Wall clock time and date at job start Tue Mar 31 2020 19:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47040 * 2 1 4 4 C 1.50706 * 109.46760 * 119.99974 * 2 1 3 5 5 N 1.30450 * 125.98479 * 300.33043 * 4 2 1 6 6 N 1.39933 * 108.89233 * 180.16655 * 5 4 2 7 7 C 1.46506 * 125.75390 * 179.81321 * 6 5 4 8 8 C 1.34260 * 108.49468 * 359.54576 * 6 5 4 9 9 C 1.38045 * 107.41537 * 0.26463 * 8 6 5 10 10 C 1.47425 * 126.41396 * 179.97438 * 9 8 6 11 11 O 1.21609 * 119.99708 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00088 * 0.02798 * 10 9 8 13 13 C 1.47017 * 125.64659 * 0.02684 * 12 10 9 14 14 C 1.54325 * 107.26839 * 181.02309 * 13 12 10 15 15 H 1.09001 * 110.72442 * 140.55258 * 14 13 12 16 16 N 1.46501 * 110.71919 * 263.64929 * 14 13 12 17 17 C 1.36938 * 119.99821 * 273.54701 * 16 14 13 18 18 H 1.07994 * 120.00285 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99770 * 179.97438 * 17 16 14 20 20 N 1.31617 * 120.00444 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46913 * 89.99961 * 21 19 17 23 23 H 1.48500 * 109.46851 * 210.00140 * 21 19 17 24 24 H 1.48501 * 109.47170 * 329.99717 * 21 19 17 25 25 C 1.55158 * 102.94415 * 22.19039 * 14 13 12 26 26 C 1.53000 * 111.00789 * 82.57183 * 25 14 13 27 27 C 1.53001 * 111.00367 * 206.38791 * 25 14 13 28 28 C 1.47426 * 125.64361 * 179.71496 * 12 10 9 29 29 H 1.08999 * 109.47244 * 300.00448 * 1 2 3 30 30 H 1.09000 * 109.46947 * 60.00416 * 1 2 3 31 31 H 1.09002 * 109.47226 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47244 * 239.99552 * 2 1 3 33 33 H 1.09002 * 109.47068 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47367 * 299.99330 * 3 2 1 35 35 H 1.08999 * 109.47468 * 59.99689 * 3 2 1 36 36 H 1.08999 * 109.46892 * 269.69085 * 7 6 5 37 37 H 1.09000 * 109.46803 * 29.68258 * 7 6 5 38 38 H 1.09000 * 109.47214 * 149.69051 * 7 6 5 39 39 H 1.08002 * 126.29377 * 180.26824 * 8 6 5 40 40 H 1.09002 * 109.88013 * 300.43030 * 13 12 10 41 41 H 1.08996 * 109.88597 * 61.44791 * 13 12 10 42 42 H 0.96998 * 120.00078 * 93.54642 * 16 14 13 43 43 H 0.96993 * 120.00518 * 179.97438 * 20 19 17 44 44 H 1.09008 * 109.46737 * 59.99993 * 26 25 14 45 45 H 1.08991 * 109.47300 * 179.97438 * 26 25 14 46 46 H 1.08999 * 109.46699 * 300.00657 * 26 25 14 47 47 H 1.09006 * 109.46978 * 59.99700 * 27 25 14 48 48 H 1.08997 * 109.47049 * 179.97438 * 27 25 14 49 49 H 1.08996 * 109.47367 * 299.99911 * 27 25 14 50 50 H 1.09009 * 110.36667 * 274.74408 * 28 12 10 51 51 H 1.08997 * 110.37027 * 37.07271 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7852 -0.3716 2.4658 6 7 2.4299 -1.2727 3.3205 7 6 2.4019 -1.2332 4.7847 8 6 3.0736 -2.1830 2.5724 9 6 2.8480 -1.8639 1.2484 10 6 3.3624 -2.5904 0.0733 11 8 3.0899 -2.2045 -1.0473 12 7 4.1345 -3.6824 0.2408 13 6 4.5387 -4.2558 1.5328 14 6 5.4343 -5.4761 1.2322 15 1 6.2657 -5.5269 1.9353 16 7 4.6521 -6.7143 1.2671 17 6 4.4583 -7.3685 2.4544 18 1 4.8825 -6.9720 3.3650 19 6 3.7167 -8.5415 2.4876 20 7 3.2001 -9.0251 1.3778 21 14 3.4518 -9.4335 4.1074 22 1 2.2156 -8.9264 4.7553 23 1 3.3159 -10.8904 3.8536 24 1 4.6134 -9.1929 5.0007 25 6 5.9465 -5.1861 -0.2034 26 6 7.1478 -4.2389 -0.1763 27 6 6.2921 -6.4846 -0.9351 28 6 4.7082 -4.5031 -0.8411 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.2341 -0.6301 5.1478 37 1 1.4619 -0.7937 5.1184 38 1 2.4890 -2.2463 5.1772 39 1 3.6601 -3.0125 2.9391 40 1 5.0986 -3.5177 2.1071 41 1 3.6568 -4.5690 2.0916 42 1 4.2714 -7.0707 0.4492 43 1 2.6822 -9.8449 1.4009 44 1 7.9555 -4.6929 0.3979 45 1 7.4869 -4.0529 -1.1952 46 1 6.8570 -3.2967 0.2881 47 1 5.4032 -7.1121 -1.0012 48 1 6.6480 -6.2524 -1.9388 49 1 7.0709 -7.0145 -0.3867 50 1 3.9879 -5.2514 -1.1724 51 1 5.0117 -3.8717 -1.6761 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996609538.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:46 Heat of formation + Delta-G solvation = 33.760888 kcal Electronic energy + Delta-G solvation = -30500.878085 eV Core-core repulsion = 26629.440089 eV Total energy + Delta-G solvation = -3871.437995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.57544 -41.00513 -39.04181 -36.76780 -35.66582 -34.68095 -33.34881 -32.59753 -31.42400 -29.48630 -28.15164 -28.03689 -27.95829 -27.15891 -25.77525 -23.90331 -23.42139 -22.36126 -21.00320 -20.23822 -19.72044 -19.05039 -17.74951 -17.37411 -17.12636 -16.70695 -16.26058 -16.22100 -15.79092 -15.70807 -15.43503 -15.33554 -14.87610 -14.50260 -14.42865 -14.22563 -13.97405 -13.71943 -13.58063 -13.33794 -13.26325 -13.20496 -13.00626 -12.97149 -12.80319 -12.72961 -12.65886 -12.38325 -12.13252 -12.12381 -12.05496 -12.00920 -11.77470 -11.73168 -11.42545 -11.24274 -10.90367 -10.68300 -10.37399 -9.81339 -9.46451 -8.97442 -7.89003 -5.17163 0.49214 1.08688 1.42475 1.51292 1.52010 1.60086 2.12273 2.42503 2.59706 3.29300 3.42407 3.48099 3.60303 3.82393 3.89338 3.95120 4.04085 4.10381 4.17047 4.25184 4.33820 4.38298 4.41692 4.47084 4.57523 4.60496 4.64576 4.67513 4.68881 4.78177 4.81119 4.89593 4.92779 4.92964 4.94726 5.04544 5.09478 5.11829 5.14464 5.27977 5.32572 5.33477 5.39301 5.44700 5.55622 5.57708 5.63775 5.87516 6.31637 6.51225 6.65835 7.24271 7.39666 8.14311 8.37106 9.34443 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.003903 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.471978 B = 7171.441174 C = 8512.115344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.034 4.034 3 C -0.128 4.128 4 C 0.128 3.872 5 N -0.314 5.314 6 N -0.359 5.359 7 C 0.086 3.914 8 C 0.103 3.897 9 C -0.315 4.315 10 C 0.601 3.399 11 O -0.585 6.585 12 N -0.602 5.602 13 C 0.075 3.925 14 C 0.171 3.829 15 H 0.084 0.916 16 N -0.723 5.723 17 C -0.232 4.232 18 H 0.087 0.913 19 C -0.072 4.072 20 N -0.970 5.970 21 Si 0.965 3.035 22 H -0.293 1.293 23 H -0.305 1.305 24 H -0.263 1.263 25 C -0.076 4.076 26 C -0.122 4.122 27 C -0.119 4.119 28 C 0.123 3.877 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.213 0.787 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.374 0.626 43 H 0.247 0.753 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.054 0.946 47 H 0.037 0.963 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.042 0.958 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 17.767 3.556 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.055 4.055 3 C -0.186 4.186 4 C -0.039 4.039 5 N -0.136 5.136 6 N -0.136 5.136 7 C -0.053 4.053 8 C -0.049 4.049 9 C -0.330 4.330 10 C 0.392 3.608 11 O -0.468 6.468 12 N -0.334 5.334 13 C -0.051 4.051 14 C 0.061 3.939 15 H 0.102 0.898 16 N -0.363 5.363 17 C -0.364 4.364 18 H 0.105 0.895 19 C -0.265 4.265 20 N -0.620 5.620 21 Si 0.795 3.205 22 H -0.220 1.220 23 H -0.233 1.233 24 H -0.188 1.188 25 C -0.078 4.078 26 C -0.179 4.179 27 C -0.177 4.177 28 C 0.001 3.999 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.229 0.771 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.208 0.792 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.320 18.809 4.160 19.548 hybrid contribution -0.410 -1.896 -0.036 1.940 sum 2.910 16.913 4.124 17.650 Atomic orbital electron populations 1.21723 0.93068 1.01235 1.02948 1.19975 0.96694 0.96443 0.92365 1.21694 1.00486 0.93559 1.02878 1.22570 0.94192 0.93149 0.94024 1.77010 1.20783 1.15724 1.00046 1.48744 1.36348 1.20047 1.08500 1.22416 1.05855 1.06256 0.70808 1.24182 0.95461 0.94680 0.90590 1.20221 1.15228 1.04489 0.93025 1.17189 0.76984 0.78825 0.87762 1.90627 1.60972 1.68709 1.26453 1.48199 1.49735 1.26354 1.09084 1.23361 0.99587 0.96942 0.85178 1.21485 0.92400 0.84520 0.95508 0.89829 1.42633 1.61545 1.24652 1.07428 1.19654 1.25294 1.03063 0.88389 0.89522 1.25462 1.01698 0.99843 0.99453 1.69816 1.41279 1.23351 1.27599 0.85264 0.78027 0.77109 0.80089 1.22030 1.23256 1.18803 1.22005 0.94426 0.96186 0.95167 1.21629 0.95646 0.97862 1.02791 1.21503 1.01117 0.95294 0.99817 1.22265 0.94272 0.92993 0.90420 0.92136 0.90076 0.94388 0.88791 0.93566 0.90209 0.92202 0.88150 0.88250 0.86877 0.77095 0.89279 0.92128 0.79230 0.94397 0.90912 0.91400 0.92668 0.94439 0.91255 0.92232 0.93936 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.18 71.98 0.66 -2.58 16 2 C -0.03 -0.97 3.26 -11.54 -0.04 -1.01 16 3 C -0.13 -2.91 9.17 71.98 0.66 -2.25 16 4 C 0.13 3.99 5.77 43.52 0.25 4.25 16 5 N -0.31 -9.06 12.50 -46.67 -0.58 -9.64 16 6 N -0.36 -8.56 3.98 -367.76 -1.46 -10.03 16 7 C 0.09 1.11 11.44 127.77 1.46 2.57 16 8 C 0.10 2.72 9.97 84.28 0.84 3.56 16 9 C -0.31 -10.25 6.10 -20.15 -0.12 -10.37 16 10 C 0.60 22.01 7.85 86.66 0.68 22.69 16 11 O -0.58 -24.24 14.82 -4.06 -0.06 -24.30 16 12 N -0.60 -20.29 3.31 -815.21 -2.70 -22.98 16 13 C 0.07 2.27 4.41 86.73 0.38 2.65 16 14 C 0.17 5.69 2.85 46.18 0.13 5.82 16 15 H 0.08 2.59 8.02 -2.39 -0.02 2.57 16 16 N -0.72 -32.19 4.62 -317.32 -1.47 -33.65 16 17 C -0.23 -11.44 9.98 84.03 0.84 -10.60 16 18 H 0.09 3.93 7.83 -2.91 -0.02 3.90 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 20 N -0.97 -56.99 13.06 21.65 0.28 -56.71 16 21 Si 0.96 43.31 29.55 68.60 2.03 45.34 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.31 -14.28 7.11 99.48 0.71 -13.58 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 C -0.08 -2.21 0.84 -50.71 -0.04 -2.26 16 26 C -0.12 -2.72 8.58 71.98 0.62 -2.10 16 27 C -0.12 -3.61 8.22 71.98 0.59 -3.02 16 28 C 0.12 4.09 5.83 86.93 0.51 4.60 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.09 3.10 5.60 -2.39 -0.01 3.09 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.21 4.65 4.42 -2.91 -0.01 4.64 16 40 H 0.09 2.11 6.85 -2.39 -0.02 2.09 16 41 H 0.06 2.08 6.90 -2.39 -0.02 2.07 16 42 H 0.37 18.74 6.12 -92.71 -0.57 18.17 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 46 H 0.05 1.23 7.91 -2.39 -0.02 1.21 16 47 H 0.04 1.37 6.39 -2.38 -0.02 1.36 16 48 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 49 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.04 1.63 7.99 -2.38 -0.02 1.61 16 51 H 0.08 2.43 7.95 -2.39 -0.02 2.41 16 Total: -1.00 -70.00 402.25 4.28 -65.72 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.36 Total: 37.69 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 7.89 Total: 8.56 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -5.93 Total: -133.01 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -70.00 4.28 -65.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996609538.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.483 kcal (2) G-P(sol) polarization free energy of solvation -70.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds