Wall clock time and date at job start Tue Mar 31 2020 19:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47004 * 2 1 4 4 C 1.50701 * 109.47322 * 120.00195 * 2 1 3 5 5 C 1.39672 * 126.06758 * 275.00307 * 4 2 1 6 6 C 1.38400 * 105.35867 * 179.97438 * 5 4 2 7 7 C 1.47163 * 126.88367 * 179.97438 * 6 5 4 8 8 O 1.21631 * 119.99986 * 174.18576 * 7 6 5 9 9 N 1.34770 * 120.00323 * 354.46520 * 7 6 5 10 10 C 1.47026 * 125.64805 * 4.47105 * 9 7 6 11 11 C 1.54318 * 107.27384 * 181.02912 * 10 9 7 12 12 H 1.09001 * 110.72193 * 140.55687 * 11 10 9 13 13 N 1.46503 * 110.71654 * 263.82733 * 11 10 9 14 14 C 1.36935 * 120.00078 * 273.54067 * 13 11 10 15 15 H 1.07993 * 119.99958 * 0.02562 * 14 13 11 16 16 C 1.38812 * 119.99507 * 180.02562 * 14 13 11 17 17 N 1.31615 * 120.00665 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99718 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47478 * 89.99534 * 18 16 14 20 20 H 1.48498 * 109.47054 * 210.00376 * 18 16 14 21 21 H 1.48509 * 109.46754 * 329.99634 * 18 16 14 22 22 C 1.55159 * 102.94346 * 22.18944 * 11 10 9 23 23 C 1.52999 * 110.99875 * 82.57559 * 22 11 10 24 24 C 1.53000 * 111.00437 * 206.38625 * 22 11 10 25 25 C 1.47421 * 125.65400 * 184.17052 * 9 7 6 26 26 N 1.36604 * 106.23295 * 0.22330 * 6 5 4 27 27 C 1.46501 * 125.19101 * 179.75289 * 26 6 5 28 28 N 1.28445 * 109.61409 * 359.61467 * 26 6 5 29 29 H 1.08999 * 109.47468 * 300.00047 * 1 2 3 30 30 H 1.09003 * 109.47305 * 59.99832 * 1 2 3 31 31 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47316 * 240.00487 * 2 1 3 33 33 H 1.09005 * 109.47346 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47908 * 300.00017 * 3 2 1 35 35 H 1.09004 * 109.47559 * 60.00203 * 3 2 1 36 36 H 1.08001 * 127.32099 * 359.95793 * 5 4 2 37 37 H 1.09004 * 109.87895 * 300.44741 * 10 9 7 38 38 H 1.08999 * 109.87901 * 61.60426 * 10 9 7 39 39 H 0.97004 * 119.99868 * 93.55088 * 13 11 10 40 40 H 0.97000 * 120.00406 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.47378 * 60.00477 * 23 22 11 42 42 H 1.09006 * 109.46964 * 180.02562 * 23 22 11 43 43 H 1.09005 * 109.47321 * 299.99794 * 23 22 11 44 44 H 1.08994 * 109.47016 * 60.00517 * 24 22 11 45 45 H 1.09002 * 109.46962 * 180.02562 * 24 22 11 46 46 H 1.08998 * 109.47456 * 300.00223 * 24 22 11 47 47 H 1.09004 * 110.36664 * 274.74332 * 25 9 7 48 48 H 1.09003 * 110.36928 * 37.05914 * 25 9 7 49 49 H 1.09004 * 109.46750 * 94.68994 * 27 26 6 50 50 H 1.08995 * 109.46764 * 214.68890 * 27 26 6 51 51 H 1.09004 * 109.46948 * 334.69059 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2137 -0.1405 2.4926 6 6 2.6849 -1.1661 3.2936 7 6 3.0345 -1.0828 4.7207 8 8 3.3380 -2.0894 5.3323 9 7 3.0129 0.1080 5.3515 10 6 2.5721 1.3814 4.7633 11 6 2.7472 2.4699 5.8430 12 1 3.1184 3.3948 5.4017 13 7 1.4873 2.7022 6.5538 14 6 0.5732 3.5910 6.0543 15 1 0.7808 4.1204 5.1362 16 6 -0.6202 3.8114 6.7281 17 7 -0.8730 3.1666 7.8472 18 14 -1.8676 5.0234 6.0463 19 1 -2.8009 4.3134 5.1353 20 1 -2.6329 5.6284 7.1659 21 1 -1.1603 6.0920 5.2958 22 6 3.8068 1.8505 6.7922 23 6 5.2218 2.0748 6.2552 24 6 3.6665 2.4090 8.2097 25 6 3.4215 0.3486 6.7473 26 7 2.7658 -2.2697 2.4928 27 6 3.2246 -3.5930 2.9226 28 7 2.3755 -1.9709 1.3061 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9564 0.8900 36 1 2.0262 0.8830 2.7820 37 1 3.1847 1.6198 3.8938 38 1 1.5238 1.3123 4.4729 39 1 1.3008 2.2265 7.3783 40 1 -1.7068 3.3209 8.3183 41 1 5.4125 3.1445 6.1691 42 1 5.9448 1.6304 6.9393 43 1 5.3163 1.6087 5.2743 44 1 2.6738 2.1766 8.5952 45 1 4.4215 1.9585 8.8541 46 1 3.8046 3.4900 8.1897 47 1 2.5922 0.1469 7.4255 48 1 4.2810 -0.2710 7.0032 49 1 2.3651 -4.2026 3.2016 50 1 3.7617 -4.0744 2.1054 51 1 3.8884 -3.4864 3.7807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996474230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:31 Heat of formation + Delta-G solvation = 36.868652 kcal Electronic energy + Delta-G solvation = -30644.760666 eV Core-core repulsion = 26773.457434 eV Total energy + Delta-G solvation = -3871.303233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 6.91 seconds Orbital eigenvalues (eV) -43.66262 -41.26995 -39.27458 -36.87956 -35.76653 -34.86157 -33.25927 -32.62302 -31.98072 -29.57065 -28.13367 -27.98479 -27.70639 -27.54201 -25.84861 -24.34355 -23.31779 -22.59868 -21.37952 -20.33459 -19.61830 -19.07003 -18.04499 -17.56938 -17.52623 -16.96851 -16.54912 -16.35456 -15.75987 -15.57848 -15.33335 -15.16845 -15.01002 -14.58731 -14.50588 -14.26053 -14.20985 -13.75605 -13.51410 -13.43782 -13.30936 -13.21908 -13.04526 -12.88649 -12.80662 -12.74053 -12.66065 -12.31005 -12.17739 -12.13440 -12.03170 -12.00930 -11.84170 -11.46039 -11.41942 -11.32372 -11.15577 -10.87583 -10.24862 -9.91819 -9.67913 -8.98212 -7.89250 -5.17185 0.14318 1.27850 1.49699 1.52236 1.52906 1.60559 2.00960 2.07677 2.60191 3.19469 3.37153 3.41918 3.58510 3.79751 3.86498 3.91151 4.04407 4.12619 4.23609 4.28032 4.31029 4.32589 4.43086 4.46401 4.54120 4.57427 4.60852 4.63372 4.71789 4.78921 4.87780 4.89706 4.91850 5.00488 5.03304 5.07686 5.09013 5.11234 5.18694 5.22886 5.32671 5.41332 5.41726 5.45329 5.52585 5.57975 5.62859 5.71003 6.31677 6.34712 6.84650 7.02788 7.40068 8.13556 8.36387 9.34049 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.004587 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3125.829087 B = 6103.323438 C = 8051.906221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.026 3.974 5 C -0.186 4.186 6 C -0.050 4.050 7 C 0.597 3.403 8 O -0.578 6.578 9 N -0.586 5.586 10 C 0.077 3.923 11 C 0.170 3.830 12 H 0.084 0.916 13 N -0.722 5.722 14 C -0.232 4.232 15 H 0.085 0.915 16 C -0.071 4.071 17 N -0.969 5.969 18 Si 0.963 3.037 19 H -0.293 1.293 20 H -0.303 1.303 21 H -0.264 1.264 22 C -0.076 4.076 23 C -0.123 4.123 24 C -0.120 4.120 25 C 0.123 3.877 26 N -0.267 5.267 27 C 0.083 3.917 28 N -0.290 5.290 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.177 0.823 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.375 0.625 40 H 0.247 0.753 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.049 0.951 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.114 0.886 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.025 -5.443 -12.778 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.130 4.130 5 C -0.215 4.215 6 C -0.178 4.178 7 C 0.386 3.614 8 O -0.460 6.460 9 N -0.317 5.317 10 C -0.048 4.048 11 C 0.059 3.941 12 H 0.102 0.898 13 N -0.362 5.362 14 C -0.363 4.363 15 H 0.103 0.897 16 C -0.263 4.263 17 N -0.620 5.620 18 Si 0.793 3.207 19 H -0.221 1.221 20 H -0.231 1.231 21 H -0.188 1.188 22 C -0.077 4.077 23 C -0.181 4.181 24 C -0.177 4.177 25 C 0.001 3.999 26 N -0.054 5.054 27 C -0.056 4.056 28 N -0.123 5.123 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.194 0.806 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.209 0.791 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.133 0.867 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.255 -7.024 -13.150 19.299 hybrid contribution -1.499 0.714 0.990 1.933 sum 10.757 -6.311 -12.160 17.418 Atomic orbital electron populations 1.21813 0.93679 1.01598 1.02778 1.19537 0.95787 0.95651 0.91690 1.21830 1.01279 0.93693 1.03155 1.22462 1.03572 0.89774 0.97226 1.22842 1.05201 1.00658 0.92770 1.21281 1.12885 0.90093 0.93554 1.16692 0.77659 0.82476 0.84566 1.90713 1.52409 1.34822 1.68018 1.48039 1.62389 1.07367 1.13886 1.23459 0.99304 0.83367 0.98717 1.21521 0.86221 0.95231 0.91102 0.89781 1.42619 1.16457 1.49404 1.27691 1.19630 0.96410 1.15018 1.05280 0.89749 1.25433 1.00423 1.02467 0.97993 1.69807 1.25665 1.47342 1.19200 0.85288 0.79444 0.79232 0.76703 1.22095 1.23057 1.18848 1.22019 0.96507 0.92290 0.96887 1.21649 0.92746 1.02782 1.00877 1.21507 1.01093 1.01068 0.94068 1.22392 0.99264 0.97008 0.81204 1.45766 1.44688 1.10129 1.04821 1.22481 1.02102 0.78009 1.03003 1.73052 1.17623 1.18385 1.03238 0.93378 0.89754 0.93610 0.89105 0.92338 0.89977 0.92547 0.80623 0.89207 0.92215 0.79121 0.94370 0.90883 0.91072 0.92736 0.94339 0.90995 0.92197 0.93269 0.89835 0.89334 0.86728 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.18 71.98 0.66 -2.16 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.17 16 3 C -0.14 -2.46 8.79 71.98 0.63 -1.82 16 4 C 0.03 0.71 6.13 43.05 0.26 0.97 16 5 C -0.19 -5.46 8.58 22.65 0.19 -5.26 16 6 C -0.05 -1.61 6.92 40.78 0.28 -1.33 16 7 C 0.60 20.80 7.81 86.59 0.68 21.47 16 8 O -0.58 -21.91 14.97 -4.13 -0.06 -21.97 16 9 N -0.59 -19.28 3.31 -815.54 -2.70 -21.98 16 10 C 0.08 2.43 4.43 86.73 0.38 2.81 16 11 C 0.17 5.71 2.86 46.18 0.13 5.84 16 12 H 0.08 2.67 8.03 -2.39 -0.02 2.66 16 13 N -0.72 -32.36 4.61 -317.33 -1.46 -33.83 16 14 C -0.23 -11.61 9.98 84.03 0.84 -10.77 16 15 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 17 N -0.97 -57.14 13.06 21.65 0.28 -56.86 16 18 Si 0.96 44.03 29.55 68.60 2.03 46.05 16 19 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 C -0.08 -2.13 0.83 -50.71 -0.04 -2.17 16 23 C -0.12 -2.64 8.58 71.98 0.62 -2.02 16 24 C -0.12 -3.49 8.22 71.98 0.59 -2.90 16 25 C 0.12 3.89 5.81 86.93 0.50 4.40 16 26 N -0.27 -7.87 3.75 -356.01 -1.33 -9.20 16 27 C 0.08 1.88 10.90 127.77 1.39 3.27 16 28 N -0.29 -8.50 11.90 -47.50 -0.57 -9.06 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.07 7.37 -2.38 -0.02 1.05 16 36 H 0.18 4.87 4.12 -2.91 -0.01 4.86 16 37 H 0.09 2.37 6.78 -2.39 -0.02 2.35 16 38 H 0.06 2.21 7.02 -2.39 -0.02 2.20 16 39 H 0.38 18.68 6.10 -92.71 -0.57 18.11 16 40 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.05 1.18 7.91 -2.38 -0.02 1.16 16 44 H 0.04 1.37 6.38 -2.39 -0.02 1.36 16 45 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.05 1.79 7.99 -2.39 -0.02 1.77 16 48 H 0.08 2.44 8.00 -2.39 -0.02 2.42 16 49 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 50 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.10 2.51 6.19 -2.38 -0.01 2.49 16 Total: -1.00 -66.10 400.09 4.10 -62.00 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.36 Total: 38.08 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 7.56 Total: 6.78 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -5.78 Total: -130.93 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.06 Total: -21.97 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.10 4.10 -62.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996474230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.866 kcal (2) G-P(sol) polarization free energy of solvation -66.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.91 seconds