Wall clock time and date at job start Tue Mar 31 2020 20:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47282 * 2 1 4 4 C 1.50700 * 109.47340 * 120.00504 * 2 1 3 5 5 N 1.30502 * 125.64425 * 300.27381 * 4 2 1 6 6 C 1.34127 * 109.25683 * 180.14781 * 5 4 2 7 7 C 1.34672 * 108.01948 * 359.61488 * 6 5 4 8 8 N 1.35041 * 125.65474 * 119.99506 * 4 2 1 9 9 C 1.46499 * 126.39624 * 0.02562 * 8 4 2 10 10 C 1.53003 * 109.47006 * 85.02513 * 9 8 4 11 11 C 1.50698 * 109.46814 * 180.02562 * 10 9 8 12 12 O 1.21284 * 120.00172 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00015 * 180.02562 * 11 10 9 14 14 C 1.46924 * 120.62681 * 359.71185 * 13 11 10 15 15 C 1.53625 * 108.54409 * 126.37287 * 14 13 11 16 16 C 1.53044 * 109.23933 * 54.85117 * 15 14 13 17 17 N 1.46497 * 109.46075 * 178.49314 * 16 15 14 18 18 C 1.36937 * 120.00264 * 275.07176 * 17 16 15 19 19 H 1.08007 * 120.00038 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00339 * 179.97438 * 18 17 16 21 21 N 1.31618 * 120.00046 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99908 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47051 * 90.00260 * 22 20 18 24 24 H 1.48503 * 109.47182 * 209.99779 * 22 20 18 25 25 H 1.48502 * 109.47244 * 330.00020 * 22 20 18 26 26 C 1.53040 * 109.54092 * 298.51543 * 16 15 14 27 27 C 1.46928 * 120.63196 * 179.97438 * 13 11 10 28 28 H 1.09001 * 109.47175 * 60.00275 * 1 2 3 29 29 H 1.09007 * 109.47377 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47366 * 300.00054 * 1 2 3 31 31 H 1.09008 * 109.47224 * 240.00202 * 2 1 3 32 32 H 1.09005 * 109.47396 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47247 * 299.99683 * 3 2 1 34 34 H 1.09000 * 109.46964 * 59.99700 * 3 2 1 35 35 H 1.08002 * 125.99481 * 179.88589 * 6 5 4 36 36 H 1.07996 * 126.59510 * 180.20974 * 7 6 5 37 37 H 1.09007 * 109.46761 * 205.02107 * 9 8 4 38 38 H 1.08998 * 109.47012 * 325.02318 * 9 8 4 39 39 H 1.09003 * 109.46581 * 299.99247 * 10 9 8 40 40 H 1.08994 * 109.47411 * 59.99545 * 10 9 8 41 41 H 1.09000 * 109.58436 * 246.20084 * 14 13 11 42 42 H 1.08998 * 109.58768 * 6.62720 * 14 13 11 43 43 H 1.09000 * 109.63122 * 294.86525 * 15 14 13 44 44 H 1.08996 * 109.46279 * 174.73585 * 15 14 13 45 45 H 1.09000 * 109.44849 * 58.52790 * 16 15 14 46 46 H 0.96998 * 120.00196 * 95.06366 * 17 16 15 47 47 H 0.97005 * 120.00134 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.49590 * 301.41202 * 26 16 15 49 49 H 1.09005 * 109.52221 * 181.33227 * 26 16 15 50 50 H 1.09004 * 109.58415 * 353.37051 * 27 13 11 51 51 H 1.08995 * 109.58865 * 113.65036 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7818 -0.3650 2.4637 6 6 2.3933 -1.2210 3.2957 7 6 3.0406 -2.1365 2.5498 8 7 2.8119 -1.8131 1.2395 9 6 3.3187 -2.5291 0.0661 10 6 4.6108 -1.8668 -0.4166 11 6 5.1317 -2.6030 -1.6240 12 8 4.5292 -3.5630 -2.0556 13 7 6.2678 -2.1951 -2.2236 14 6 7.0059 -1.0307 -1.7156 15 6 8.4637 -1.4468 -1.4669 16 6 9.0428 -2.0468 -2.7502 17 7 10.4441 -2.4123 -2.5290 18 6 11.4287 -1.4724 -2.6783 19 1 11.1722 -0.4614 -2.9587 20 6 12.7564 -1.8187 -2.4682 21 7 13.7027 -0.9151 -2.6111 22 14 13.1999 -3.5666 -1.9811 23 1 13.4414 -4.3749 -3.2032 24 1 14.4285 -3.5514 -1.1470 25 1 12.0826 -4.1631 -1.2058 26 6 8.2454 -3.2944 -3.1373 27 6 6.7885 -2.9028 -3.4012 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.3672 -1.1853 4.3749 36 1 3.6276 -2.9662 2.9150 37 1 3.5199 -3.5668 0.3326 38 1 2.5742 -2.4959 -0.7293 39 1 4.4095 -0.8292 -0.6831 40 1 5.3552 -1.8999 0.3788 41 1 6.9728 -0.2275 -2.4517 42 1 6.5567 -0.6922 -0.7820 43 1 8.5018 -2.1885 -0.6691 44 1 9.0469 -0.5722 -1.1788 45 1 8.9815 -1.3129 -3.5538 46 1 10.6745 -3.3201 -2.2767 47 1 14.6305 -1.1569 -2.4639 48 1 8.2856 -4.0187 -2.3237 49 1 8.6728 -3.7349 -4.0381 50 1 6.1958 -3.8000 -3.5800 51 1 6.7357 -2.2504 -4.2727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997061141.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:42 Heat of formation + Delta-G solvation = 26.801968 kcal Electronic energy + Delta-G solvation = -29158.708818 eV Core-core repulsion = 25286.969061 eV Total energy + Delta-G solvation = -3871.739757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.41582 -40.33040 -37.73565 -35.66646 -35.12066 -34.76719 -32.30132 -31.43839 -30.39860 -29.77569 -28.98154 -27.46203 -25.73115 -24.43713 -23.17120 -23.02890 -22.21074 -21.43658 -20.47704 -19.34144 -19.11065 -17.94798 -17.51998 -16.75091 -16.21990 -16.08157 -15.36496 -15.21330 -14.92512 -14.58685 -14.26643 -14.18667 -13.98018 -13.87728 -13.61298 -13.57265 -13.42419 -13.17072 -12.92565 -12.70435 -12.49432 -12.40048 -12.17167 -12.00164 -11.87589 -11.75792 -11.52238 -11.25350 -11.18504 -11.09330 -11.01085 -10.68969 -10.34426 -10.17027 -10.08329 -9.98680 -9.78462 -9.67379 -9.02267 -8.73973 -8.58479 -7.38037 -5.85796 -3.22322 1.78507 2.36096 2.39063 2.93418 2.95792 3.30731 3.33783 3.39354 4.03317 4.22536 4.26222 4.32427 4.48180 4.51020 4.74920 4.79640 4.82581 4.89840 4.95091 4.97925 5.04111 5.10944 5.20363 5.24086 5.35772 5.36885 5.38303 5.42105 5.44251 5.52893 5.53588 5.54875 5.64197 5.72036 5.78894 5.91761 5.94658 5.97042 6.03418 6.12270 6.13274 6.25337 6.37982 6.55647 6.66694 6.81230 6.92582 7.24944 7.88903 7.90313 7.93435 8.33072 9.10809 9.83599 10.02839 11.32233 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017651 B = 0.002316 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.937775 B =12088.426506 C =12324.543236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.213 3.787 5 N -0.487 5.487 6 C -0.030 4.030 7 C -0.058 4.058 8 N -0.455 5.455 9 C 0.120 3.880 10 C -0.157 4.157 11 C 0.520 3.480 12 O -0.551 6.551 13 N -0.603 5.603 14 C 0.105 3.895 15 C -0.151 4.151 16 C 0.184 3.816 17 N -0.748 5.748 18 C -0.247 4.247 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.278 1.278 26 C -0.143 4.143 27 C 0.116 3.884 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.361 0.639 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.239 -0.404 5.305 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.049 4.049 5 N -0.205 5.205 6 C -0.178 4.178 7 C -0.190 4.190 8 N -0.137 5.137 9 C -0.003 4.003 10 C -0.198 4.198 11 C 0.308 3.692 12 O -0.429 6.429 13 N -0.335 5.335 14 C -0.018 4.018 15 C -0.192 4.192 16 C 0.074 3.926 17 N -0.390 5.390 18 C -0.377 4.377 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.182 4.182 27 C -0.006 4.006 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.190 0.810 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.194 0.806 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.108 0.892 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.799 -0.116 5.152 26.309 hybrid contribution 1.351 -1.968 0.393 2.419 sum -24.448 -2.084 5.546 25.156 Atomic orbital electron populations 1.21775 0.93047 1.02139 1.02781 1.19585 0.96763 0.95881 0.90884 1.21784 1.01068 0.94091 1.02842 1.23238 0.97060 0.88971 0.95670 1.70181 1.23831 1.27511 0.99002 1.22283 1.01228 0.94649 0.99596 1.22748 1.08498 1.04921 0.82853 1.45481 1.38498 1.22992 1.06760 1.21585 0.95672 0.96488 0.86556 1.22026 0.98372 1.01550 0.97827 1.20204 0.80623 0.84181 0.84237 1.90702 1.58082 1.28251 1.65913 1.48182 1.23796 1.31044 1.30499 1.22016 0.93430 0.87115 0.99275 1.22728 0.92922 1.02404 1.01195 1.20136 0.84137 0.93952 0.94402 1.42796 1.01458 1.10387 1.84344 1.19050 0.85801 0.92841 1.39963 0.89162 1.24680 0.95635 0.97163 1.01536 1.69697 0.99834 1.32759 1.55631 0.86560 0.77670 0.85909 0.78395 1.21036 1.21718 1.20413 1.22243 0.94037 0.99458 1.02439 1.21619 0.94721 0.97635 0.86664 0.91792 0.92817 0.91311 0.90129 0.92671 0.91747 0.91281 0.81424 0.80960 0.87979 0.88163 0.88128 0.87901 0.90890 0.90415 0.92287 0.90030 0.92433 0.80632 0.92977 0.91961 0.90325 0.89201 0.91184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.01 -0.09 3.25 -91.78 -0.30 -0.38 16 3 C -0.14 -1.03 9.18 37.16 0.34 -0.69 16 4 C 0.21 2.18 6.41 -155.42 -1.00 1.18 16 5 N -0.49 -5.81 11.25 -10.81 -0.12 -5.93 16 6 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 7 C -0.06 -0.53 11.58 -16.56 -0.19 -0.72 16 8 N -0.45 -4.25 2.75 -113.90 -0.31 -4.56 16 9 C 0.12 1.00 4.98 -4.04 -0.02 0.98 16 10 C -0.16 -1.32 4.37 -27.88 -0.12 -1.44 16 11 C 0.52 5.92 7.70 -10.98 -0.08 5.84 16 12 O -0.55 -7.80 15.40 5.55 0.09 -7.72 16 13 N -0.60 -6.99 2.97 -172.53 -0.51 -7.50 16 14 C 0.10 1.15 6.37 -3.49 -0.02 1.12 16 15 C -0.15 -2.24 5.68 -26.38 -0.15 -2.39 16 16 C 0.18 3.13 2.73 -67.89 -0.19 2.95 16 17 N -0.75 -16.55 4.92 -53.38 -0.26 -16.81 16 18 C -0.25 -6.60 10.41 -15.06 -0.16 -6.75 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.45 13.97 55.49 0.78 -27.67 16 22 Si 0.88 21.51 27.73 -169.99 -4.71 16.80 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 26 C -0.14 -2.03 5.55 -26.63 -0.15 -2.18 16 27 C 0.12 1.42 6.43 -3.73 -0.02 1.39 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.56 6.85 -51.92 -0.36 0.21 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.10 0.82 7.24 -51.93 -0.38 0.44 16 39 H 0.10 0.74 7.93 -51.93 -0.41 0.33 16 40 H 0.10 0.84 7.70 -51.93 -0.40 0.44 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.69 5.93 -51.93 -0.31 0.38 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 46 H 0.36 7.99 5.66 -40.82 -0.23 7.76 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 50 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 51 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -33.18 405.57 -9.77 -42.95 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.80 Total: 6.55 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.02 Total: -2.22 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.43 Total: -62.47 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.09 Total: -7.72 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.71 Total: 16.80 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.18 -9.77 -42.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997061141.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.751 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds