Wall clock time and date at job start Tue Mar 31 2020 18:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47340 * 2 1 4 4 N 1.30503 * 125.64576 * 270.00241 * 3 2 1 5 5 C 1.34129 * 109.25413 * 179.97438 * 4 3 2 6 6 C 1.34668 * 108.02266 * 359.97438 * 5 4 3 7 7 N 1.35043 * 125.65346 * 89.99717 * 3 2 1 8 8 C 1.46503 * 126.39568 * 0.26119 * 7 3 2 9 9 H 1.09002 * 109.46945 * 359.71876 * 8 7 3 10 10 C 1.52997 * 109.46719 * 119.71669 * 8 7 3 11 11 C 1.53001 * 109.47107 * 239.71424 * 8 7 3 12 12 C 1.50699 * 109.46888 * 175.00091 * 11 8 7 13 13 O 1.21284 * 119.99989 * 359.97438 * 12 11 8 14 14 N 1.34774 * 120.00277 * 180.02562 * 12 11 8 15 15 C 1.46931 * 120.62792 * 359.72020 * 14 12 11 16 16 C 1.53621 * 108.54596 * 126.36634 * 15 14 12 17 17 C 1.53043 * 109.23560 * 54.85946 * 16 15 14 18 18 N 1.46509 * 109.45792 * 178.49267 * 17 16 15 19 19 C 1.36936 * 119.99586 * 275.06499 * 18 17 16 20 20 H 1.08001 * 120.00518 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99751 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00327 * 0.02562 * 21 19 18 24 24 H 1.48508 * 109.47055 * 89.99459 * 23 21 19 25 25 H 1.48491 * 109.47396 * 209.99545 * 23 21 19 26 26 H 1.48503 * 109.46804 * 330.00099 * 23 21 19 27 27 C 1.53045 * 109.53957 * 298.50556 * 17 16 15 28 28 C 1.46924 * 120.63418 * 180.02562 * 14 12 11 29 29 H 1.08996 * 109.47140 * 300.00298 * 1 2 3 30 30 H 1.09001 * 109.47248 * 60.00257 * 1 2 3 31 31 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47577 * 239.99545 * 2 1 3 33 33 H 1.09001 * 109.47248 * 119.99743 * 2 1 3 34 34 H 1.08001 * 125.99326 * 179.97438 * 5 4 3 35 35 H 1.07999 * 126.59453 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47239 * 299.99442 * 10 8 7 37 37 H 1.08993 * 109.47772 * 60.00240 * 10 8 7 38 38 H 1.09005 * 109.47181 * 180.02562 * 10 8 7 39 39 H 1.08994 * 109.47264 * 294.99898 * 11 8 7 40 40 H 1.09006 * 109.46892 * 55.00626 * 11 8 7 41 41 H 1.09000 * 109.58884 * 246.20794 * 15 14 12 42 42 H 1.09004 * 109.58546 * 6.62607 * 15 14 12 43 43 H 1.08997 * 109.63758 * 294.86900 * 16 15 14 44 44 H 1.08997 * 109.45694 * 174.74060 * 16 15 14 45 45 H 1.08998 * 109.45542 * 58.52625 * 17 16 15 46 46 H 0.96995 * 120.00323 * 95.06339 * 18 17 16 47 47 H 0.97005 * 119.99354 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.49810 * 301.42083 * 27 17 16 49 49 H 1.08997 * 109.52358 * 181.33418 * 27 17 16 50 50 H 1.08995 * 109.58591 * 353.37511 * 28 14 12 51 51 H 1.08998 * 109.58338 * 113.65540 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2858 2.1378 -1.0605 5 6 2.7143 3.3512 -0.6820 6 6 2.7262 3.3876 0.6641 7 7 2.2947 2.1629 1.0973 8 6 2.1492 1.7355 2.4910 9 1 1.7850 0.7085 2.5199 10 6 3.5061 1.8154 3.1932 11 6 1.1515 2.6507 3.2036 12 6 0.9086 2.1384 4.5999 13 8 1.4771 1.1393 4.9867 14 7 0.0588 2.7898 5.4185 15 6 -0.6335 4.0042 4.9659 16 6 -2.1426 3.8158 5.1825 17 6 -2.4006 3.4546 6.6472 18 7 -3.8417 3.3090 6.8674 19 6 -4.6074 4.4112 7.1395 20 1 -4.1491 5.3878 7.1913 21 6 -5.9729 4.2734 7.3477 22 7 -6.7090 5.3329 7.6087 23 14 -6.7658 2.5844 7.2574 24 1 -6.7487 1.9570 8.6034 25 1 -8.1694 2.7207 6.7926 26 1 -6.0092 1.7328 6.3048 27 6 -1.6982 2.1363 6.9806 28 6 -0.1879 2.3028 6.7825 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9997 4.1577 -1.3412 35 1 3.0204 4.2224 1.2830 36 1 4.2169 1.1634 2.6856 37 1 3.8703 2.8423 3.1643 38 1 3.3980 1.4970 4.2301 39 1 1.5565 3.6614 3.2528 40 1 0.2112 2.6624 2.6522 41 1 -0.2830 4.8607 5.5417 42 1 -0.4324 4.1662 3.9069 43 1 -2.5076 3.0142 4.5404 44 1 -2.6628 4.7422 4.9392 45 1 -2.0131 4.2452 7.2897 46 1 -4.2533 2.4320 6.8205 47 1 -7.6631 5.2364 7.7546 48 1 -2.0674 1.3505 6.3215 49 1 -1.9016 1.8672 8.0171 50 1 0.3073 1.3421 6.9227 51 1 0.2004 3.0226 7.5032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996611168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:48 Heat of formation + Delta-G solvation = 30.301458 kcal Electronic energy + Delta-G solvation = -29541.241044 eV Core-core repulsion = 25669.653036 eV Total energy + Delta-G solvation = -3871.588008 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 5.67 seconds Orbital eigenvalues (eV) -42.42982 -40.41222 -37.87229 -35.88989 -34.77245 -34.06625 -32.30235 -31.47634 -30.68655 -29.96487 -28.84577 -28.25133 -25.12377 -24.18672 -23.51270 -23.06619 -22.28954 -21.24889 -20.43907 -19.58932 -18.97136 -17.96539 -17.53542 -16.62030 -16.14737 -15.93621 -15.50163 -15.11321 -14.93488 -14.49176 -14.27314 -14.18045 -13.95258 -13.88585 -13.71385 -13.65403 -13.43717 -13.10886 -13.07502 -12.59495 -12.54179 -12.28905 -12.13939 -11.98232 -11.90460 -11.82772 -11.56409 -11.34624 -11.18308 -11.09084 -11.01160 -10.67876 -10.34277 -10.21781 -10.01038 -9.92501 -9.79147 -9.67422 -9.02256 -8.73753 -8.55807 -7.38058 -5.85886 -3.22390 1.82308 2.36255 2.37675 2.94079 2.97263 3.30948 3.33990 3.39614 4.05789 4.13464 4.25056 4.36308 4.51105 4.54570 4.67289 4.83497 4.89341 4.94279 4.97933 5.02080 5.09042 5.10372 5.13293 5.19759 5.30477 5.32095 5.36805 5.41396 5.48613 5.51001 5.52678 5.57693 5.71520 5.72265 5.76602 5.84093 5.91633 5.96855 6.03033 6.13090 6.14330 6.25292 6.37893 6.57637 6.66491 6.81052 6.97466 7.24690 7.88785 7.92611 7.93913 8.33066 9.10782 9.83573 10.02793 11.32180 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.002575 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.420181 B =10871.819905 C =11402.434376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.210 3.790 4 N -0.493 5.493 5 C -0.030 4.030 6 C -0.057 4.057 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.165 4.165 11 C -0.151 4.151 12 C 0.521 3.479 13 O -0.547 6.547 14 N -0.602 5.602 15 C 0.105 3.895 16 C -0.152 4.152 17 C 0.184 3.816 18 N -0.748 5.748 19 C -0.247 4.247 20 H 0.090 0.910 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.143 4.143 28 C 0.116 3.884 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.168 0.832 35 H 0.171 0.829 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.936 -7.042 -11.268 24.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.052 4.052 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.131 5.131 8 C 0.043 3.957 9 H 0.129 0.871 10 C -0.222 4.222 11 C -0.191 4.191 12 C 0.309 3.691 13 O -0.426 6.426 14 N -0.335 5.335 15 C -0.019 4.019 16 C -0.193 4.193 17 C 0.074 3.926 18 N -0.390 5.390 19 C -0.377 4.377 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.182 4.182 28 C -0.006 4.006 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.185 0.815 35 H 0.188 0.812 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.108 0.892 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.014 -7.610 -11.651 25.204 hybrid contribution -0.773 -0.447 0.720 1.147 sum 20.241 -8.057 -10.931 24.374 Atomic orbital electron populations 1.21746 0.93750 1.02458 1.02611 1.19990 0.96584 0.87463 1.03942 1.23280 1.03936 0.96657 0.81349 1.70243 1.18315 1.04304 1.28250 1.22262 1.06524 0.96229 0.92767 1.22605 1.09571 0.90012 0.96742 1.45608 1.48731 1.11760 1.07042 1.21169 0.97199 0.99769 0.77516 0.87144 1.22274 0.94388 1.02551 1.03021 1.22017 1.01479 1.01263 0.94384 1.20147 0.78942 0.83542 0.86503 1.90664 1.49675 1.25664 1.76570 1.48175 1.43201 1.27647 1.14454 1.22018 0.93926 0.86123 0.99790 1.22727 0.92509 1.03083 1.00935 1.20137 0.84929 0.94600 0.92950 1.42796 1.03015 1.06864 1.86297 1.19048 0.89840 0.88136 1.40643 0.89175 1.24682 0.96172 0.96600 1.01545 1.69702 1.05965 1.27618 1.54662 0.86559 0.78983 0.85130 0.77864 1.21034 1.21706 1.20396 1.22258 0.93908 0.99518 1.02491 1.21636 0.96491 1.00819 0.81675 0.92817 0.91769 0.91498 0.88741 0.90419 0.81494 0.81201 0.91971 0.92235 0.88381 0.88053 0.88011 0.90912 0.90429 0.92273 0.90039 0.92457 0.80624 0.92975 0.91936 0.90343 0.89161 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.89 37.16 0.37 -0.83 16 2 C -0.04 -0.34 6.08 -27.89 -0.17 -0.51 16 3 C 0.21 2.27 7.16 -155.41 -1.11 1.16 16 4 N -0.49 -6.19 11.25 -10.81 -0.12 -6.31 16 5 C -0.03 -0.31 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.51 10.70 -16.56 -0.18 -0.69 16 7 N -0.45 -4.25 2.61 -106.83 -0.28 -4.53 16 8 C 0.15 1.26 2.64 -67.93 -0.18 1.09 16 9 H 0.11 1.01 6.48 -51.93 -0.34 0.67 16 10 C -0.16 -1.36 8.99 37.16 0.33 -1.02 16 11 C -0.15 -1.28 3.53 -27.88 -0.10 -1.38 16 12 C 0.52 5.79 7.41 -10.99 -0.08 5.71 16 13 O -0.55 -7.33 13.38 5.55 0.07 -7.26 16 14 N -0.60 -6.84 2.97 -172.48 -0.51 -7.35 16 15 C 0.10 1.13 6.37 -3.48 -0.02 1.11 16 16 C -0.15 -2.23 5.67 -26.39 -0.15 -2.38 16 17 C 0.18 3.12 2.73 -67.88 -0.19 2.93 16 18 N -0.75 -16.49 4.93 -53.38 -0.26 -16.76 16 19 C -0.25 -6.59 10.41 -15.06 -0.16 -6.75 16 20 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 23 Si 0.88 21.49 27.74 -169.99 -4.71 16.77 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 27 C -0.14 -2.01 5.55 -26.59 -0.15 -2.16 16 28 C 0.12 1.39 6.43 -3.69 -0.02 1.37 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.56 7.07 -51.93 -0.37 0.19 16 34 H 0.17 1.37 8.06 -52.49 -0.42 0.94 16 35 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 38 H 0.10 0.95 5.95 -51.93 -0.31 0.64 16 39 H 0.10 0.70 7.88 -51.93 -0.41 0.30 16 40 H 0.10 0.88 7.70 -51.93 -0.40 0.48 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 46 H 0.36 7.97 5.66 -40.82 -0.23 7.74 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -32.82 400.26 -9.76 -42.59 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -8.64 Total: 7.29 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -2.11 Total: -2.80 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.40 Total: -62.62 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.07 Total: -7.26 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.71 Total: 16.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.82 -9.76 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996611168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.888 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.67 seconds