + Delta-G solvation = -30071.636690 eV Core-core repulsion = 26199.520877 eV Total energy + Delta-G solvation = -3872.115813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.18942 -41.33900 -39.39141 -36.29716 -35.89588 -35.11680 -34.55176 -32.64481 -29.99633 -29.42888 -29.10336 -28.28668 -28.06066 -26.76164 -25.79239 -23.83900 -23.11845 -22.30400 -20.99345 -20.13942 -19.76674 -19.19626 -18.47695 -18.01952 -17.26632 -16.82018 -16.49465 -15.98761 -15.80660 -15.51346 -15.35606 -15.22440 -15.02795 -14.62553 -14.43202 -14.40855 -14.32011 -14.19249 -13.82738 -13.51752 -13.37648 -13.29850 -13.01985 -12.97091 -12.87584 -12.76210 -12.60245 -12.42520 -12.15158 -12.09269 -12.01495 -11.92118 -11.88583 -11.54621 -11.48254 -11.30766 -10.95623 -10.91000 -10.50682 -9.76934 -9.29192 -8.99846 -7.91917 -5.20202 0.95428 1.36426 1.51288 1.53790 1.59125 1.61549 2.05249 2.19760 2.59135 3.20841 3.38811 3.39650 3.60737 3.64211 3.72981 3.78310 3.86180 3.99352 4.10282 4.13062 4.18282 4.30056 4.32786 4.40560 4.43384 4.57488 4.64321 4.70980 4.77636 4.78604 4.81557 4.85111 4.88184 4.93158 4.97712 5.03711 5.05025 5.11405 5.19342 5.25348 5.28308 5.31680 5.39944 5.42200 5.49399 5.59156 5.84525 6.14231 6.29715 6.37963 6.92263 7.14441 7.38980 8.11197 8.35121 9.31062 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.003116 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.427350 B = 8982.761889 C = 9869.945542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 C -0.131 4.131 4 C 0.214 3.786 5 N -0.518 5.518 6 C -0.050 4.050 7 C -0.055 4.055 8 N -0.445 5.445 9 C 0.089 3.911 10 C 0.511 3.489 11 O -0.569 6.569 12 N -0.602 5.602 13 C 0.078 3.922 14 C 0.174 3.826 15 H 0.068 0.932 16 N -0.719 5.719 17 C -0.237 4.237 18 H 0.081 0.919 19 C -0.067 4.067 20 N -0.965 5.965 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.300 1.300 24 H -0.298 1.298 25 C -0.079 4.079 26 C -0.126 4.126 27 C -0.128 4.128 28 C 0.125 3.875 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.187 0.813 37 H 0.197 0.803 38 H 0.148 0.852 39 H 0.142 0.858 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.382 0.618 43 H 0.250 0.750 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.048 0.952 48 H 0.049 0.951 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 10.616 10.568 15.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 C -0.189 4.189 4 C -0.049 4.049 5 N -0.237 5.237 6 C -0.197 4.197 7 C -0.186 4.186 8 N -0.127 5.127 9 C -0.037 4.037 10 C 0.299 3.701 11 O -0.449 6.449 12 N -0.335 5.335 13 C -0.047 4.047 14 C 0.063 3.937 15 H 0.086 0.914 16 N -0.359 5.359 17 C -0.369 4.369 18 H 0.099 0.901 19 C -0.259 4.259 20 N -0.616 5.616 21 Si 0.793 3.207 22 H -0.188 1.188 23 H -0.228 1.228 24 H -0.225 1.225 25 C -0.080 4.080 26 C -0.183 4.183 27 C -0.186 4.186 28 C 0.002 3.998 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.204 0.796 37 H 0.214 0.786 38 H 0.165 0.835 39 H 0.160 0.840 40 H 0.087 0.913 41 H 0.105 0.895 42 H 0.217 0.783 43 H 0.058 0.942 44 H 0.089 0.911 45 H 0.067 0.933 46 H 0.079 0.921 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.259 11.716 10.963 16.885 hybrid contribution 0.593 -1.750 -0.735 1.988 sum -4.666 9.966 10.228 15.024 Atomic orbital electron populations 1.21732 0.91719 1.02366 1.03151 1.19671 0.97535 0.95747 0.90240 1.21682 0.99909 0.94325 1.02988 1.23565 0.96658 0.88639 0.96013 1.70126 1.25775 1.27966 0.99823 1.22655 1.01879 0.94654 1.00507 1.23121 1.07650 1.05456 0.82416 1.45038 1.37971 1.23205 1.06527 1.21844 0.94853 0.98095 0.88945 1.20685 0.86091 0.83916 0.79408 1.90752 1.68701 1.28517 1.56903 1.48427 1.25651 1.31210 1.28250 1.23403 1.01086 0.87073 0.93144 1.21529 0.93845 0.87888 0.90423 0.91431 1.42557 1.22308 1.20869 1.50186 1.19661 0.98909 1.01801 1.16540 0.90119 1.25412 0.99402 0.98433 1.02700 1.69796 1.28393 1.15578 1.47800 0.85229 0.79198 0.77896 0.78347 1.18834 1.22812 1.22523 1.21811 0.96168 0.95656 0.94410 1.21655 1.01244 0.98664 0.96752 1.21651 0.98340 0.97668 1.00931 1.22029 0.85780 0.97510 0.94436 0.92427 0.89818 0.92607 0.89835 0.94713 0.89769 0.92418 0.79643 0.78564 0.83455 0.84046 0.91333 0.89473 0.78299 0.94153 0.91064 0.93289 0.92078 0.93259 0.93209 0.91083 0.91146 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.18 71.98 0.66 -1.68 16 2 C -0.01 -0.25 3.25 -11.54 -0.04 -0.29 16 3 C -0.13 -2.89 9.18 71.98 0.66 -2.23 16 4 C 0.21 5.69 6.40 138.13 0.88 6.57 16 5 N -0.52 -15.22 11.25 -188.12 -2.12 -17.34 16 6 C -0.05 -1.28 11.87 83.52 0.99 -0.28 16 7 C -0.05 -1.25 11.58 83.09 0.96 -0.29 16 8 N -0.45 -10.80 2.24 -518.34 -1.16 -11.97 16 9 C 0.09 1.77 5.17 85.63 0.44 2.21 16 10 C 0.51 13.48 7.92 87.66 0.69 14.17 16 11 O -0.57 -19.54 16.75 -3.03 -0.05 -19.59 16 12 N -0.60 -15.30 3.32 -811.35 -2.70 -18.00 16 13 C 0.08 2.09 6.07 86.93 0.53 2.61 16 14 C 0.17 5.54 2.97 46.46 0.14 5.68 16 15 H 0.07 2.21 7.99 -2.38 -0.02 2.19 16 16 N -0.72 -30.27 5.15 -316.02 -1.63 -31.90 16 17 C -0.24 -11.40 9.96 84.03 0.84 -10.56 16 18 H 0.08 3.68 7.83 -2.91 -0.02 3.66 16 19 C -0.07 -3.45 5.50 84.86 0.47 -2.98 16 20 N -0.97 -54.05 13.06 21.65 0.28 -53.77 16 21 Si 0.96 42.26 29.55 68.60 2.03 44.29 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 25 C -0.08 -2.13 0.85 -51.00 -0.04 -2.17 16 26 C -0.13 -3.15 8.49 71.98 0.61 -2.54 16 27 C -0.13 -3.59 7.55 71.98 0.54 -3.05 16 28 C 0.13 3.19 6.04 86.73 0.52 3.71 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.08 1.65 6.85 -2.39 -0.02 1.63 16 33 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.19 3.64 8.06 -2.91 -0.02 3.62 16 37 H 0.20 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.15 2.22 8.13 -2.39 -0.02 2.20 16 39 H 0.14 2.23 6.99 -2.39 -0.02 2.22 16 40 H 0.07 1.95 7.69 -2.39 -0.02 1.93 16 41 H 0.09 2.05 7.48 -2.39 -0.02 2.03 16 42 H 0.38 17.50 5.45 -92.71 -0.51 17.00 16 43 H 0.25 13.76 8.31 -92.70 -0.77 12.98 16 44 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 47 H 0.05 1.42 7.42 -2.39 -0.02 1.40 16 48 H 0.05 1.64 6.75 -2.39 -0.02 1.63 16 49 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.07 1.77 7.82 -2.39 -0.02 1.75 16 51 H 0.07 1.70 7.85 -2.38 -0.02 1.68 16 Total: -1.00 -66.91 408.69 3.92 -62.99 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.40 Total: 36.39 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: 8.86 Total: 8.89 kcal Atomic # 7 Polarization: -125.65 SS G_CDS: -7.32 Total: -132.97 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.05 Total: -19.59 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -66.91 3.92 -62.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996373085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.118 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds