Wall clock time and date at job start Tue Mar 31 2020 19:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47512 * 2 1 4 4 C 1.50701 * 109.47110 * 119.99853 * 2 1 3 5 5 N 1.30448 * 125.98895 * 300.17292 * 4 2 1 6 6 N 1.39933 * 108.89589 * 180.26443 * 5 4 2 7 7 C 1.46505 * 125.75434 * 179.73535 * 6 5 4 8 8 C 1.34257 * 108.49415 * 359.73062 * 6 5 4 9 9 C 1.38046 * 107.41452 * 0.02562 * 8 6 5 10 10 C 1.47432 * 126.41313 * 179.97438 * 9 8 6 11 11 O 1.21605 * 119.99903 * 213.19077 * 10 9 8 12 12 N 1.34773 * 120.00469 * 33.18665 * 10 9 8 13 13 C 1.48153 * 127.83391 * 355.44560 * 12 10 9 14 14 C 1.54388 * 104.61810 * 140.41787 * 13 12 10 15 15 H 1.09000 * 110.33910 * 264.99273 * 14 13 12 16 16 N 1.46496 * 110.34678 * 142.73383 * 14 13 12 17 17 C 1.36934 * 119.99891 * 89.46163 * 16 14 13 18 18 H 1.08006 * 120.00032 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00155 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00671 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00011 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47169 * 90.00327 * 21 19 17 23 23 H 1.48498 * 109.47747 * 210.00308 * 21 19 17 24 24 H 1.48499 * 109.47125 * 330.00519 * 21 19 17 25 25 C 1.54287 * 104.96149 * 23.85744 * 14 13 12 26 26 C 1.53007 * 110.33788 * 118.87572 * 25 14 13 27 27 C 1.52993 * 110.34540 * 241.02686 * 25 14 13 28 28 C 1.48311 * 127.77172 * 175.36625 * 12 10 9 29 29 H 1.09001 * 109.47070 * 59.99688 * 1 2 3 30 30 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46979 * 300.00515 * 1 2 3 32 32 H 1.09004 * 109.46953 * 239.99968 * 2 1 3 33 33 H 1.08993 * 109.47565 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46709 * 300.00289 * 3 2 1 35 35 H 1.08994 * 109.47059 * 59.99437 * 3 2 1 36 36 H 1.09002 * 109.46842 * 269.99641 * 7 6 5 37 37 H 1.08997 * 109.46773 * 29.99895 * 7 6 5 38 38 H 1.08997 * 109.46977 * 150.00031 * 7 6 5 39 39 H 1.08001 * 126.29551 * 179.97438 * 8 6 5 40 40 H 1.09000 * 110.41062 * 21.62868 * 13 12 10 41 41 H 1.08998 * 110.50000 * 259.24498 * 13 12 10 42 42 H 0.97000 * 120.00247 * 269.46460 * 16 14 13 43 43 H 0.96992 * 120.00380 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46998 * 181.47919 * 26 25 14 45 45 H 1.09001 * 109.46949 * 301.47279 * 26 25 14 46 46 H 1.08990 * 109.47023 * 61.47546 * 26 25 14 47 47 H 1.08997 * 109.47360 * 298.52467 * 27 25 14 48 48 H 1.08996 * 109.47439 * 58.53100 * 27 25 14 49 49 H 1.09010 * 109.46910 * 178.52717 * 27 25 14 50 50 H 1.09012 * 110.37867 * 100.79493 * 28 12 10 51 51 H 1.08993 * 110.50929 * 338.31766 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7877 -0.3699 2.4658 6 7 2.4334 -1.2703 3.3204 7 6 2.4094 -1.2281 4.7847 8 6 3.0785 -2.1795 2.5723 9 6 2.8483 -1.8636 1.2484 10 6 3.3624 -2.5903 0.0731 11 8 3.6345 -1.9842 -0.9454 12 7 3.5309 -3.9264 0.1275 13 6 3.3461 -4.8188 1.2955 14 6 2.6787 -6.0850 0.7166 15 1 1.5955 -6.0243 0.8223 16 7 3.1906 -7.2826 1.3873 17 6 2.5739 -7.7513 2.5165 18 1 1.7104 -7.2378 2.9129 19 6 3.0593 -8.8857 3.1523 20 7 2.4663 -9.3366 4.2375 21 14 4.5533 -9.7734 2.4672 22 1 5.7857 -9.2091 3.0737 23 1 4.4607 -11.2200 2.7895 24 1 4.6013 -9.5967 0.9935 25 6 3.0721 -6.0960 -0.7752 26 6 3.8781 -7.3545 -1.1032 27 6 1.8229 -6.0212 -1.6553 28 6 3.9421 -4.8356 -0.9698 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.2402 -0.6209 5.1442 37 1 1.4686 -0.7918 5.1201 38 1 2.5016 -2.2401 5.1789 39 1 3.6697 -3.0057 2.9389 40 1 2.6952 -4.3495 2.0332 41 1 4.3087 -5.0672 1.7423 42 1 3.9664 -7.7435 1.0315 43 1 2.8053 -10.1295 4.6815 44 1 4.1708 -7.3352 -2.1531 45 1 4.7704 -7.3878 -0.4780 46 1 3.2676 -8.2370 -0.9124 47 1 1.1947 -6.8923 -1.4694 48 1 1.2660 -5.1145 -1.4194 49 1 2.1182 -6.0036 -2.7045 50 1 4.9993 -5.0857 -0.8795 51 1 3.7399 -4.3801 -1.9391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996609540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:58 Heat of formation + Delta-G solvation = 58.454968 kcal Electronic energy + Delta-G solvation = -30475.678939 eV Core-core repulsion = 26605.311759 eV Total energy + Delta-G solvation = -3870.367180 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.49486 -39.74718 -37.81149 -35.82178 -34.22758 -33.30967 -32.45226 -31.18806 -30.34315 -28.06662 -27.23978 -27.14383 -27.03245 -25.99361 -23.88387 -22.69099 -22.23373 -21.23209 -19.74979 -18.94947 -18.64433 -17.65727 -16.87443 -16.28206 -15.82061 -15.44580 -15.20475 -14.81928 -14.54476 -14.47744 -14.25318 -13.91197 -13.68691 -13.43714 -13.37001 -13.08520 -12.93250 -12.75964 -12.62248 -12.47598 -12.14488 -11.97342 -11.94508 -11.71121 -11.46548 -11.41387 -11.21184 -11.17082 -11.07901 -11.00217 -10.67224 -10.60373 -10.53552 -10.37904 -9.98856 -9.67062 -9.60116 -9.36271 -9.09278 -8.66188 -8.36627 -7.40273 -5.89006 -3.25962 1.58878 2.24046 2.30836 3.17961 3.27861 3.30265 3.37661 3.49131 4.28330 4.47708 4.57992 4.72757 4.79009 4.95920 4.97134 4.97372 5.05720 5.16549 5.18038 5.24770 5.32514 5.40222 5.45487 5.52714 5.57903 5.58969 5.62272 5.64851 5.82098 5.82535 5.85951 5.89644 5.90983 5.98622 6.00767 6.10574 6.16171 6.22485 6.23642 6.26994 6.33098 6.39878 6.48886 6.54833 6.60608 6.77277 6.81110 7.59245 7.84664 7.88110 8.29983 8.45437 9.07864 9.80010 9.99168 11.28859 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.003761 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.646041 B = 7443.813925 C = 8778.302067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.022 4.022 3 C -0.137 4.137 4 C 0.135 3.865 5 N -0.298 5.298 6 N -0.363 5.363 7 C 0.097 3.903 8 C 0.101 3.899 9 C -0.280 4.280 10 C 0.614 3.386 11 O -0.552 6.552 12 N -0.616 5.616 13 C 0.072 3.928 14 C 0.182 3.818 15 H 0.071 0.929 16 N -0.740 5.740 17 C -0.250 4.250 18 H 0.090 0.910 19 C 0.010 3.990 20 N -0.930 5.930 21 Si 0.878 3.122 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.274 1.274 25 C -0.091 4.091 26 C -0.134 4.134 27 C -0.130 4.130 28 C 0.120 3.880 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.186 0.814 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.367 0.633 43 H 0.260 0.740 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 15.612 -5.958 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.195 4.195 4 C -0.032 4.032 5 N -0.119 5.119 6 N -0.141 5.141 7 C -0.044 4.044 8 C -0.050 4.050 9 C -0.295 4.295 10 C 0.404 3.596 11 O -0.431 6.431 12 N -0.349 5.349 13 C -0.054 4.054 14 C 0.071 3.929 15 H 0.089 0.911 16 N -0.384 5.384 17 C -0.380 4.380 18 H 0.108 0.892 19 C -0.187 4.187 20 N -0.577 5.577 21 Si 0.708 3.292 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.200 1.200 25 C -0.093 4.093 26 C -0.191 4.191 27 C -0.188 4.188 28 C -0.003 4.003 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.203 0.797 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.204 0.796 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.079 0.921 48 H 0.072 0.928 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.234 16.805 -5.309 17.625 hybrid contribution 1.615 -1.561 -0.398 2.281 sum 1.381 15.244 -5.708 16.336 Atomic orbital electron populations 1.21812 0.93964 1.02096 1.02057 1.19774 0.95709 0.95795 0.92943 1.21745 1.01321 0.94566 1.01841 1.22255 0.94738 0.92867 0.93386 1.77073 1.20263 1.14554 0.99995 1.48284 1.37560 1.21180 1.07058 1.22000 1.04452 1.04495 0.73461 1.23320 0.96427 0.94382 0.90873 1.20113 1.13704 1.03097 0.92580 1.16826 0.76737 0.79627 0.86395 1.90716 1.52600 1.66873 1.32932 1.48851 1.67232 1.05184 1.13612 1.23683 1.01411 0.91680 0.88597 1.21069 0.97395 0.85887 0.88597 0.91065 1.43024 1.35368 1.28949 1.31078 1.19077 1.10522 1.08195 1.00207 0.89194 1.24652 0.98751 0.98025 0.97223 1.69690 1.42147 1.25610 1.20298 0.86675 0.83948 0.79773 0.78831 1.21036 1.21644 1.19965 1.21787 0.95948 0.94432 0.97097 1.21755 0.99856 0.97425 1.00112 1.21784 0.96689 1.01936 0.98380 1.22418 0.97954 0.88733 0.91202 0.92044 0.92620 0.92240 0.87869 0.92535 0.92120 0.92421 0.90437 0.88934 0.88702 0.79707 0.90718 0.90705 0.79624 0.92943 0.93065 0.92599 0.91135 0.92076 0.92784 0.92942 0.91438 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.18 37.16 0.34 -1.23 16 2 C -0.02 -0.28 3.24 -91.77 -0.30 -0.58 16 3 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 4 C 0.14 1.99 5.76 -82.02 -0.47 1.51 16 5 N -0.30 -4.26 12.50 33.89 0.42 -3.84 16 6 N -0.36 -4.52 3.98 -67.60 -0.27 -4.79 16 7 C 0.10 0.78 11.44 59.85 0.68 1.46 16 8 C 0.10 1.33 9.51 -16.56 -0.16 1.17 16 9 C -0.28 -4.27 5.76 -105.07 -0.61 -4.87 16 10 C 0.61 10.16 7.69 -12.52 -0.10 10.06 16 11 O -0.55 -10.29 15.68 5.27 0.08 -10.21 16 12 N -0.62 -9.50 3.32 -170.43 -0.57 -10.07 16 13 C 0.07 1.14 5.61 -2.41 -0.01 1.12 16 14 C 0.18 3.18 3.35 -66.53 -0.22 2.96 16 15 H 0.07 1.33 7.66 -51.93 -0.40 0.94 16 16 N -0.74 -15.60 4.40 -52.07 -0.23 -15.83 16 17 C -0.25 -6.43 10.44 -15.06 -0.16 -6.59 16 18 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 20 N -0.93 -27.60 13.97 55.49 0.78 -26.82 16 21 Si 0.88 20.60 27.73 -169.99 -4.71 15.88 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -5.94 6.52 56.52 0.37 -5.57 16 25 C -0.09 -1.34 1.03 -153.11 -0.16 -1.50 16 26 C -0.13 -1.95 7.11 37.16 0.26 -1.69 16 27 C -0.13 -1.76 8.23 37.15 0.31 -1.46 16 28 C 0.12 1.72 6.14 -2.32 -0.01 1.71 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.48 6.31 -51.93 -0.33 1.16 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.19 2.10 6.57 -52.49 -0.34 1.75 16 40 H 0.07 1.15 5.57 -51.93 -0.29 0.86 16 41 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 42 H 0.37 7.62 2.95 -40.82 -0.12 7.50 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.84 6.86 -51.93 -0.36 0.49 16 46 H 0.07 1.15 7.84 -51.93 -0.41 0.74 16 47 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 50 H 0.07 0.93 7.85 -51.92 -0.41 0.52 16 51 H 0.08 1.14 7.64 -51.93 -0.40 0.74 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -32.11 401.00 -7.36 -39.48 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -8.55 Total: 9.09 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.35 Total: 1.07 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: 0.14 Total: -61.35 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.71 Total: 15.88 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.11 -7.36 -39.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996609540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.930 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds