Wall clock time and date at job start Tue Mar 31 2020 19:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 C 1.50693 * 109.47390 * 120.00333 * 2 1 3 5 5 C 1.39673 * 126.07150 * 275.00250 * 4 2 1 6 6 C 1.38409 * 105.36207 * 179.97438 * 5 4 2 7 7 C 1.47163 * 126.88550 * 180.02562 * 6 5 4 8 8 O 1.21623 * 119.99870 * 172.12294 * 7 6 5 9 9 N 1.34778 * 119.99906 * 352.12092 * 7 6 5 10 10 C 1.48385 * 127.16816 * 353.23407 * 9 7 6 11 11 C 1.54943 * 103.37091 * 219.23473 * 10 9 7 12 12 H 1.08999 * 110.74508 * 204.38805 * 11 10 9 13 13 N 1.46505 * 110.89814 * 81.13669 * 11 10 9 14 14 C 1.36929 * 120.00210 * 91.49009 * 13 11 10 15 15 H 1.08003 * 119.99802 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00382 * 180.02562 * 14 13 11 17 17 N 1.31621 * 119.99994 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00382 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46909 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47162 * 119.99593 * 18 16 14 21 21 H 1.48497 * 109.47136 * 239.99522 * 18 16 14 22 22 C 1.54617 * 102.84089 * 322.72609 * 11 10 9 23 23 C 1.52997 * 110.33064 * 262.95853 * 22 11 10 24 24 C 1.52996 * 110.41796 * 140.78246 * 22 11 10 25 25 C 1.47476 * 127.03441 * 173.43851 * 9 7 6 26 26 N 1.36599 * 106.22775 * 0.25505 * 6 5 4 27 27 C 1.46501 * 125.18803 * 179.74198 * 26 6 5 28 28 N 1.28443 * 109.62070 * 359.55901 * 26 6 5 29 29 H 1.09007 * 109.46846 * 299.99442 * 1 2 3 30 30 H 1.09001 * 109.47327 * 59.99213 * 1 2 3 31 31 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46846 * 240.00558 * 2 1 3 33 33 H 1.09007 * 109.46812 * 60.00537 * 3 2 1 34 34 H 1.08998 * 109.47140 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47670 * 300.00577 * 3 2 1 36 36 H 1.07998 * 127.31721 * 359.97438 * 5 4 2 37 37 H 1.08995 * 110.52059 * 100.79572 * 10 9 7 38 38 H 1.09000 * 110.83894 * 337.81717 * 10 9 7 39 39 H 0.97006 * 119.99881 * 271.49762 * 13 11 10 40 40 H 0.97000 * 120.00171 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47565 * 177.06740 * 23 22 11 42 42 H 1.09004 * 109.47182 * 297.07665 * 23 22 11 43 43 H 1.09008 * 109.46725 * 57.06797 * 23 22 11 44 44 H 1.08997 * 109.47466 * 302.87974 * 24 22 11 45 45 H 1.09006 * 109.46774 * 62.87923 * 24 22 11 46 46 H 1.08999 * 109.47604 * 182.87652 * 24 22 11 47 47 H 1.09007 * 109.91408 * 35.15246 * 25 9 7 48 48 H 1.08998 * 109.91414 * 274.07351 * 25 9 7 49 49 H 1.08993 * 109.47277 * 84.53276 * 27 26 6 50 50 H 1.09008 * 109.47266 * 204.53501 * 27 26 6 51 51 H 1.09004 * 109.47209 * 324.53307 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 6 2.2137 -0.1406 2.4926 6 6 2.6850 -1.1662 3.2936 7 6 3.0336 -1.0833 4.7209 8 8 3.3008 -2.0946 5.3414 9 7 3.0569 0.1134 5.3405 10 6 2.8973 1.4497 4.7155 11 6 3.9221 2.3267 5.4780 12 1 3.6340 3.3773 5.4415 13 7 5.2716 2.1420 4.9386 14 6 5.7276 2.9601 3.9397 15 1 5.0925 3.7418 3.5498 16 6 7.0061 2.7848 3.4282 17 7 7.7803 1.8325 3.9037 18 14 7.6284 3.9013 2.0661 19 1 6.5733 4.8842 1.7109 20 1 8.8404 4.6221 2.5317 21 1 7.9660 3.0850 0.8724 22 6 3.8310 1.7839 6.9229 23 6 2.8967 2.6584 7.7614 24 6 5.2205 1.7286 7.5609 25 6 3.2508 0.3644 6.7807 26 7 2.7665 -2.2696 2.4925 27 6 3.2258 -3.5928 2.9221 28 7 2.3755 -1.9710 1.3060 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.0260 0.8828 2.7820 37 1 1.8844 1.8233 4.8657 38 1 3.1385 1.4123 3.6532 39 1 5.8422 1.4400 5.2890 40 1 8.6738 1.7102 3.5466 41 1 2.8017 2.2344 8.7610 42 1 3.3073 3.6657 7.8314 43 1 1.9151 2.6983 7.2889 44 1 5.8779 1.1128 6.9472 45 1 5.6284 2.7370 7.6312 46 1 5.1452 1.2967 8.5589 47 1 3.9478 -0.3647 7.1941 48 1 2.2950 0.3002 7.3007 49 1 2.3947 -4.1386 3.3686 50 1 3.6017 -4.1445 2.0603 51 1 4.0229 -3.4798 3.6570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996474224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:27 Heat of formation + Delta-G solvation = 61.415518 kcal Electronic energy + Delta-G solvation = -30979.555910 eV Core-core repulsion = 27109.317109 eV Total energy + Delta-G solvation = -3870.238801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36638 -39.79862 -37.80799 -35.83436 -34.00650 -33.44798 -32.12762 -30.85204 -30.62007 -28.07590 -27.13892 -26.75831 -26.55684 -26.17446 -24.06837 -22.97656 -22.11139 -21.24781 -20.17018 -18.87048 -18.37600 -17.22179 -16.69650 -16.31540 -16.10403 -15.57439 -15.26172 -14.68204 -14.43503 -14.09173 -14.02855 -13.71541 -13.63351 -13.53050 -13.25671 -13.07517 -12.65850 -12.54032 -12.42801 -12.33552 -12.05822 -12.01394 -11.87600 -11.45832 -11.33340 -11.29156 -11.10620 -11.02818 -11.01122 -10.93074 -10.57329 -10.52545 -10.28280 -10.13661 -9.92088 -9.74028 -9.63862 -9.05522 -8.87556 -8.63981 -8.31767 -7.01795 -5.83041 -3.12464 1.54089 2.52740 2.76523 3.33144 3.39130 3.44520 3.47476 3.52901 4.48759 4.52148 4.60410 4.88864 5.03071 5.07144 5.08453 5.16212 5.24621 5.28596 5.43578 5.44887 5.50077 5.59136 5.61283 5.66792 5.68544 5.74296 5.74774 5.77183 5.83721 5.92039 5.92287 5.97850 6.04082 6.10358 6.17561 6.19879 6.23112 6.32132 6.33769 6.40353 6.43675 6.51631 6.59218 6.72507 6.78291 6.94449 6.95437 7.64161 7.79382 8.23706 8.34635 8.40332 9.46779 10.02608 10.36720 11.39064 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008076 B = 0.005337 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.149843 B = 5245.521570 C = 6904.054190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.145 4.145 4 C 0.029 3.971 5 C -0.182 4.182 6 C -0.023 4.023 7 C 0.610 3.390 8 O -0.557 6.557 9 N -0.590 5.590 10 C 0.052 3.948 11 C 0.176 3.824 12 H 0.074 0.926 13 N -0.709 5.709 14 C -0.244 4.244 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.928 5.928 18 Si 0.903 3.097 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.090 4.090 23 C -0.131 4.131 24 C -0.125 4.125 25 C 0.121 3.879 26 N -0.262 5.262 27 C 0.094 3.906 28 N -0.282 5.282 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.169 0.831 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.091 0.909 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.416 -2.670 0.280 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.128 4.128 5 C -0.211 4.211 6 C -0.151 4.151 7 C 0.398 3.602 8 O -0.437 6.437 9 N -0.321 5.321 10 C -0.074 4.074 11 C 0.064 3.936 12 H 0.091 0.909 13 N -0.350 5.350 14 C -0.375 4.375 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.575 5.575 18 Si 0.735 3.265 19 H -0.204 1.204 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.092 4.092 23 C -0.189 4.189 24 C -0.183 4.183 25 C -0.002 4.002 26 N -0.049 5.049 27 C -0.047 4.047 28 N -0.114 5.114 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.186 0.814 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.224 0.776 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -14.049 -4.313 -0.126 14.696 hybrid contribution 0.653 0.907 -0.217 1.138 sum -13.396 -3.406 -0.343 13.827 Atomic orbital electron populations 1.21804 0.94268 1.01801 1.01888 1.19387 0.95280 0.95186 0.92912 1.21841 1.02083 0.94379 1.02024 1.21898 1.04426 0.90089 0.96350 1.22525 1.06188 0.99763 0.92599 1.21231 1.10893 0.89020 0.93936 1.16371 0.77320 0.82447 0.84022 1.90744 1.51376 1.34570 1.67035 1.48207 1.69323 1.05446 1.09113 1.24168 0.99626 0.82402 1.01158 1.21315 0.86955 0.96386 0.88989 0.90856 1.42538 1.10282 1.39276 1.42926 1.19260 0.97322 1.09897 1.11063 0.90971 1.24730 0.96928 0.98741 1.00013 1.69671 1.09211 1.33770 1.44892 0.86180 0.78659 0.79889 0.81819 1.20397 1.21888 1.21929 1.21810 0.96377 0.93617 0.97420 1.21809 0.98578 0.99625 0.98907 1.21684 0.95126 1.02847 0.98630 1.22150 1.00202 0.97051 0.80774 1.45412 1.44855 1.09601 1.04989 1.22194 1.01711 0.78986 1.01769 1.73041 1.17355 1.18070 1.02976 0.92408 0.92197 0.92800 0.90085 0.92081 0.91848 0.92160 0.81351 0.91937 0.88176 0.77557 0.93505 0.92836 0.92069 0.92732 0.91457 0.91925 0.93893 0.90686 0.91914 0.90044 0.89068 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 2 C -0.01 -0.09 3.38 -91.78 -0.31 -0.40 16 3 C -0.15 -1.73 8.79 37.16 0.33 -1.40 16 4 C 0.03 0.46 6.13 -82.47 -0.51 -0.05 16 5 C -0.18 -2.99 8.45 -38.98 -0.33 -3.32 16 6 C -0.02 -0.41 6.89 -82.06 -0.57 -0.98 16 7 C 0.61 11.57 7.85 -12.64 -0.10 11.47 16 8 O -0.56 -11.39 15.27 5.26 0.08 -11.31 16 9 N -0.59 -10.18 3.30 -170.91 -0.56 -10.74 16 10 C 0.05 0.84 5.37 -1.98 -0.01 0.83 16 11 C 0.18 3.11 3.15 -66.05 -0.21 2.91 16 12 H 0.07 1.26 7.80 -51.93 -0.41 0.85 16 13 N -0.71 -16.32 4.61 -51.61 -0.24 -16.56 16 14 C -0.24 -6.30 9.96 -15.06 -0.15 -6.45 16 15 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -27.35 13.06 55.49 0.72 -26.63 16 18 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.09 -1.35 0.94 -153.14 -0.14 -1.50 16 23 C -0.13 -1.54 8.21 37.16 0.31 -1.23 16 24 C -0.13 -2.04 7.67 37.16 0.29 -1.75 16 25 C 0.12 1.87 6.31 -2.98 -0.02 1.85 16 26 N -0.26 -4.47 3.75 -63.88 -0.24 -4.71 16 27 C 0.09 1.28 10.57 59.85 0.63 1.91 16 28 N -0.28 -4.79 11.90 33.64 0.40 -4.39 16 29 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.00 8.14 -51.92 -0.42 0.57 16 33 H 0.06 0.70 7.37 -51.92 -0.38 0.32 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.17 2.50 4.64 -52.49 -0.24 2.26 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.10 1.79 4.98 -51.93 -0.26 1.53 16 39 H 0.39 9.87 5.64 -40.82 -0.23 9.64 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.07 1.32 6.13 -51.93 -0.32 1.00 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 1.26 7.54 -51.93 -0.39 0.86 16 48 H 0.06 0.84 7.68 -51.93 -0.40 0.44 16 49 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 51 H 0.10 1.53 6.84 -51.93 -0.36 1.18 16 LS Contribution 399.85 15.07 6.03 6.03 Total: -1.00 -31.79 399.85 -7.83 -39.62 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -8.45 Total: 11.47 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -0.55 Total: 0.49 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: 0.08 Total: -63.02 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.79 -7.83 -39.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996474224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.035 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds