Wall clock time and date at job start Tue Mar 31 2020 19:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47512 * 2 1 4 4 C 1.50701 * 109.47110 * 119.99853 * 2 1 3 5 5 N 1.30448 * 125.98895 * 300.17292 * 4 2 1 6 6 N 1.39933 * 108.89589 * 180.26443 * 5 4 2 7 7 C 1.46505 * 125.75434 * 179.73535 * 6 5 4 8 8 C 1.34257 * 108.49415 * 359.73062 * 6 5 4 9 9 C 1.38046 * 107.41452 * 0.02562 * 8 6 5 10 10 C 1.47432 * 126.41313 * 179.97438 * 9 8 6 11 11 O 1.21605 * 119.99903 * 213.19077 * 10 9 8 12 12 N 1.34773 * 120.00469 * 33.18665 * 10 9 8 13 13 C 1.48153 * 127.83391 * 355.44560 * 12 10 9 14 14 C 1.54388 * 104.61810 * 140.41787 * 13 12 10 15 15 H 1.09000 * 110.33910 * 264.99273 * 14 13 12 16 16 N 1.46496 * 110.34678 * 142.73383 * 14 13 12 17 17 C 1.36934 * 119.99891 * 89.46163 * 16 14 13 18 18 H 1.08006 * 120.00032 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00155 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00671 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00011 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47169 * 90.00327 * 21 19 17 23 23 H 1.48498 * 109.47747 * 210.00308 * 21 19 17 24 24 H 1.48499 * 109.47125 * 330.00519 * 21 19 17 25 25 C 1.54287 * 104.96149 * 23.85744 * 14 13 12 26 26 C 1.53007 * 110.33788 * 118.87572 * 25 14 13 27 27 C 1.52993 * 110.34540 * 241.02686 * 25 14 13 28 28 C 1.48311 * 127.77172 * 175.36625 * 12 10 9 29 29 H 1.09001 * 109.47070 * 59.99688 * 1 2 3 30 30 H 1.08996 * 109.46993 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46979 * 300.00515 * 1 2 3 32 32 H 1.09004 * 109.46953 * 239.99968 * 2 1 3 33 33 H 1.08993 * 109.47565 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46709 * 300.00289 * 3 2 1 35 35 H 1.08994 * 109.47059 * 59.99437 * 3 2 1 36 36 H 1.09002 * 109.46842 * 269.99641 * 7 6 5 37 37 H 1.08997 * 109.46773 * 29.99895 * 7 6 5 38 38 H 1.08997 * 109.46977 * 150.00031 * 7 6 5 39 39 H 1.08001 * 126.29551 * 179.97438 * 8 6 5 40 40 H 1.09000 * 110.41062 * 21.62868 * 13 12 10 41 41 H 1.08998 * 110.50000 * 259.24498 * 13 12 10 42 42 H 0.97000 * 120.00247 * 269.46460 * 16 14 13 43 43 H 0.96992 * 120.00380 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.46998 * 181.47919 * 26 25 14 45 45 H 1.09001 * 109.46949 * 301.47279 * 26 25 14 46 46 H 1.08990 * 109.47023 * 61.47546 * 26 25 14 47 47 H 1.08997 * 109.47360 * 298.52467 * 27 25 14 48 48 H 1.08996 * 109.47439 * 58.53100 * 27 25 14 49 49 H 1.09010 * 109.46910 * 178.52717 * 27 25 14 50 50 H 1.09012 * 110.37867 * 100.79493 * 28 12 10 51 51 H 1.08993 * 110.50929 * 338.31766 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7877 -0.3699 2.4658 6 7 2.4334 -1.2703 3.3204 7 6 2.4094 -1.2281 4.7847 8 6 3.0785 -2.1795 2.5723 9 6 2.8483 -1.8636 1.2484 10 6 3.3624 -2.5903 0.0731 11 8 3.6345 -1.9842 -0.9454 12 7 3.5309 -3.9264 0.1275 13 6 3.3461 -4.8188 1.2955 14 6 2.6787 -6.0850 0.7166 15 1 1.5955 -6.0243 0.8223 16 7 3.1906 -7.2826 1.3873 17 6 2.5739 -7.7513 2.5165 18 1 1.7104 -7.2378 2.9129 19 6 3.0593 -8.8857 3.1523 20 7 2.4663 -9.3366 4.2375 21 14 4.5533 -9.7734 2.4672 22 1 5.7857 -9.2091 3.0737 23 1 4.4607 -11.2200 2.7895 24 1 4.6013 -9.5967 0.9935 25 6 3.0721 -6.0960 -0.7752 26 6 3.8781 -7.3545 -1.1032 27 6 1.8229 -6.0212 -1.6553 28 6 3.9421 -4.8356 -0.9698 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 3.2402 -0.6209 5.1442 37 1 1.4686 -0.7918 5.1201 38 1 2.5016 -2.2401 5.1789 39 1 3.6697 -3.0057 2.9389 40 1 2.6952 -4.3495 2.0332 41 1 4.3087 -5.0672 1.7423 42 1 3.9664 -7.7435 1.0315 43 1 2.8053 -10.1295 4.6815 44 1 4.1708 -7.3352 -2.1531 45 1 4.7704 -7.3878 -0.4780 46 1 3.2676 -8.2370 -0.9124 47 1 1.1947 -6.8923 -1.4694 48 1 1.2660 -5.1145 -1.4194 49 1 2.1182 -6.0036 -2.7045 50 1 4.9993 -5.0857 -0.8795 51 1 3.7399 -4.3801 -1.9391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996609540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:57 Heat of formation + Delta-G solvation = 38.977916 kcal Electronic energy + Delta-G solvation = -30476.523528 eV Core-core repulsion = 26605.311759 eV Total energy + Delta-G solvation = -3871.211768 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.55585 -41.02218 -39.13649 -36.79675 -35.89461 -34.67589 -33.37499 -33.05094 -31.43834 -29.54251 -28.29307 -28.13339 -28.03350 -27.09508 -25.55448 -23.85043 -23.39862 -22.54433 -20.90233 -20.36612 -19.82719 -19.33135 -18.02291 -17.45625 -17.12958 -16.59086 -16.37077 -16.19849 -15.89264 -15.64100 -15.46491 -15.27051 -14.92879 -14.65069 -14.57212 -14.31922 -14.11262 -13.92218 -13.60172 -13.43907 -13.34585 -13.25019 -13.04876 -12.96912 -12.91970 -12.70408 -12.51546 -12.41722 -12.15815 -12.12437 -12.02362 -11.93223 -11.86652 -11.72447 -11.56262 -11.34704 -10.97538 -10.87001 -10.37393 -9.85033 -9.60020 -9.24608 -7.98335 -5.32217 0.52533 1.11557 1.40130 1.41987 1.43737 1.51332 1.95659 2.27400 2.51799 3.27435 3.32252 3.49176 3.58977 3.63718 3.81838 3.91989 3.97843 4.01831 4.13266 4.24040 4.32613 4.37080 4.38273 4.40801 4.50259 4.55738 4.58268 4.66761 4.69577 4.77769 4.78920 4.83335 4.85758 4.93649 4.94901 5.00181 5.01382 5.08485 5.10224 5.14645 5.29101 5.33263 5.33490 5.38439 5.50312 5.52370 5.82492 5.85727 6.25119 6.50918 6.60962 7.11240 7.19042 7.86008 8.06222 9.22696 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.003761 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.646041 B = 7443.813925 C = 8778.302067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.025 4.025 3 C -0.130 4.130 4 C 0.125 3.875 5 N -0.312 5.312 6 N -0.360 5.360 7 C 0.087 3.913 8 C 0.107 3.893 9 C -0.310 4.310 10 C 0.615 3.385 11 O -0.577 6.577 12 N -0.613 5.613 13 C 0.084 3.916 14 C 0.175 3.825 15 H 0.054 0.946 16 N -0.738 5.738 17 C -0.226 4.226 18 H 0.059 0.941 19 C -0.056 4.056 20 N -0.982 5.982 21 Si 0.939 3.061 22 H -0.278 1.278 23 H -0.302 1.302 24 H -0.244 1.244 25 C -0.083 4.083 26 C -0.133 4.133 27 C -0.127 4.127 28 C 0.120 3.880 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.202 0.798 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.373 0.627 43 H 0.256 0.744 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.054 0.946 48 H 0.046 0.954 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 16.376 -7.171 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 C -0.187 4.187 4 C -0.043 4.043 5 N -0.134 5.134 6 N -0.137 5.137 7 C -0.053 4.053 8 C -0.045 4.045 9 C -0.325 4.325 10 C 0.406 3.594 11 O -0.458 6.458 12 N -0.345 5.345 13 C -0.042 4.042 14 C 0.065 3.935 15 H 0.072 0.928 16 N -0.383 5.383 17 C -0.357 4.357 18 H 0.077 0.923 19 C -0.248 4.248 20 N -0.632 5.632 21 Si 0.767 3.233 22 H -0.205 1.205 23 H -0.230 1.230 24 H -0.169 1.169 25 C -0.085 4.085 26 C -0.191 4.191 27 C -0.184 4.184 28 C -0.002 4.002 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.219 0.781 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.210 0.790 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.073 0.927 48 H 0.065 0.935 49 H 0.093 0.907 50 H 0.098 0.902 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.921 17.616 -6.557 18.819 hybrid contribution 1.168 -1.710 0.020 2.071 sum 2.089 15.906 -6.537 17.323 Atomic orbital electron populations 1.21759 0.92730 1.01646 1.03076 1.19817 0.96712 0.96363 0.91614 1.21692 1.00479 0.93665 1.02912 1.22550 0.94746 0.92901 0.94058 1.77023 1.20905 1.15341 1.00085 1.48673 1.36353 1.20255 1.08412 1.22381 1.05784 1.06091 0.70997 1.23529 0.95981 0.94583 0.90417 1.20195 1.15275 1.04027 0.93028 1.16997 0.76270 0.79731 0.86442 1.90693 1.53815 1.67331 1.33990 1.48812 1.66987 1.05020 1.13714 1.23406 1.01326 0.90813 0.88642 1.21194 0.96506 0.85190 0.90607 0.92796 1.42939 1.35318 1.30087 1.29983 1.19007 1.08921 1.07095 1.00703 0.92296 1.25369 1.02157 0.99401 0.97864 1.69866 1.44486 1.26462 1.22436 0.85658 0.80265 0.77506 0.79856 1.20464 1.22964 1.16864 1.21728 0.96677 0.95110 0.94948 1.21743 0.99176 0.96127 1.02037 1.21751 0.95918 1.01257 0.99467 1.22506 0.98490 0.88080 0.91120 0.89942 0.93773 0.92239 0.89642 0.93739 0.90071 0.92264 0.88449 0.88130 0.87127 0.78102 0.90557 0.90381 0.78999 0.93496 0.90105 0.92863 0.92829 0.92738 0.93511 0.90669 0.90184 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.18 71.98 0.66 -2.23 16 2 C -0.02 -0.63 3.24 -11.54 -0.04 -0.66 16 3 C -0.13 -2.79 9.18 71.98 0.66 -2.13 16 4 C 0.12 3.63 5.76 43.51 0.25 3.88 16 5 N -0.31 -8.71 12.50 -46.68 -0.58 -9.29 16 6 N -0.36 -8.52 3.98 -367.77 -1.46 -9.99 16 7 C 0.09 1.22 11.44 127.77 1.46 2.69 16 8 C 0.11 2.72 9.51 84.28 0.80 3.52 16 9 C -0.31 -9.34 5.76 -20.15 -0.12 -9.45 16 10 C 0.61 20.00 7.69 86.67 0.67 20.66 16 11 O -0.58 -21.34 15.68 -4.05 -0.06 -21.41 16 12 N -0.61 -18.16 3.32 -811.37 -2.69 -20.85 16 13 C 0.08 2.54 5.61 86.53 0.49 3.03 16 14 C 0.18 5.96 3.35 45.90 0.15 6.12 16 15 H 0.05 2.03 7.66 -2.39 -0.02 2.01 16 16 N -0.74 -30.31 4.40 -318.66 -1.40 -31.71 16 17 C -0.23 -11.70 10.44 84.03 0.88 -10.82 16 18 H 0.06 3.37 8.06 -2.91 -0.02 3.34 16 19 C -0.06 -3.08 5.50 84.86 0.47 -2.61 16 20 N -0.98 -59.63 13.97 21.65 0.30 -59.32 16 21 Si 0.94 42.01 27.73 68.60 1.90 43.91 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.24 -9.60 6.52 99.48 0.65 -8.95 16 25 C -0.08 -2.28 1.03 -51.27 -0.05 -2.33 16 26 C -0.13 -3.49 7.11 71.98 0.51 -2.97 16 27 C -0.13 -3.19 8.23 71.98 0.59 -2.60 16 28 C 0.12 3.20 6.14 86.50 0.53 3.73 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 2.48 6.31 -2.39 -0.02 2.47 16 33 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.20 4.26 6.57 -2.91 -0.02 4.25 16 40 H 0.08 2.29 5.57 -2.39 -0.01 2.28 16 41 H 0.08 2.37 8.06 -2.39 -0.02 2.35 16 42 H 0.37 14.63 2.95 -92.71 -0.27 14.36 16 43 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 44 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 1.43 6.86 -2.39 -0.02 1.41 16 46 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 47 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 50 H 0.08 1.96 7.85 -2.38 -0.02 1.94 16 51 H 0.08 2.21 7.64 -2.39 -0.02 2.19 16 Total: -1.00 -70.23 401.00 4.50 -65.73 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.58 Total: 35.13 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 7.91 Total: 7.80 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.84 Total: -131.16 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.06 Total: -21.41 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.90 Total: 43.91 kcal Total: -70.23 4.50 -65.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996609540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.705 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds