Wall clock time and date at job start Tue Mar 31 2020 19:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 C 1.50693 * 109.47390 * 120.00333 * 2 1 3 5 5 C 1.39673 * 126.07150 * 275.00250 * 4 2 1 6 6 C 1.38409 * 105.36207 * 179.97438 * 5 4 2 7 7 C 1.47163 * 126.88550 * 180.02562 * 6 5 4 8 8 O 1.21623 * 119.99870 * 172.12294 * 7 6 5 9 9 N 1.34778 * 119.99906 * 352.12092 * 7 6 5 10 10 C 1.48385 * 127.16816 * 353.23407 * 9 7 6 11 11 C 1.54943 * 103.37091 * 219.23473 * 10 9 7 12 12 H 1.08999 * 110.74508 * 204.38805 * 11 10 9 13 13 N 1.46505 * 110.89814 * 81.13669 * 11 10 9 14 14 C 1.36929 * 120.00210 * 91.49009 * 13 11 10 15 15 H 1.08003 * 119.99802 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00382 * 180.02562 * 14 13 11 17 17 N 1.31621 * 119.99994 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00382 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46909 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47162 * 119.99593 * 18 16 14 21 21 H 1.48497 * 109.47136 * 239.99522 * 18 16 14 22 22 C 1.54617 * 102.84089 * 322.72609 * 11 10 9 23 23 C 1.52997 * 110.33064 * 262.95853 * 22 11 10 24 24 C 1.52996 * 110.41796 * 140.78246 * 22 11 10 25 25 C 1.47476 * 127.03441 * 173.43851 * 9 7 6 26 26 N 1.36599 * 106.22775 * 0.25505 * 6 5 4 27 27 C 1.46501 * 125.18803 * 179.74198 * 26 6 5 28 28 N 1.28443 * 109.62070 * 359.55901 * 26 6 5 29 29 H 1.09007 * 109.46846 * 299.99442 * 1 2 3 30 30 H 1.09001 * 109.47327 * 59.99213 * 1 2 3 31 31 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46846 * 240.00558 * 2 1 3 33 33 H 1.09007 * 109.46812 * 60.00537 * 3 2 1 34 34 H 1.08998 * 109.47140 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47670 * 300.00577 * 3 2 1 36 36 H 1.07998 * 127.31721 * 359.97438 * 5 4 2 37 37 H 1.08995 * 110.52059 * 100.79572 * 10 9 7 38 38 H 1.09000 * 110.83894 * 337.81717 * 10 9 7 39 39 H 0.97006 * 119.99881 * 271.49762 * 13 11 10 40 40 H 0.97000 * 120.00171 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47565 * 177.06740 * 23 22 11 42 42 H 1.09004 * 109.47182 * 297.07665 * 23 22 11 43 43 H 1.09008 * 109.46725 * 57.06797 * 23 22 11 44 44 H 1.08997 * 109.47466 * 302.87974 * 24 22 11 45 45 H 1.09006 * 109.46774 * 62.87923 * 24 22 11 46 46 H 1.08999 * 109.47604 * 182.87652 * 24 22 11 47 47 H 1.09007 * 109.91408 * 35.15246 * 25 9 7 48 48 H 1.08998 * 109.91414 * 274.07351 * 25 9 7 49 49 H 1.08993 * 109.47277 * 84.53276 * 27 26 6 50 50 H 1.09008 * 109.47266 * 204.53501 * 27 26 6 51 51 H 1.09004 * 109.47209 * 324.53307 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2303 5 6 2.2137 -0.1406 2.4926 6 6 2.6850 -1.1662 3.2936 7 6 3.0336 -1.0833 4.7209 8 8 3.3008 -2.0946 5.3414 9 7 3.0569 0.1134 5.3405 10 6 2.8973 1.4497 4.7155 11 6 3.9221 2.3267 5.4780 12 1 3.6340 3.3773 5.4415 13 7 5.2716 2.1420 4.9386 14 6 5.7276 2.9601 3.9397 15 1 5.0925 3.7418 3.5498 16 6 7.0061 2.7848 3.4282 17 7 7.7803 1.8325 3.9037 18 14 7.6284 3.9013 2.0661 19 1 6.5733 4.8842 1.7109 20 1 8.8404 4.6221 2.5317 21 1 7.9660 3.0850 0.8724 22 6 3.8310 1.7839 6.9229 23 6 2.8967 2.6584 7.7614 24 6 5.2205 1.7286 7.5609 25 6 3.2508 0.3644 6.7807 26 7 2.7665 -2.2696 2.4925 27 6 3.2258 -3.5928 2.9221 28 7 2.3755 -1.9710 1.3060 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8901 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 2.0260 0.8828 2.7820 37 1 1.8844 1.8233 4.8657 38 1 3.1385 1.4123 3.6532 39 1 5.8422 1.4400 5.2890 40 1 8.6738 1.7102 3.5466 41 1 2.8017 2.2344 8.7610 42 1 3.3073 3.6657 7.8314 43 1 1.9151 2.6983 7.2889 44 1 5.8779 1.1128 6.9472 45 1 5.6284 2.7370 7.6312 46 1 5.1452 1.2967 8.5589 47 1 3.9478 -0.3647 7.1941 48 1 2.2950 0.3002 7.3007 49 1 2.3947 -4.1386 3.3686 50 1 3.6017 -4.1445 2.0603 51 1 4.0229 -3.4798 3.6570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996474224.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:25 Heat of formation + Delta-G solvation = 41.970584 kcal Electronic energy + Delta-G solvation = -30980.399106 eV Core-core repulsion = 27109.317109 eV Total energy + Delta-G solvation = -3871.081996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.62845 -41.16177 -39.23452 -36.87388 -35.72617 -34.87328 -33.26653 -32.61769 -31.96206 -29.55197 -28.07431 -27.97470 -27.71648 -27.42382 -25.80908 -24.33951 -23.32087 -22.65240 -21.38414 -20.23392 -19.61359 -19.04318 -18.05640 -17.67645 -17.41732 -16.96254 -16.55415 -16.32861 -15.72439 -15.57868 -15.30430 -15.06601 -14.93387 -14.69595 -14.51351 -14.21781 -14.06036 -13.83164 -13.54086 -13.42962 -13.39391 -13.20661 -12.92317 -12.88974 -12.72280 -12.69696 -12.53746 -12.29807 -12.15592 -12.06469 -12.02301 -12.01159 -11.81088 -11.43882 -11.39081 -11.28980 -11.15985 -10.91244 -10.21753 -9.87626 -9.71302 -8.90779 -7.90748 -5.17518 0.19422 1.29081 1.47351 1.48536 1.53434 1.57455 2.02569 2.15976 2.58026 3.25910 3.38551 3.41917 3.66984 3.85636 3.87836 3.91302 4.10657 4.13588 4.21770 4.26052 4.32043 4.36781 4.44487 4.49257 4.52054 4.58634 4.63917 4.67781 4.72822 4.81352 4.89804 4.90253 4.93784 4.99629 5.05413 5.06562 5.08969 5.19587 5.20463 5.32941 5.36046 5.43143 5.47318 5.48031 5.54506 5.56306 5.64867 5.72508 6.30396 6.40226 6.89771 7.06300 7.37976 8.14797 8.36006 9.33171 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008076 B = 0.005337 C = 0.004055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.149843 B = 5245.521570 C = 6904.054190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.008 4.008 3 C -0.143 4.143 4 C 0.024 3.976 5 C -0.181 4.181 6 C -0.050 4.050 7 C 0.600 3.400 8 O -0.583 6.583 9 N -0.591 5.591 10 C 0.060 3.940 11 C 0.165 3.835 12 H 0.088 0.912 13 N -0.723 5.723 14 C -0.224 4.224 15 H 0.087 0.913 16 C -0.077 4.077 17 N -0.973 5.973 18 Si 0.961 3.039 19 H -0.256 1.256 20 H -0.300 1.300 21 H -0.306 1.306 22 C -0.080 4.080 23 C -0.125 4.125 24 C -0.119 4.119 25 C 0.119 3.881 26 N -0.271 5.271 27 C 0.090 3.910 28 N -0.295 5.295 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.085 0.915 36 H 0.184 0.816 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.372 0.628 40 H 0.245 0.755 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.111 0.889 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 -0.890 0.203 17.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.200 4.200 4 C -0.132 4.132 5 C -0.210 4.210 6 C -0.178 4.178 7 C 0.389 3.611 8 O -0.466 6.466 9 N -0.322 5.322 10 C -0.065 4.065 11 C 0.054 3.946 12 H 0.106 0.894 13 N -0.362 5.362 14 C -0.356 4.356 15 H 0.105 0.895 16 C -0.268 4.268 17 N -0.624 5.624 18 Si 0.791 3.209 19 H -0.180 1.180 20 H -0.227 1.227 21 H -0.234 1.234 22 C -0.081 4.081 23 C -0.182 4.182 24 C -0.177 4.177 25 C -0.003 4.003 26 N -0.058 5.058 27 C -0.049 4.049 28 N -0.128 5.128 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.201 0.799 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.206 0.794 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.130 0.870 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.230 -2.487 -0.187 17.409 hybrid contribution 1.556 0.347 -0.141 1.601 sum -15.674 -2.140 -0.328 15.822 Atomic orbital electron populations 1.21757 0.92234 1.01833 1.03230 1.19548 0.96865 0.95081 0.91318 1.21833 1.00384 0.94256 1.03558 1.22517 1.03601 0.89783 0.97344 1.22763 1.05521 1.00058 0.92615 1.21380 1.12270 0.90167 0.93934 1.16623 0.77298 0.82686 0.84477 1.90714 1.52731 1.35453 1.67655 1.48321 1.68568 1.05356 1.09935 1.24114 1.01207 0.81427 0.99715 1.21659 0.84642 0.97604 0.90674 0.89398 1.42741 1.12403 1.38443 1.42611 1.19712 0.96807 1.09070 1.09995 0.89542 1.25449 0.97865 1.00622 1.02896 1.69842 1.09218 1.36361 1.47014 0.85239 0.78265 0.78471 0.78879 1.17955 1.22732 1.23379 1.21767 0.96345 0.93888 0.96127 1.21776 0.98345 0.98819 0.99260 1.21600 0.95359 1.01415 0.99320 1.22314 1.01296 0.96675 0.80020 1.45713 1.44888 1.10270 1.04932 1.22335 1.01908 0.78325 1.02344 1.73034 1.17855 1.18923 1.03037 0.92096 0.89805 0.93438 0.90089 0.91571 0.94414 0.89636 0.79936 0.87585 0.89932 0.79375 0.94637 0.90983 0.91823 0.90698 0.95615 0.92946 0.91442 0.92692 0.88812 0.88386 0.87021 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.18 71.98 0.66 -1.72 16 2 C -0.01 -0.18 3.38 -11.54 -0.04 -0.22 16 3 C -0.14 -3.10 8.79 71.98 0.63 -2.46 16 4 C 0.02 0.74 6.13 43.05 0.26 1.00 16 5 C -0.18 -5.80 8.45 22.66 0.19 -5.60 16 6 C -0.05 -1.79 6.89 40.79 0.28 -1.51 16 7 C 0.60 22.93 7.85 86.59 0.68 23.61 16 8 O -0.58 -24.44 15.27 -4.10 -0.06 -24.51 16 9 N -0.59 -19.80 3.30 -812.89 -2.68 -22.49 16 10 C 0.06 1.79 5.37 86.68 0.47 2.26 16 11 C 0.16 5.50 3.15 46.21 0.15 5.64 16 12 H 0.09 2.72 7.80 -2.39 -0.02 2.70 16 13 N -0.72 -33.36 4.61 -317.20 -1.46 -34.82 16 14 C -0.22 -11.47 9.96 84.03 0.84 -10.64 16 15 H 0.09 4.11 7.83 -2.91 -0.02 4.09 16 16 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 17 N -0.97 -59.66 13.06 21.65 0.28 -59.37 16 18 Si 0.96 45.31 29.55 68.60 2.03 47.34 16 19 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 21 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 22 C -0.08 -2.21 0.94 -51.29 -0.05 -2.26 16 23 C -0.12 -2.38 8.21 71.98 0.59 -1.79 16 24 C -0.12 -3.85 7.67 71.98 0.55 -3.30 16 25 C 0.12 3.47 6.31 86.53 0.55 4.02 16 26 N -0.27 -9.32 3.75 -356.01 -1.33 -10.66 16 27 C 0.09 2.51 10.57 127.77 1.35 3.87 16 28 N -0.30 -9.98 11.90 -47.50 -0.57 -10.55 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.07 1.35 7.37 -2.38 -0.02 1.33 16 34 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.18 5.10 4.64 -2.91 -0.01 5.08 16 37 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.82 4.98 -2.39 -0.01 2.81 16 39 H 0.37 19.63 5.64 -92.70 -0.52 19.10 16 40 H 0.24 14.82 8.31 -92.71 -0.77 14.05 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.02 1.03 6.13 -2.39 -0.01 1.02 16 45 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 46 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.05 1.83 7.54 -2.38 -0.02 1.82 16 48 H 0.09 2.19 7.68 -2.39 -0.02 2.17 16 49 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.11 2.55 8.14 -2.38 -0.02 2.53 16 51 H 0.09 2.69 6.84 -2.38 -0.02 2.68 16 Total: -1.00 -71.94 399.85 4.18 -67.75 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: 0.40 Total: 40.21 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 7.58 Total: 7.09 kcal Atomic # 7 Polarization: -132.12 SS G_CDS: -5.76 Total: -137.89 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.06 Total: -24.51 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -71.94 4.18 -67.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996474224.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.725 kcal (2) G-P(sol) polarization free energy of solvation -71.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds