Wall clock time and date at job start Tue Mar 31 2020 18:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50700 * 109.47340 * 2 1 4 4 N 1.30503 * 125.64576 * 270.00241 * 3 2 1 5 5 C 1.34129 * 109.25413 * 179.97438 * 4 3 2 6 6 C 1.34668 * 108.02266 * 359.97438 * 5 4 3 7 7 N 1.35043 * 125.65346 * 89.99717 * 3 2 1 8 8 C 1.46503 * 126.39568 * 0.26119 * 7 3 2 9 9 H 1.09002 * 109.46945 * 359.71876 * 8 7 3 10 10 C 1.52997 * 109.46719 * 119.71669 * 8 7 3 11 11 C 1.53001 * 109.47107 * 239.71424 * 8 7 3 12 12 C 1.50699 * 109.46888 * 175.00091 * 11 8 7 13 13 O 1.21284 * 119.99989 * 359.97438 * 12 11 8 14 14 N 1.34774 * 120.00277 * 180.02562 * 12 11 8 15 15 C 1.46931 * 120.62792 * 359.72020 * 14 12 11 16 16 C 1.53621 * 108.54596 * 126.36634 * 15 14 12 17 17 C 1.53043 * 109.23560 * 54.85946 * 16 15 14 18 18 N 1.46509 * 109.45792 * 178.49267 * 17 16 15 19 19 C 1.36936 * 119.99586 * 275.06499 * 18 17 16 20 20 H 1.08001 * 120.00518 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99751 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99688 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00327 * 0.02562 * 21 19 18 24 24 H 1.48508 * 109.47055 * 89.99459 * 23 21 19 25 25 H 1.48491 * 109.47396 * 209.99545 * 23 21 19 26 26 H 1.48503 * 109.46804 * 330.00099 * 23 21 19 27 27 C 1.53045 * 109.53957 * 298.50556 * 17 16 15 28 28 C 1.46924 * 120.63418 * 180.02562 * 14 12 11 29 29 H 1.08996 * 109.47140 * 300.00298 * 1 2 3 30 30 H 1.09001 * 109.47248 * 60.00257 * 1 2 3 31 31 H 1.09001 * 109.47026 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47577 * 239.99545 * 2 1 3 33 33 H 1.09001 * 109.47248 * 119.99743 * 2 1 3 34 34 H 1.08001 * 125.99326 * 179.97438 * 5 4 3 35 35 H 1.07999 * 126.59453 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47239 * 299.99442 * 10 8 7 37 37 H 1.08993 * 109.47772 * 60.00240 * 10 8 7 38 38 H 1.09005 * 109.47181 * 180.02562 * 10 8 7 39 39 H 1.08994 * 109.47264 * 294.99898 * 11 8 7 40 40 H 1.09006 * 109.46892 * 55.00626 * 11 8 7 41 41 H 1.09000 * 109.58884 * 246.20794 * 15 14 12 42 42 H 1.09004 * 109.58546 * 6.62607 * 15 14 12 43 43 H 1.08997 * 109.63758 * 294.86900 * 16 15 14 44 44 H 1.08997 * 109.45694 * 174.74060 * 16 15 14 45 45 H 1.08998 * 109.45542 * 58.52625 * 17 16 15 46 46 H 0.96995 * 120.00323 * 95.06339 * 18 17 16 47 47 H 0.97005 * 119.99354 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.49810 * 301.42083 * 27 17 16 49 49 H 1.08997 * 109.52358 * 181.33418 * 27 17 16 50 50 H 1.08995 * 109.58591 * 353.37511 * 28 14 12 51 51 H 1.08998 * 109.58338 * 113.65540 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2858 2.1378 -1.0605 5 6 2.7143 3.3512 -0.6820 6 6 2.7262 3.3876 0.6641 7 7 2.2947 2.1629 1.0973 8 6 2.1492 1.7355 2.4910 9 1 1.7850 0.7085 2.5199 10 6 3.5061 1.8154 3.1932 11 6 1.1515 2.6507 3.2036 12 6 0.9086 2.1384 4.5999 13 8 1.4771 1.1393 4.9867 14 7 0.0588 2.7898 5.4185 15 6 -0.6335 4.0042 4.9659 16 6 -2.1426 3.8158 5.1825 17 6 -2.4006 3.4546 6.6472 18 7 -3.8417 3.3090 6.8674 19 6 -4.6074 4.4112 7.1395 20 1 -4.1491 5.3878 7.1913 21 6 -5.9729 4.2734 7.3477 22 7 -6.7090 5.3329 7.6087 23 14 -6.7658 2.5844 7.2574 24 1 -6.7487 1.9570 8.6034 25 1 -8.1694 2.7207 6.7926 26 1 -6.0092 1.7328 6.3048 27 6 -1.6982 2.1363 6.9806 28 6 -0.1879 2.3028 6.7825 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.9997 4.1577 -1.3412 35 1 3.0204 4.2224 1.2830 36 1 4.2169 1.1634 2.6856 37 1 3.8703 2.8423 3.1643 38 1 3.3980 1.4970 4.2301 39 1 1.5565 3.6614 3.2528 40 1 0.2112 2.6624 2.6522 41 1 -0.2830 4.8607 5.5417 42 1 -0.4324 4.1662 3.9069 43 1 -2.5076 3.0142 4.5404 44 1 -2.6628 4.7422 4.9392 45 1 -2.0131 4.2452 7.2897 46 1 -4.2533 2.4320 6.8205 47 1 -7.6631 5.2364 7.7546 48 1 -2.0674 1.3505 6.3215 49 1 -1.9016 1.8672 8.0171 50 1 0.3073 1.3421 6.9227 51 1 0.2004 3.0226 7.5032 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996611168.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:44 Heat of formation + Delta-G solvation = 11.146838 kcal Electronic energy + Delta-G solvation = -29542.071651 eV Core-core repulsion = 25669.653036 eV Total energy + Delta-G solvation = -3872.418614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.15335 -41.33341 -39.00358 -36.71644 -36.21523 -34.71557 -33.98523 -32.56625 -31.58840 -31.45381 -29.54837 -29.04080 -26.50968 -24.92474 -24.38158 -24.29752 -23.52106 -22.12499 -21.59937 -20.44029 -19.99494 -19.38821 -18.65585 -17.48844 -16.98833 -16.78149 -16.68398 -16.27486 -15.90672 -15.77810 -15.20559 -15.10981 -15.06753 -14.93710 -14.62420 -14.58627 -14.39271 -14.29769 -14.07024 -13.82730 -13.50658 -13.31249 -13.20226 -12.95252 -12.84221 -12.66457 -12.54379 -12.51271 -12.21920 -12.18183 -12.13664 -11.98768 -11.95817 -11.79050 -11.34476 -11.07825 -10.94054 -10.76150 -10.57450 -9.70249 -9.31330 -9.27256 -8.02276 -5.35134 1.11176 1.37353 1.39494 1.46782 1.52409 1.62264 2.11078 2.20744 2.47892 3.28989 3.37996 3.40697 3.51551 3.54627 3.70248 3.85481 3.90833 4.04075 4.04329 4.15572 4.22621 4.30784 4.34156 4.38621 4.39681 4.46664 4.49407 4.58294 4.66043 4.67941 4.71899 4.80317 4.82335 4.85290 4.87023 4.96661 4.99055 5.05221 5.06842 5.17928 5.26817 5.27121 5.43587 5.45403 5.59048 5.78107 5.88547 6.22157 6.26565 6.36177 7.07004 7.08233 7.19130 7.85202 8.02536 9.19123 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.002575 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.420181 B =10871.819905 C =11402.434376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.048 4.048 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.104 0.896 10 C -0.158 4.158 11 C -0.144 4.144 12 C 0.523 3.477 13 O -0.569 6.569 14 N -0.605 5.605 15 C 0.115 3.885 16 C -0.144 4.144 17 C 0.175 3.825 18 N -0.754 5.754 19 C -0.223 4.223 20 H 0.062 0.938 21 C -0.065 4.065 22 N -0.984 5.984 23 Si 0.951 3.049 24 H -0.280 1.280 25 H -0.299 1.299 26 H -0.255 1.255 27 C -0.132 4.132 28 C 0.122 3.878 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.181 0.819 35 H 0.201 0.799 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.053 0.947 44 H 0.060 0.940 45 H 0.050 0.950 46 H 0.363 0.637 47 H 0.256 0.744 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.771 -8.015 -11.701 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C -0.067 4.067 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.181 4.181 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.122 0.878 10 C -0.215 4.215 11 C -0.184 4.184 12 C 0.312 3.688 13 O -0.450 6.450 14 N -0.337 5.337 15 C -0.008 4.008 16 C -0.185 4.185 17 C 0.067 3.933 18 N -0.396 5.396 19 C -0.354 4.354 20 H 0.080 0.920 21 C -0.256 4.256 22 N -0.635 5.635 23 Si 0.779 3.221 24 H -0.206 1.206 25 H -0.227 1.227 26 H -0.180 1.180 27 C -0.171 4.171 28 C -0.001 4.001 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.198 0.802 35 H 0.218 0.782 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.123 0.877 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.079 0.921 45 H 0.068 0.932 46 H 0.195 0.805 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.109 0.891 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.919 -8.608 -12.105 27.311 hybrid contribution -1.232 -0.093 0.852 1.501 sum 21.687 -8.701 -11.254 25.936 Atomic orbital electron populations 1.21698 0.93605 1.03120 1.01607 1.20065 0.96623 0.86609 1.04636 1.23638 1.04112 0.97439 0.81491 1.70207 1.19551 1.05538 1.29583 1.22652 1.07336 0.96232 0.94015 1.23063 1.08058 0.90333 0.96606 1.45659 1.48403 1.11823 1.07015 1.21137 0.97492 0.99549 0.77083 0.87812 1.22191 0.94070 1.03294 1.01991 1.21991 1.01716 1.02241 0.92437 1.20505 0.78246 0.82946 0.87116 1.90668 1.50487 1.26655 1.77151 1.48201 1.43369 1.27824 1.14277 1.21972 0.90682 0.86275 1.01881 1.22519 0.95587 1.01701 0.98669 1.20423 0.82302 0.96224 0.94356 1.42863 1.04881 1.05498 1.86361 1.19025 0.90064 0.88410 1.37920 0.92047 1.25452 0.97036 1.00373 1.02746 1.69876 1.06026 1.30139 1.57452 0.85467 0.77471 0.80812 0.78323 1.20641 1.22652 1.17958 1.22124 0.95209 0.97351 1.02405 1.21543 0.94544 1.01422 0.82568 0.93419 0.93041 0.90023 0.88522 0.89220 0.80170 0.78214 0.92203 0.90908 0.89621 0.85684 0.87690 0.89567 0.87599 0.92833 0.92089 0.93200 0.80456 0.93479 0.92343 0.90301 0.89097 0.89906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.89 71.98 0.71 -1.43 16 2 C -0.04 -0.63 6.08 29.85 0.18 -0.45 16 3 C 0.20 3.98 7.16 138.13 0.99 4.97 16 4 N -0.53 -12.89 11.25 -188.13 -2.12 -15.01 16 5 C -0.06 -1.08 11.87 83.52 0.99 -0.09 16 6 C -0.05 -0.73 10.70 83.09 0.89 0.16 16 7 N -0.45 -7.43 2.61 -491.90 -1.28 -8.71 16 8 C 0.15 2.19 2.64 44.99 0.12 2.31 16 9 H 0.10 1.68 6.48 -2.39 -0.02 1.66 16 10 C -0.16 -2.18 8.99 71.98 0.65 -1.53 16 11 C -0.14 -1.92 3.53 29.85 0.11 -1.82 16 12 C 0.52 9.99 7.41 87.66 0.65 10.64 16 13 O -0.57 -13.88 13.38 -3.04 -0.04 -13.92 16 14 N -0.60 -11.85 2.97 -817.98 -2.43 -14.27 16 15 C 0.11 2.10 6.37 86.51 0.55 2.66 16 16 C -0.14 -4.00 5.67 30.82 0.17 -3.83 16 17 C 0.17 5.71 2.73 45.02 0.12 5.84 16 18 N -0.75 -32.65 4.93 -322.78 -1.59 -34.24 16 19 C -0.22 -12.03 10.41 84.03 0.87 -11.16 16 20 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 21 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 22 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 23 Si 0.95 44.53 27.74 68.60 1.90 46.43 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.25 -10.79 6.52 99.48 0.65 -10.14 16 27 C -0.13 -3.46 5.55 30.69 0.17 -3.29 16 28 C 0.12 2.60 6.43 86.38 0.56 3.15 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.15 7.07 -2.39 -0.02 1.13 16 34 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 35 H 0.20 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.80 7.95 -2.39 -0.02 0.78 16 38 H 0.09 1.46 5.95 -2.38 -0.01 1.44 16 39 H 0.13 1.12 7.88 -2.39 -0.02 1.11 16 40 H 0.10 1.43 7.70 -2.38 -0.02 1.41 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.11 1.40 5.93 -2.38 -0.01 1.39 16 43 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 1.71 8.08 -2.39 -0.02 1.69 16 46 H 0.36 15.42 5.66 -92.71 -0.52 14.90 16 47 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 48 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 50 H 0.09 2.00 7.00 -2.39 -0.02 1.98 16 51 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.54 400.26 3.28 -69.26 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: 0.33 Total: 28.98 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 8.20 Total: 2.90 kcal Atomic # 7 Polarization: -126.53 SS G_CDS: -7.11 Total: -133.64 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.04 Total: -13.92 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.90 Total: 46.43 kcal Total: -72.54 3.28 -69.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996611168.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.404 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds