Wall clock time and date at job start Tue Mar 31 2020 18:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47217 * 2 1 4 4 N 1.30499 * 125.65047 * 270.04351 * 3 2 1 5 5 C 1.34134 * 109.25664 * 179.97438 * 4 3 2 6 6 C 1.34667 * 108.02066 * 359.73474 * 5 4 3 7 7 N 1.35041 * 125.65063 * 90.00094 * 3 2 1 8 8 C 1.46500 * 126.39877 * 0.03673 * 7 3 2 9 9 H 1.08998 * 109.46845 * 0.02562 * 8 7 3 10 10 C 1.52997 * 109.47473 * 240.00115 * 8 7 3 11 11 C 1.53006 * 109.47249 * 119.99816 * 8 7 3 12 12 C 1.50695 * 109.47196 * 185.00107 * 11 8 7 13 13 O 1.21283 * 120.00019 * 0.02562 * 12 11 8 14 14 N 1.34778 * 120.00071 * 179.97438 * 12 11 8 15 15 C 1.46930 * 120.62881 * 359.72367 * 14 12 11 16 16 C 1.52753 * 109.00831 * 233.58097 * 15 14 12 17 17 C 1.53041 * 109.38685 * 305.58935 * 16 15 14 18 18 N 1.46498 * 109.45056 * 181.25623 * 17 16 15 19 19 C 1.36936 * 120.00414 * 84.93921 * 18 17 16 20 20 H 1.07999 * 119.99780 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00174 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00199 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99892 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47403 * 89.99945 * 23 21 19 25 25 H 1.48503 * 109.46858 * 210.00164 * 23 21 19 26 26 H 1.48496 * 109.47079 * 329.99397 * 23 21 19 27 27 C 1.53040 * 109.53421 * 61.23726 * 17 16 15 28 28 C 1.46925 * 120.63175 * 180.02562 * 14 12 11 29 29 H 1.09003 * 109.46899 * 299.99546 * 1 2 3 30 30 H 1.08996 * 109.47616 * 59.99654 * 1 2 3 31 31 H 1.09007 * 109.47146 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46828 * 239.99924 * 2 1 3 33 33 H 1.08996 * 109.47616 * 120.00346 * 2 1 3 34 34 H 1.07999 * 125.98695 * 180.02562 * 5 4 3 35 35 H 1.07999 * 126.59614 * 180.28277 * 6 5 4 36 36 H 1.09002 * 109.47153 * 59.99757 * 10 8 7 37 37 H 1.09001 * 109.46832 * 299.99948 * 10 8 7 38 38 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 39 39 H 1.09007 * 109.47135 * 305.00453 * 11 8 7 40 40 H 1.08996 * 109.46945 * 64.99960 * 11 8 7 41 41 H 1.09006 * 109.58429 * 353.41707 * 15 14 12 42 42 H 1.09006 * 109.58461 * 113.84049 * 15 14 12 43 43 H 1.08999 * 109.56620 * 185.55385 * 16 15 14 44 44 H 1.09003 * 109.38702 * 65.51964 * 16 15 14 45 45 H 1.09000 * 109.45919 * 301.22341 * 17 16 15 46 46 H 0.97006 * 119.99439 * 264.93515 * 18 17 16 47 47 H 0.96998 * 120.00062 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.49568 * 178.68798 * 27 17 16 49 49 H 1.09002 * 109.52490 * 58.60964 * 27 17 16 50 50 H 1.09001 * 109.58997 * 246.15713 * 28 14 12 51 51 H 1.09000 * 109.58819 * 6.44493 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1381 -1.0604 5 6 2.7138 3.3514 -0.6818 6 6 2.7216 3.3892 0.6643 7 7 2.2947 2.1628 1.0973 8 6 2.1449 1.7369 2.4910 9 1 1.7827 0.7093 2.5199 10 6 1.1433 2.6513 3.1990 11 6 3.4993 1.8197 3.1980 12 6 3.3719 1.2665 4.5940 13 8 2.3033 0.8468 4.9848 14 7 4.4458 1.2372 5.4078 15 6 5.7488 1.7353 4.9462 16 6 6.8010 0.6489 5.1602 17 6 6.7808 0.2034 6.6241 18 7 7.8099 -0.8172 6.8377 19 6 9.1000 -0.4436 7.1044 20 1 9.3590 0.6036 7.1570 21 6 10.0749 -1.4106 7.3073 22 7 11.3149 -1.0515 7.5632 23 14 9.6270 -3.2219 7.2157 24 1 9.7926 -3.7028 5.8206 25 1 10.5173 -3.9980 8.1159 26 1 8.2152 -3.4046 7.6381 27 6 5.4068 -0.3791 6.9629 28 6 4.3375 0.7003 6.7712 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9980 4.1583 -1.3411 35 1 3.0110 4.2256 1.2832 36 1 0.1784 2.5923 2.6954 37 1 1.5060 3.6788 3.1701 38 1 1.0315 2.3341 4.2359 39 1 4.2354 1.2384 2.6425 40 1 3.8203 2.8602 3.2474 41 1 5.6908 1.9823 3.8861 42 1 6.0232 2.6232 5.5160 43 1 7.7871 1.0421 4.9132 44 1 6.5776 -0.2027 4.5176 45 1 6.9804 1.0605 7.2673 46 1 7.5773 -1.7578 6.7902 47 1 11.9961 -1.7273 7.7053 48 1 5.4005 -0.7176 7.9990 49 1 5.1956 -1.2213 6.3038 50 1 4.4943 1.5018 7.4931 51 1 3.3479 0.2669 6.9157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996611165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:37 Heat of formation + Delta-G solvation = 30.240719 kcal Electronic energy + Delta-G solvation = -29409.727741 eV Core-core repulsion = 25538.137099 eV Total energy + Delta-G solvation = -3871.590641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -42.43100 -40.42101 -37.89391 -35.89128 -34.77195 -34.08261 -32.30263 -31.49502 -30.71109 -29.98403 -28.85343 -28.26020 -25.11938 -24.18558 -23.54320 -23.05685 -22.28381 -21.25891 -20.43859 -19.58010 -18.97321 -17.95580 -17.53786 -16.65205 -16.14802 -15.94791 -15.45781 -15.11960 -14.94007 -14.50887 -14.31304 -14.20040 -13.97712 -13.81540 -13.74364 -13.66791 -13.40760 -13.13905 -13.08471 -12.61187 -12.55407 -12.29126 -12.13984 -11.98924 -11.93156 -11.82480 -11.58140 -11.35863 -11.16431 -11.10780 -11.00618 -10.66326 -10.33911 -10.22031 -10.00273 -9.93362 -9.79239 -9.67567 -9.02418 -8.73797 -8.56008 -7.38069 -5.85785 -3.22331 1.82278 2.36198 2.37402 2.93503 2.97861 3.30996 3.34096 3.39668 4.05913 4.13076 4.25086 4.35635 4.51160 4.54193 4.67559 4.82703 4.88753 4.94658 4.95526 5.01754 5.09308 5.10867 5.12024 5.20101 5.30179 5.33953 5.36629 5.40705 5.46139 5.49275 5.52828 5.56238 5.71298 5.72127 5.76505 5.83771 5.86780 5.97538 6.03095 6.13250 6.14183 6.25520 6.37542 6.57559 6.66544 6.80987 6.97386 7.24745 7.88847 7.92536 7.93853 8.33115 9.10828 9.83642 10.02865 11.32264 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.002443 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.333106 B =11458.156418 C =11776.679288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C 0.210 3.790 4 N -0.493 5.493 5 C -0.030 4.030 6 C -0.056 4.056 7 N -0.448 5.448 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.164 4.164 11 C -0.152 4.152 12 C 0.521 3.479 13 O -0.547 6.547 14 N -0.602 5.602 15 C 0.105 3.895 16 C -0.153 4.153 17 C 0.184 3.816 18 N -0.748 5.748 19 C -0.247 4.247 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.143 4.143 28 C 0.116 3.884 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.078 0.922 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 7.996 -11.170 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.052 4.052 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.131 5.131 8 C 0.043 3.957 9 H 0.129 0.871 10 C -0.222 4.222 11 C -0.192 4.192 12 C 0.309 3.691 13 O -0.426 6.426 14 N -0.335 5.335 15 C -0.018 4.018 16 C -0.194 4.194 17 C 0.074 3.926 18 N -0.390 5.390 19 C -0.377 4.377 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.579 5.579 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.203 1.203 27 C -0.182 4.182 28 C -0.006 4.006 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.081 0.919 50 H 0.088 0.912 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.938 7.604 -11.547 25.931 hybrid contribution 0.339 -0.850 0.732 1.172 sum -21.599 6.755 -10.815 25.081 Atomic orbital electron populations 1.21738 0.93895 1.02344 1.02459 1.19990 0.96502 0.87500 1.04084 1.23269 1.03975 0.96617 0.81352 1.70243 1.18300 1.04312 1.28256 1.22263 1.06521 0.96228 0.92770 1.22605 1.09599 0.89972 0.96740 1.45607 1.48895 1.11597 1.07042 1.21170 0.95433 1.01522 0.77527 0.87149 1.22268 0.98146 0.98772 1.02969 1.22026 0.98569 1.04201 0.94419 1.20146 0.83798 0.78686 0.86493 1.90664 1.27048 1.48513 1.76344 1.48176 1.09603 1.61188 1.14494 1.21833 0.82358 0.97868 0.99718 1.22577 0.98211 0.97616 1.00969 1.20128 0.86942 0.92564 0.92956 1.42791 1.06420 1.03254 1.86507 1.19045 0.83092 0.94629 1.40911 0.89176 1.24678 0.95332 0.97430 1.01549 1.69693 1.00819 1.32650 1.54767 0.86560 0.77470 0.86829 0.77698 1.21098 1.21691 1.20335 1.22243 0.95389 0.98040 1.02515 1.21621 1.00558 0.96731 0.81717 0.92803 0.91901 0.91547 0.88671 0.90386 0.81493 0.81198 0.91990 0.92247 0.88382 0.87982 0.88031 0.90426 0.90965 0.89938 0.92302 0.92484 0.80622 0.92971 0.90360 0.91947 0.91229 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.04 -0.35 6.08 -27.89 -0.17 -0.52 16 3 C 0.21 2.27 7.16 -155.42 -1.11 1.15 16 4 N -0.49 -6.18 11.25 -10.82 -0.12 -6.30 16 5 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 6 C -0.06 -0.51 10.70 -16.56 -0.18 -0.69 16 7 N -0.45 -4.24 2.61 -106.83 -0.28 -4.52 16 8 C 0.15 1.26 2.64 -67.93 -0.18 1.08 16 9 H 0.11 1.01 6.48 -51.93 -0.34 0.67 16 10 C -0.16 -1.34 8.99 37.16 0.33 -1.01 16 11 C -0.15 -1.28 3.54 -27.88 -0.10 -1.38 16 12 C 0.52 5.79 7.41 -10.99 -0.08 5.70 16 13 O -0.55 -7.33 13.38 5.56 0.07 -7.25 16 14 N -0.60 -6.85 2.98 -173.06 -0.52 -7.36 16 15 C 0.11 1.14 6.31 -3.93 -0.02 1.11 16 16 C -0.15 -2.24 5.64 -26.84 -0.15 -2.39 16 17 C 0.18 3.13 2.73 -67.89 -0.19 2.94 16 18 N -0.75 -16.52 4.92 -53.39 -0.26 -16.78 16 19 C -0.25 -6.60 10.41 -15.06 -0.16 -6.75 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 23 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 27 C -0.14 -2.03 5.55 -26.63 -0.15 -2.17 16 28 C 0.12 1.39 6.43 -3.73 -0.02 1.37 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.58 7.08 -51.93 -0.37 0.21 16 34 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 38 H 0.10 0.94 5.95 -51.93 -0.31 0.63 16 39 H 0.10 0.87 7.68 -51.93 -0.40 0.48 16 40 H 0.10 0.70 7.90 -51.93 -0.41 0.29 16 41 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 46 H 0.36 7.98 5.66 -40.82 -0.23 7.75 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.09 1.11 7.00 -51.93 -0.36 0.75 16 LS Contribution 400.19 15.07 6.03 6.03 Total: -1.00 -32.84 400.19 -9.77 -42.61 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -8.64 Total: 7.15 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -2.11 Total: -2.69 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: -0.40 Total: -62.64 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.07 Total: -7.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.84 -9.77 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996611165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.850 kcal (2) G-P(sol) polarization free energy of solvation -32.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds