Wall clock time and date at job start Tue Mar 31 2020 18:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47217 * 2 1 4 4 N 1.30499 * 125.65047 * 270.04351 * 3 2 1 5 5 C 1.34134 * 109.25664 * 179.97438 * 4 3 2 6 6 C 1.34667 * 108.02066 * 359.73474 * 5 4 3 7 7 N 1.35041 * 125.65063 * 90.00094 * 3 2 1 8 8 C 1.46500 * 126.39877 * 0.03673 * 7 3 2 9 9 H 1.08998 * 109.46845 * 0.02562 * 8 7 3 10 10 C 1.52997 * 109.47473 * 240.00115 * 8 7 3 11 11 C 1.53006 * 109.47249 * 119.99816 * 8 7 3 12 12 C 1.50695 * 109.47196 * 185.00107 * 11 8 7 13 13 O 1.21283 * 120.00019 * 0.02562 * 12 11 8 14 14 N 1.34778 * 120.00071 * 179.97438 * 12 11 8 15 15 C 1.46930 * 120.62881 * 359.72367 * 14 12 11 16 16 C 1.52753 * 109.00831 * 233.58097 * 15 14 12 17 17 C 1.53041 * 109.38685 * 305.58935 * 16 15 14 18 18 N 1.46498 * 109.45056 * 181.25623 * 17 16 15 19 19 C 1.36936 * 120.00414 * 84.93921 * 18 17 16 20 20 H 1.07999 * 119.99780 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00174 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00199 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99892 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47403 * 89.99945 * 23 21 19 25 25 H 1.48503 * 109.46858 * 210.00164 * 23 21 19 26 26 H 1.48496 * 109.47079 * 329.99397 * 23 21 19 27 27 C 1.53040 * 109.53421 * 61.23726 * 17 16 15 28 28 C 1.46925 * 120.63175 * 180.02562 * 14 12 11 29 29 H 1.09003 * 109.46899 * 299.99546 * 1 2 3 30 30 H 1.08996 * 109.47616 * 59.99654 * 1 2 3 31 31 H 1.09007 * 109.47146 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46828 * 239.99924 * 2 1 3 33 33 H 1.08996 * 109.47616 * 120.00346 * 2 1 3 34 34 H 1.07999 * 125.98695 * 180.02562 * 5 4 3 35 35 H 1.07999 * 126.59614 * 180.28277 * 6 5 4 36 36 H 1.09002 * 109.47153 * 59.99757 * 10 8 7 37 37 H 1.09001 * 109.46832 * 299.99948 * 10 8 7 38 38 H 1.09004 * 109.47261 * 179.97438 * 10 8 7 39 39 H 1.09007 * 109.47135 * 305.00453 * 11 8 7 40 40 H 1.08996 * 109.46945 * 64.99960 * 11 8 7 41 41 H 1.09006 * 109.58429 * 353.41707 * 15 14 12 42 42 H 1.09006 * 109.58461 * 113.84049 * 15 14 12 43 43 H 1.08999 * 109.56620 * 185.55385 * 16 15 14 44 44 H 1.09003 * 109.38702 * 65.51964 * 16 15 14 45 45 H 1.09000 * 109.45919 * 301.22341 * 17 16 15 46 46 H 0.97006 * 119.99439 * 264.93515 * 18 17 16 47 47 H 0.96998 * 120.00062 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.49568 * 178.68798 * 27 17 16 49 49 H 1.09002 * 109.52490 * 58.60964 * 27 17 16 50 50 H 1.09001 * 109.58997 * 246.15713 * 28 14 12 51 51 H 1.09000 * 109.58819 * 6.44493 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1381 -1.0604 5 6 2.7138 3.3514 -0.6818 6 6 2.7216 3.3892 0.6643 7 7 2.2947 2.1628 1.0973 8 6 2.1449 1.7369 2.4910 9 1 1.7827 0.7093 2.5199 10 6 1.1433 2.6513 3.1990 11 6 3.4993 1.8197 3.1980 12 6 3.3719 1.2665 4.5940 13 8 2.3033 0.8468 4.9848 14 7 4.4458 1.2372 5.4078 15 6 5.7488 1.7353 4.9462 16 6 6.8010 0.6489 5.1602 17 6 6.7808 0.2034 6.6241 18 7 7.8099 -0.8172 6.8377 19 6 9.1000 -0.4436 7.1044 20 1 9.3590 0.6036 7.1570 21 6 10.0749 -1.4106 7.3073 22 7 11.3149 -1.0515 7.5632 23 14 9.6270 -3.2219 7.2157 24 1 9.7926 -3.7028 5.8206 25 1 10.5173 -3.9980 8.1159 26 1 8.2152 -3.4046 7.6381 27 6 5.4068 -0.3791 6.9629 28 6 4.3375 0.7003 6.7712 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.9980 4.1583 -1.3411 35 1 3.0110 4.2256 1.2832 36 1 0.1784 2.5923 2.6954 37 1 1.5060 3.6788 3.1701 38 1 1.0315 2.3341 4.2359 39 1 4.2354 1.2384 2.6425 40 1 3.8203 2.8602 3.2474 41 1 5.6908 1.9823 3.8861 42 1 6.0232 2.6232 5.5160 43 1 7.7871 1.0421 4.9132 44 1 6.5776 -0.2027 4.5176 45 1 6.9804 1.0605 7.2673 46 1 7.5773 -1.7578 6.7902 47 1 11.9961 -1.7273 7.7053 48 1 5.4005 -0.7176 7.9990 49 1 5.1956 -1.2213 6.3038 50 1 4.4943 1.5018 7.4931 51 1 3.3479 0.2669 6.9157 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996611165.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:35 Heat of formation + Delta-G solvation = 11.062069 kcal Electronic energy + Delta-G solvation = -29410.559389 eV Core-core repulsion = 25538.137099 eV Total energy + Delta-G solvation = -3872.422290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.15285 -41.34287 -39.02354 -36.71542 -36.21794 -34.71030 -33.98585 -32.58275 -31.62893 -31.45701 -29.53503 -29.05500 -26.51434 -24.87826 -24.40854 -24.30278 -23.51690 -22.13754 -21.59655 -20.41119 -20.01316 -19.38214 -18.64679 -17.51330 -16.99883 -16.79381 -16.68952 -16.21996 -15.91120 -15.77828 -15.20730 -15.13430 -15.05668 -14.96407 -14.64340 -14.58356 -14.39154 -14.23618 -14.06214 -13.86868 -13.51521 -13.32210 -13.19765 -12.95819 -12.83865 -12.67226 -12.54511 -12.49733 -12.22029 -12.17183 -12.07088 -12.01273 -11.96856 -11.79501 -11.34415 -11.08663 -10.93745 -10.75751 -10.57360 -9.70325 -9.31496 -9.27183 -8.02233 -5.35168 1.11382 1.37392 1.39342 1.46834 1.52449 1.62106 2.11107 2.20998 2.47857 3.29320 3.38038 3.41311 3.51428 3.54829 3.69788 3.85378 3.90874 4.03576 4.04816 4.16208 4.23155 4.30826 4.34797 4.38393 4.39754 4.47056 4.50265 4.58878 4.68050 4.69114 4.72999 4.79714 4.80713 4.84593 4.87323 4.97939 4.99328 5.05077 5.07779 5.18457 5.26125 5.27613 5.43676 5.45386 5.59197 5.78092 5.88603 6.22085 6.26660 6.36290 7.07064 7.08182 7.19206 7.85132 8.02472 9.19102 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.002443 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.333106 B =11458.156418 C =11776.679288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.196 3.804 4 N -0.530 5.530 5 C -0.055 4.055 6 C -0.048 4.048 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.104 0.896 10 C -0.157 4.157 11 C -0.144 4.144 12 C 0.523 3.477 13 O -0.569 6.569 14 N -0.604 5.604 15 C 0.115 3.885 16 C -0.145 4.145 17 C 0.175 3.825 18 N -0.754 5.754 19 C -0.223 4.223 20 H 0.062 0.938 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.951 3.049 24 H -0.282 1.282 25 H -0.299 1.299 26 H -0.253 1.253 27 C -0.132 4.132 28 C 0.122 3.878 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.181 0.819 35 H 0.201 0.799 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.363 0.637 47 H 0.256 0.744 48 H 0.077 0.923 49 H 0.058 0.942 50 H 0.082 0.918 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.520 8.356 -11.559 27.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.067 4.067 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.180 4.180 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.122 0.878 10 C -0.215 4.215 11 C -0.184 4.184 12 C 0.312 3.688 13 O -0.450 6.450 14 N -0.336 5.336 15 C -0.008 4.008 16 C -0.186 4.186 17 C 0.067 3.933 18 N -0.396 5.396 19 C -0.354 4.354 20 H 0.080 0.920 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.779 3.221 24 H -0.208 1.208 25 H -0.226 1.226 26 H -0.177 1.177 27 C -0.171 4.171 28 C -0.001 4.001 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.198 0.802 35 H 0.218 0.782 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.195 0.805 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.077 0.923 50 H 0.100 0.900 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.999 7.989 -11.955 27.977 hybrid contribution 0.906 -0.852 0.845 1.504 sum -23.092 7.137 -11.110 26.601 Atomic orbital electron populations 1.21688 0.93215 1.03181 1.01735 1.20077 0.97053 0.86572 1.04467 1.23631 1.04130 0.97400 0.81497 1.70206 1.19554 1.05556 1.29593 1.22652 1.07342 0.96225 0.94020 1.23062 1.08087 0.90297 0.96600 1.45658 1.48572 1.11655 1.07012 1.21138 0.95690 1.01343 0.77090 0.87822 1.22183 0.98013 0.99327 1.01933 1.22001 0.98519 1.05476 0.92453 1.20512 0.83160 0.78020 0.87118 1.90669 1.27938 1.49430 1.76934 1.48201 1.09886 1.61258 1.14301 1.21791 0.80737 0.96447 1.01815 1.22370 0.98754 0.98759 0.98669 1.20414 0.87143 0.91321 0.94402 1.42858 1.05725 1.04458 1.86564 1.19020 0.84989 0.93251 1.38165 0.92049 1.25450 0.95296 1.02106 1.02752 1.69868 1.02141 1.33895 1.57555 0.85472 0.78168 0.81067 0.77422 1.20844 1.22619 1.17743 1.22108 0.94086 0.98550 1.02358 1.21523 0.99497 0.96421 0.82634 0.93070 0.92978 0.89937 0.88751 0.89478 0.80176 0.78211 0.92262 0.90924 0.89624 0.87569 0.85665 0.87555 0.89666 0.91968 0.92771 0.93262 0.80452 0.93480 0.90435 0.92302 0.89954 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.89 71.98 0.71 -1.18 16 2 C -0.04 -0.67 6.08 29.85 0.18 -0.49 16 3 C 0.20 3.99 7.16 138.13 0.99 4.98 16 4 N -0.53 -12.92 11.25 -188.13 -2.12 -15.03 16 5 C -0.06 -1.08 11.87 83.52 0.99 -0.09 16 6 C -0.05 -0.73 10.70 83.08 0.89 0.16 16 7 N -0.45 -7.42 2.61 -491.91 -1.28 -8.70 16 8 C 0.15 2.18 2.64 44.99 0.12 2.30 16 9 H 0.10 1.68 6.48 -2.39 -0.02 1.66 16 10 C -0.16 -2.17 8.99 71.98 0.65 -1.52 16 11 C -0.14 -1.91 3.54 29.85 0.11 -1.81 16 12 C 0.52 9.97 7.41 87.66 0.65 10.62 16 13 O -0.57 -13.87 13.38 -3.04 -0.04 -13.91 16 14 N -0.60 -11.84 2.98 -819.81 -2.44 -14.28 16 15 C 0.11 2.11 6.31 86.22 0.54 2.65 16 16 C -0.14 -4.01 5.64 30.53 0.17 -3.83 16 17 C 0.17 5.73 2.73 45.02 0.12 5.85 16 18 N -0.75 -32.66 4.92 -322.82 -1.59 -34.25 16 19 C -0.22 -12.04 10.41 84.03 0.87 -11.17 16 20 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.98 -61.69 13.97 21.65 0.30 -61.39 16 23 Si 0.95 44.52 27.74 68.60 1.90 46.42 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 26 H -0.25 -10.65 6.52 99.48 0.65 -10.00 16 27 C -0.13 -3.48 5.55 30.66 0.17 -3.31 16 28 C 0.12 2.61 6.43 86.35 0.56 3.16 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.09 1.17 7.08 -2.39 -0.02 1.15 16 34 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 35 H 0.20 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.80 7.95 -2.39 -0.02 0.78 16 38 H 0.09 1.46 5.95 -2.38 -0.01 1.44 16 39 H 0.11 1.41 7.68 -2.38 -0.02 1.39 16 40 H 0.13 1.11 7.90 -2.39 -0.02 1.10 16 41 H 0.11 1.40 5.93 -2.38 -0.01 1.39 16 42 H 0.09 1.41 8.14 -2.38 -0.02 1.40 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 46 H 0.36 15.42 5.66 -92.70 -0.52 14.90 16 47 H 0.26 15.42 8.31 -92.71 -0.77 14.64 16 48 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 49 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.09 2.01 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -72.56 400.19 3.25 -69.31 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.33 Total: 28.74 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 8.19 Total: 3.09 kcal Atomic # 7 Polarization: -126.52 SS G_CDS: -7.13 Total: -133.65 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.04 Total: -13.91 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.42 kcal Total: -72.56 3.25 -69.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996611165.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.367 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds