Wall clock time and date at job start Tue Mar 31 2020 19:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47004 * 2 1 4 4 C 1.50701 * 109.47322 * 120.00195 * 2 1 3 5 5 C 1.39672 * 126.06758 * 275.00307 * 4 2 1 6 6 C 1.38400 * 105.35867 * 179.97438 * 5 4 2 7 7 C 1.47163 * 126.88367 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99986 * 174.18576 * 7 6 5 9 9 N 1.34770 * 120.00323 * 354.46520 * 7 6 5 10 10 C 1.47026 * 125.64805 * 4.47105 * 9 7 6 11 11 C 1.54318 * 107.27384 * 181.02912 * 10 9 7 12 12 H 1.09001 * 110.72193 * 140.55687 * 11 10 9 13 13 N 1.46503 * 110.71654 * 263.82733 * 11 10 9 14 14 C 1.36935 * 120.00078 * 273.54067 * 13 11 10 15 15 H 1.07993 * 119.99958 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99507 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00665 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99718 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47478 * 89.99534 * 18 16 14 20 20 H 1.48498 * 109.47054 * 210.00376 * 18 16 14 21 21 H 1.48509 * 109.46754 * 329.99634 * 18 16 14 22 22 C 1.55159 * 102.94346 * 22.18944 * 11 10 9 23 23 C 1.52999 * 110.99875 * 82.57559 * 22 11 10 24 24 C 1.53000 * 111.00437 * 206.38625 * 22 11 10 25 25 C 1.47421 * 125.65400 * 184.17052 * 9 7 6 26 26 N 1.36604 * 106.23295 * 0.22330 * 6 5 4 27 27 C 1.46501 * 125.19101 * 179.75289 * 26 6 5 28 28 N 1.28445 * 109.61409 * 359.61467 * 26 6 5 29 29 H 1.08999 * 109.47468 * 300.00047 * 1 2 3 30 30 H 1.09003 * 109.47305 * 59.99832 * 1 2 3 31 31 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47316 * 240.00487 * 2 1 3 33 33 H 1.09005 * 109.47346 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47908 * 300.00017 * 3 2 1 35 35 H 1.09004 * 109.47559 * 60.00203 * 3 2 1 36 36 H 1.08001 * 127.32099 * 359.95793 * 5 4 2 37 37 H 1.09004 * 109.87895 * 300.44741 * 10 9 7 38 38 H 1.08999 * 109.87901 * 61.60426 * 10 9 7 39 39 H 0.97004 * 119.99868 * 93.55088 * 13 11 10 40 40 H 0.97000 * 120.00406 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47378 * 60.00477 * 23 22 11 42 42 H 1.09006 * 109.46964 * 180.02562 * 23 22 11 43 43 H 1.09005 * 109.47321 * 299.99794 * 23 22 11 44 44 H 1.08994 * 109.47016 * 60.00517 * 24 22 11 45 45 H 1.09002 * 109.46962 * 180.02562 * 24 22 11 46 46 H 1.08998 * 109.47456 * 300.00223 * 24 22 11 47 47 H 1.09004 * 110.36664 * 274.74332 * 25 9 7 48 48 H 1.09003 * 110.36928 * 37.05914 * 25 9 7 49 49 H 1.09004 * 109.46750 * 94.68994 * 27 26 6 50 50 H 1.08995 * 109.46764 * 214.68890 * 27 26 6 51 51 H 1.09004 * 109.46948 * 334.69059 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6849 -1.1661 3.2936 7 6 3.0345 -1.0828 4.7207 8 8 3.3380 -2.0894 5.3323 9 7 3.0129 0.1080 5.3515 10 6 2.5721 1.3814 4.7633 11 6 2.7472 2.4699 5.8430 12 1 3.1184 3.3948 5.4017 13 7 1.4873 2.7022 6.5538 14 6 0.5732 3.5910 6.0543 15 1 0.7808 4.1204 5.1362 16 6 -0.6202 3.8114 6.7281 17 7 -0.8730 3.1666 7.8472 18 14 -1.8676 5.0234 6.0463 19 1 -2.8009 4.3134 5.1353 20 1 -2.6329 5.6284 7.1659 21 1 -1.1603 6.0920 5.2958 22 6 3.8068 1.8505 6.7922 23 6 5.2218 2.0748 6.2552 24 6 3.6665 2.4090 8.2097 25 6 3.4215 0.3486 6.7473 26 7 2.7658 -2.2697 2.4928 27 6 3.2246 -3.5930 2.9226 28 7 2.3755 -1.9709 1.3061 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 2.0262 0.8830 2.7820 37 1 3.1847 1.6198 3.8938 38 1 1.5238 1.3123 4.4729 39 1 1.3008 2.2265 7.3783 40 1 -1.7068 3.3209 8.3183 41 1 5.4125 3.1445 6.1691 42 1 5.9448 1.6304 6.9393 43 1 5.3163 1.6087 5.2743 44 1 2.6738 2.1766 8.5952 45 1 4.4215 1.9585 8.8541 46 1 3.8046 3.4900 8.1897 47 1 2.5922 0.1469 7.4255 48 1 4.2810 -0.2710 7.0032 49 1 2.3651 -4.2026 3.2016 50 1 3.7617 -4.0744 2.1054 51 1 3.8884 -3.4864 3.7807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996474230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:41 Heat of formation + Delta-G solvation = 54.498328 kcal Electronic energy + Delta-G solvation = -30643.996186 eV Core-core repulsion = 26773.457434 eV Total energy + Delta-G solvation = -3870.538753 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.50653 -39.92151 -37.89256 -35.92797 -34.10824 -33.43994 -32.23110 -30.90442 -30.71453 -28.10031 -27.20761 -26.85016 -26.66034 -26.30105 -24.15438 -23.01943 -22.18553 -21.22367 -20.24554 -18.99705 -18.46256 -17.28553 -16.72772 -16.33295 -16.28187 -15.59939 -15.32840 -14.76799 -14.44810 -14.18641 -14.14926 -13.96307 -13.76447 -13.41384 -13.31834 -12.99963 -12.82077 -12.55856 -12.52018 -12.40606 -12.11623 -12.01804 -11.84934 -11.65112 -11.56197 -11.42126 -11.19964 -11.14388 -11.02064 -10.93574 -10.65429 -10.57182 -10.32607 -10.25197 -9.94612 -9.81862 -9.68566 -9.03727 -9.00822 -8.79214 -8.32852 -7.09940 -5.86781 -3.17061 1.39572 2.41195 2.63145 3.27646 3.36755 3.38157 3.43590 3.45428 4.37560 4.48211 4.50671 4.78799 4.92481 4.98733 5.02652 5.13399 5.16872 5.19013 5.34787 5.38252 5.40921 5.51248 5.56864 5.63232 5.63598 5.65164 5.69691 5.71055 5.83092 5.87392 5.88816 5.94209 6.02625 6.07957 6.13069 6.18553 6.22462 6.25158 6.29661 6.32323 6.35617 6.49694 6.53925 6.62116 6.72310 6.80781 6.86837 7.61049 7.70542 8.10895 8.27525 8.30986 9.43041 9.96943 10.31586 11.35230 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.004587 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.829087 B = 6103.323438 C = 8051.906221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 C -0.145 4.145 4 C 0.029 3.971 5 C -0.185 4.185 6 C -0.029 4.029 7 C 0.601 3.399 8 O -0.558 6.558 9 N -0.586 5.586 10 C 0.064 3.936 11 C 0.178 3.822 12 H 0.073 0.927 13 N -0.711 5.711 14 C -0.247 4.247 15 H 0.073 0.927 16 C -0.006 4.006 17 N -0.929 5.929 18 Si 0.905 3.095 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C -0.089 4.089 23 C -0.130 4.130 24 C -0.125 4.125 25 C 0.124 3.876 26 N -0.263 5.263 27 C 0.088 3.912 28 N -0.282 5.282 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.173 0.827 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 -6.106 -10.618 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 C -0.203 4.203 4 C -0.128 4.128 5 C -0.213 4.213 6 C -0.157 4.157 7 C 0.389 3.611 8 O -0.438 6.438 9 N -0.317 5.317 10 C -0.062 4.062 11 C 0.066 3.934 12 H 0.090 0.910 13 N -0.352 5.352 14 C -0.378 4.378 15 H 0.091 0.909 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.206 1.206 22 C -0.091 4.091 23 C -0.188 4.188 24 C -0.183 4.183 25 C 0.002 3.998 26 N -0.050 5.050 27 C -0.052 4.052 28 N -0.114 5.114 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.190 0.810 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.106 0.894 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.564 -7.695 -10.943 17.046 hybrid contribution -1.057 0.993 0.362 1.494 sum 9.508 -6.702 -10.581 15.725 Atomic orbital electron populations 1.21829 0.93953 1.02033 1.02334 1.19388 0.95654 0.94956 0.92696 1.21840 1.01180 0.94722 1.02537 1.21951 1.04320 0.90046 0.96492 1.22729 1.05527 1.00611 0.92467 1.21295 1.11495 0.88953 0.93907 1.16483 0.77991 0.82653 0.84014 1.90732 1.51433 1.34279 1.67404 1.47996 1.62593 1.07375 1.13714 1.23685 1.00151 0.83924 0.98410 1.21261 0.87416 0.94304 0.90465 0.90969 1.42460 1.15101 1.49950 1.27728 1.19201 0.96549 1.16198 1.05863 0.90950 1.24734 0.98229 1.00093 0.97237 1.69648 1.25509 1.44982 1.17437 0.86227 0.81590 0.80756 0.77803 1.21657 1.21795 1.20629 1.22064 0.95607 0.93860 0.97525 1.21687 0.94767 1.01700 1.00606 1.21576 1.02132 1.01066 0.93511 1.22379 0.99758 0.95807 0.81863 1.45453 1.45010 1.09519 1.05041 1.22293 1.01697 0.79010 1.02238 1.73045 1.17352 1.17860 1.03181 0.91952 0.92094 0.92725 0.90158 0.92503 0.92004 0.91746 0.81024 0.91981 0.89805 0.77721 0.93360 0.92159 0.92779 0.92874 0.91144 0.93581 0.91966 0.90834 0.90996 0.90035 0.89359 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.01 -0.08 3.38 -91.77 -0.31 -0.39 16 3 C -0.14 -1.44 8.79 37.16 0.33 -1.11 16 4 C 0.03 0.41 6.13 -82.47 -0.51 -0.10 16 5 C -0.18 -2.79 8.58 -38.99 -0.33 -3.13 16 6 C -0.03 -0.47 6.92 -82.06 -0.57 -1.04 16 7 C 0.60 10.52 7.81 -12.64 -0.10 10.42 16 8 O -0.56 -10.57 14.97 5.25 0.08 -10.49 16 9 N -0.59 -9.77 3.31 -171.75 -0.57 -10.34 16 10 C 0.06 1.04 4.43 -3.06 -0.01 1.03 16 11 C 0.18 3.09 2.86 -66.10 -0.19 2.90 16 12 H 0.07 1.23 8.03 -51.93 -0.42 0.82 16 13 N -0.71 -15.85 4.61 -51.65 -0.24 -16.09 16 14 C -0.25 -6.22 9.98 -15.06 -0.15 -6.37 16 15 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 17 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 18 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 C -0.09 -1.32 0.83 -152.24 -0.13 -1.44 16 23 C -0.13 -1.60 8.58 37.16 0.32 -1.28 16 24 C -0.13 -1.88 8.22 37.16 0.31 -1.57 16 25 C 0.12 1.98 5.81 -2.41 -0.01 1.97 16 26 N -0.26 -4.00 3.75 -63.88 -0.24 -4.23 16 27 C 0.09 1.03 10.90 59.85 0.65 1.68 16 28 N -0.28 -4.30 11.90 33.64 0.40 -3.90 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.67 7.37 -51.93 -0.38 0.29 16 36 H 0.17 2.47 4.12 -52.49 -0.22 2.25 16 37 H 0.06 0.88 6.78 -51.93 -0.35 0.53 16 38 H 0.08 1.56 7.02 -51.93 -0.36 1.19 16 39 H 0.39 9.34 6.10 -40.82 -0.25 9.09 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 44 H 0.07 1.23 6.38 -51.93 -0.33 0.90 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.07 1.29 7.99 -51.93 -0.41 0.88 16 48 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.11 1.37 6.19 -51.93 -0.32 1.05 16 LS Contribution 400.09 15.07 6.03 6.03 Total: -1.00 -30.33 400.09 -7.79 -38.12 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -8.49 Total: 10.41 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -0.46 Total: 0.10 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: 0.08 Total: -60.38 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.33 -7.79 -38.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996474230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.619 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds