Wall clock time and date at job start Tue Mar 31 2020 19:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47040 * 2 1 4 4 C 1.50706 * 109.46760 * 119.99974 * 2 1 3 5 5 N 1.30450 * 125.98479 * 300.33043 * 4 2 1 6 6 N 1.39933 * 108.89233 * 180.16655 * 5 4 2 7 7 C 1.46506 * 125.75390 * 179.81321 * 6 5 4 8 8 C 1.34260 * 108.49468 * 359.54576 * 6 5 4 9 9 C 1.38045 * 107.41537 * 0.26463 * 8 6 5 10 10 C 1.47425 * 126.41396 * 179.97438 * 9 8 6 11 11 O 1.21609 * 119.99708 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00088 * 0.02798 * 10 9 8 13 13 C 1.47017 * 125.64659 * 0.02684 * 12 10 9 14 14 C 1.54325 * 107.26839 * 181.02309 * 13 12 10 15 15 H 1.09001 * 110.72442 * 140.55258 * 14 13 12 16 16 N 1.46501 * 110.71919 * 263.64929 * 14 13 12 17 17 C 1.36938 * 119.99821 * 273.54701 * 16 14 13 18 18 H 1.07994 * 120.00285 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99770 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46913 * 89.99961 * 21 19 17 23 23 H 1.48500 * 109.46851 * 210.00140 * 21 19 17 24 24 H 1.48501 * 109.47170 * 329.99717 * 21 19 17 25 25 C 1.55158 * 102.94415 * 22.19039 * 14 13 12 26 26 C 1.53000 * 111.00789 * 82.57183 * 25 14 13 27 27 C 1.53001 * 111.00367 * 206.38791 * 25 14 13 28 28 C 1.47426 * 125.64361 * 179.71496 * 12 10 9 29 29 H 1.08999 * 109.47244 * 300.00448 * 1 2 3 30 30 H 1.09000 * 109.46947 * 60.00416 * 1 2 3 31 31 H 1.09002 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47244 * 239.99552 * 2 1 3 33 33 H 1.09002 * 109.47068 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47367 * 299.99330 * 3 2 1 35 35 H 1.08999 * 109.47468 * 59.99689 * 3 2 1 36 36 H 1.08999 * 109.46892 * 269.69085 * 7 6 5 37 37 H 1.09000 * 109.46803 * 29.68258 * 7 6 5 38 38 H 1.09000 * 109.47214 * 149.69051 * 7 6 5 39 39 H 1.08002 * 126.29377 * 180.26824 * 8 6 5 40 40 H 1.09002 * 109.88013 * 300.43030 * 13 12 10 41 41 H 1.08996 * 109.88597 * 61.44791 * 13 12 10 42 42 H 0.96998 * 120.00078 * 93.54642 * 16 14 13 43 43 H 0.96993 * 120.00518 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.46737 * 59.99993 * 26 25 14 45 45 H 1.08991 * 109.47300 * 179.97438 * 26 25 14 46 46 H 1.08999 * 109.46699 * 300.00657 * 26 25 14 47 47 H 1.09006 * 109.46978 * 59.99700 * 27 25 14 48 48 H 1.08997 * 109.47049 * 179.97438 * 27 25 14 49 49 H 1.08996 * 109.47367 * 299.99911 * 27 25 14 50 50 H 1.09009 * 110.36667 * 274.74408 * 28 12 10 51 51 H 1.08997 * 110.37027 * 37.07271 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7852 -0.3716 2.4658 6 7 2.4299 -1.2727 3.3205 7 6 2.4019 -1.2332 4.7847 8 6 3.0736 -2.1830 2.5724 9 6 2.8480 -1.8639 1.2484 10 6 3.3624 -2.5904 0.0733 11 8 3.0899 -2.2045 -1.0473 12 7 4.1345 -3.6824 0.2408 13 6 4.5387 -4.2558 1.5328 14 6 5.4343 -5.4761 1.2322 15 1 6.2657 -5.5269 1.9353 16 7 4.6521 -6.7143 1.2671 17 6 4.4583 -7.3685 2.4544 18 1 4.8825 -6.9720 3.3650 19 6 3.7167 -8.5415 2.4876 20 7 3.2001 -9.0251 1.3778 21 14 3.4518 -9.4335 4.1074 22 1 2.2156 -8.9264 4.7553 23 1 3.3159 -10.8904 3.8536 24 1 4.6134 -9.1929 5.0007 25 6 5.9465 -5.1861 -0.2034 26 6 7.1478 -4.2389 -0.1763 27 6 6.2921 -6.4846 -0.9351 28 6 4.7082 -4.5031 -0.8411 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.2341 -0.6301 5.1478 37 1 1.4619 -0.7937 5.1184 38 1 2.4890 -2.2463 5.1772 39 1 3.6601 -3.0125 2.9391 40 1 5.0986 -3.5177 2.1071 41 1 3.6568 -4.5690 2.0916 42 1 4.2714 -7.0707 0.4492 43 1 2.6822 -9.8449 1.4009 44 1 7.9555 -4.6929 0.3979 45 1 7.4869 -4.0529 -1.1952 46 1 6.8570 -3.2967 0.2881 47 1 5.4032 -7.1121 -1.0012 48 1 6.6480 -6.2524 -1.9388 49 1 7.0709 -7.0145 -0.3867 50 1 3.9879 -5.2514 -1.1724 51 1 5.0117 -3.8717 -1.6761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996609538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:52 Heat of formation + Delta-G solvation = 52.768970 kcal Electronic energy + Delta-G solvation = -30500.053833 eV Core-core repulsion = 26629.440089 eV Total energy + Delta-G solvation = -3870.613743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.66 seconds Orbital eigenvalues (eV) -41.44444 -39.67024 -37.64611 -35.71831 -33.94387 -33.31155 -32.39252 -30.83382 -30.25267 -28.02151 -27.16228 -27.06977 -26.71172 -25.94085 -24.05479 -22.61409 -22.29587 -21.07281 -19.76832 -18.90767 -18.54012 -17.25854 -16.52117 -16.10616 -15.84331 -15.46967 -15.00282 -14.71342 -14.70807 -14.36073 -14.11775 -13.84291 -13.66525 -13.37219 -13.10539 -13.04433 -12.81043 -12.60384 -12.47172 -12.40735 -12.07822 -11.98473 -11.81840 -11.62962 -11.50112 -11.33124 -11.11928 -11.02889 -10.98460 -10.93120 -10.63993 -10.57924 -10.41748 -10.28568 -9.86552 -9.71416 -9.36749 -9.30472 -9.03370 -8.59961 -8.13690 -7.10899 -5.88703 -3.18930 1.62885 2.28797 2.36321 3.34327 3.39420 3.42326 3.44700 3.74862 4.32837 4.46716 4.66125 4.75425 4.82622 4.96645 5.04949 5.08677 5.22776 5.23764 5.27198 5.27984 5.40185 5.45362 5.57850 5.61675 5.63410 5.68444 5.69509 5.72673 5.88994 5.90640 5.96767 5.99854 6.06819 6.09128 6.20445 6.21806 6.22388 6.30955 6.34304 6.36877 6.40310 6.55608 6.65007 6.70373 6.74233 6.86105 6.91692 7.57219 7.65895 7.99401 8.28979 8.62161 9.40972 9.96289 10.30979 11.33282 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.003903 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.471978 B = 7171.441174 C = 8512.115344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 C -0.137 4.137 4 C 0.140 3.860 5 N -0.303 5.303 6 N -0.366 5.366 7 C 0.098 3.902 8 C 0.092 3.908 9 C -0.281 4.281 10 C 0.607 3.393 11 O -0.556 6.556 12 N -0.602 5.602 13 C 0.065 3.935 14 C 0.179 3.821 15 H 0.069 0.931 16 N -0.712 5.712 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.006 4.006 20 N -0.927 5.927 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.125 4.125 28 C 0.124 3.876 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.196 0.804 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.388 0.612 43 H 0.257 0.743 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.045 0.955 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 15.943 1.558 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.050 4.050 3 C -0.195 4.195 4 C -0.028 4.028 5 N -0.124 5.124 6 N -0.144 5.144 7 C -0.043 4.043 8 C -0.058 4.058 9 C -0.296 4.296 10 C 0.397 3.603 11 O -0.436 6.436 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.067 3.933 15 H 0.087 0.913 16 N -0.352 5.352 17 C -0.380 4.380 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.574 5.574 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.091 4.091 26 C -0.187 4.187 27 C -0.183 4.183 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.135 0.865 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.212 0.788 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.223 0.777 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.072 0.928 46 H 0.071 0.929 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.807 16.927 2.105 17.153 hybrid contribution 0.020 -1.404 0.558 1.511 sum 1.827 15.522 2.664 15.855 Atomic orbital electron populations 1.21771 0.94092 1.02029 1.01751 1.19959 0.95836 0.95509 0.93746 1.21761 1.01040 0.94924 1.01777 1.22324 0.94150 0.93080 0.93290 1.77058 1.20244 1.14949 1.00119 1.48317 1.37892 1.21247 1.06965 1.21961 1.04363 1.04273 0.73717 1.24041 0.95939 0.94572 0.91291 1.20182 1.13368 1.03446 0.92582 1.16857 0.77260 0.78704 0.87481 1.90652 1.59934 1.67812 1.25212 1.48153 1.49866 1.26645 1.08706 1.23506 1.00300 0.96822 0.85452 1.21222 0.92466 0.86063 0.93590 0.91270 1.42451 1.61022 1.23082 1.08690 1.19188 1.27705 1.03929 0.87138 0.91079 1.24739 1.00404 0.98261 0.96892 1.69646 1.39239 1.22946 1.25550 0.86235 0.77867 0.79200 0.83090 1.21755 1.21727 1.20696 1.22047 0.94030 0.95901 0.97085 1.21673 0.96831 0.98670 1.01493 1.21573 1.02681 0.95700 0.98326 1.22289 0.94177 0.93482 0.89932 0.92555 0.92123 0.92642 0.86450 0.92815 0.92139 0.92560 0.90443 0.89081 0.88933 0.78752 0.92830 0.90420 0.77667 0.93319 0.92387 0.92764 0.92861 0.91222 0.93582 0.92132 0.91270 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 2 C -0.03 -0.43 3.26 -91.77 -0.30 -0.73 16 3 C -0.14 -1.62 9.17 37.15 0.34 -1.28 16 4 C 0.14 2.20 5.77 -82.02 -0.47 1.73 16 5 N -0.30 -4.56 12.50 33.90 0.42 -4.14 16 6 N -0.37 -4.77 3.98 -67.59 -0.27 -5.04 16 7 C 0.10 0.80 11.44 59.85 0.68 1.48 16 8 C 0.09 1.29 9.97 -16.56 -0.17 1.13 16 9 C -0.28 -4.63 6.10 -105.07 -0.64 -5.27 16 10 C 0.61 11.02 7.85 -12.52 -0.10 10.92 16 11 O -0.56 -11.18 14.82 5.27 0.08 -11.10 16 12 N -0.60 -10.24 3.31 -171.64 -0.57 -10.81 16 13 C 0.07 1.05 4.41 -3.07 -0.01 1.04 16 14 C 0.18 3.12 2.85 -66.09 -0.19 2.93 16 15 H 0.07 1.18 8.02 -51.93 -0.42 0.77 16 16 N -0.71 -15.87 4.62 -51.65 -0.24 -16.11 16 17 C -0.25 -6.22 9.98 -15.06 -0.15 -6.37 16 18 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 19 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 20 N -0.93 -26.44 13.06 55.49 0.72 -25.71 16 21 Si 0.91 21.02 29.55 -169.99 -5.02 16.00 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.09 -1.35 0.84 -152.24 -0.13 -1.48 16 26 C -0.13 -1.64 8.58 37.16 0.32 -1.32 16 27 C -0.13 -1.92 8.22 37.16 0.31 -1.62 16 28 C 0.12 2.05 5.83 -2.41 -0.01 2.03 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.12 1.87 5.60 -51.93 -0.29 1.58 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.20 2.41 4.42 -52.49 -0.23 2.18 16 40 H 0.05 0.72 6.85 -51.93 -0.36 0.37 16 41 H 0.08 1.39 6.90 -51.93 -0.36 1.03 16 42 H 0.39 9.42 6.12 -40.82 -0.25 9.17 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.06 0.69 8.14 -51.92 -0.42 0.26 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.68 7.91 -51.93 -0.41 0.27 16 47 H 0.07 1.24 6.39 -51.93 -0.33 0.91 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.07 1.26 7.99 -51.92 -0.41 0.85 16 51 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -31.43 402.25 -7.60 -39.03 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.52 Total: 10.27 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.28 Total: 1.55 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.07 Total: -61.81 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.43 -7.60 -39.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996609538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.800 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.66 seconds