Wall clock time and date at job start Tue Mar 31 2020 18:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47286 * 2 1 4 4 N 1.30439 * 125.98684 * 90.02441 * 3 2 1 5 5 N 1.39933 * 108.89725 * 179.97438 * 4 3 2 6 6 C 1.46507 * 125.75418 * 180.02562 * 5 4 3 7 7 C 1.34253 * 108.49486 * 0.26384 * 5 4 3 8 8 C 1.38052 * 107.41439 * 359.58460 * 7 5 4 9 9 C 1.47429 * 126.41541 * 180.12355 * 8 7 5 10 10 O 1.21602 * 119.99885 * 180.34074 * 9 8 7 11 11 N 1.34773 * 120.00087 * 0.34345 * 9 8 7 12 12 C 1.46494 * 120.00160 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47189 * 34.99626 * 12 11 9 14 14 C 1.52996 * 109.47038 * 274.99940 * 12 11 9 15 15 C 1.53001 * 109.47468 * 154.99655 * 12 11 9 16 16 C 1.53040 * 109.45971 * 300.07128 * 15 12 11 17 17 C 1.53188 * 109.31104 * 178.61444 * 16 15 12 18 18 N 1.46925 * 108.78178 * 54.63016 * 17 16 15 19 19 C 1.36938 * 120.63099 * 126.40872 * 18 17 16 20 20 H 1.08003 * 120.00096 * 207.66938 * 19 18 17 21 21 C 1.38813 * 119.99731 * 27.67451 * 19 18 17 22 22 N 1.31613 * 120.00376 * 17.35932 * 21 19 18 23 23 Si 1.86809 * 119.99669 * 197.36366 * 21 19 18 24 24 H 1.48504 * 109.47062 * 59.99870 * 23 21 19 25 25 H 1.48502 * 109.46846 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46747 * 299.99867 * 23 21 19 27 27 C 1.46927 * 118.73792 * 306.39474 * 18 17 16 28 28 C 1.53035 * 109.46251 * 179.97438 * 15 12 11 29 29 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46813 * 300.00013 * 1 2 3 31 31 H 1.08996 * 109.47383 * 59.99841 * 1 2 3 32 32 H 1.09006 * 109.46734 * 240.00448 * 2 1 3 33 33 H 1.08995 * 109.47193 * 120.00677 * 2 1 3 34 34 H 1.08996 * 109.46970 * 90.02095 * 6 5 4 35 35 H 1.08995 * 109.46841 * 210.02345 * 6 5 4 36 36 H 1.08995 * 109.47175 * 330.02613 * 6 5 4 37 37 H 1.07992 * 126.29767 * 179.73631 * 7 5 4 38 38 H 0.97007 * 120.00041 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46874 * 299.99879 * 14 12 11 40 40 H 1.09002 * 109.47323 * 59.99870 * 14 12 11 41 41 H 1.09007 * 109.47032 * 179.97438 * 14 12 11 42 42 H 1.09005 * 109.45803 * 60.02884 * 15 12 11 43 43 H 1.09001 * 109.49640 * 298.56014 * 16 15 12 44 44 H 1.08997 * 109.49765 * 58.65676 * 16 15 12 45 45 H 1.09002 * 109.58621 * 294.84285 * 17 16 15 46 46 H 1.09007 * 109.58890 * 174.41882 * 17 16 15 47 47 H 0.96998 * 120.00078 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.58622 * 293.81562 * 27 18 17 49 49 H 1.08998 * 109.58512 * 173.38562 * 27 18 17 50 50 H 1.09005 * 109.50041 * 301.33597 * 28 15 12 51 51 H 1.09005 * 109.49583 * 61.43617 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1433 1.0555 5 7 2.7346 3.4042 0.6442 6 6 3.1249 4.5047 1.5291 7 6 2.7399 3.4373 -0.6979 8 6 2.3092 2.2035 -1.1433 9 6 2.1596 1.7838 -2.5486 10 8 1.7626 0.6644 -2.8098 11 7 2.4628 2.6405 -3.5437 12 6 2.3136 2.2236 -4.9401 13 1 1.4529 1.5610 -5.0315 14 6 3.5758 1.4849 -5.3895 15 6 2.1036 3.4569 -5.8210 16 6 0.8419 4.1965 -5.3702 17 6 0.6540 5.4492 -6.2317 18 7 0.6485 5.0537 -7.6468 19 6 -0.3843 5.4177 -8.4690 20 1 -0.6360 4.8062 -9.3229 21 6 -1.1075 6.5727 -8.2049 22 7 -0.6143 7.4881 -7.3982 23 14 -2.7812 6.8277 -8.9948 24 1 -3.6944 5.7308 -8.5846 25 1 -3.3431 8.1298 -8.5543 26 1 -2.6365 6.8248 -10.4727 27 6 1.7724 4.2604 -8.1629 28 6 1.9484 3.0211 -7.2798 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.1904 4.4347 1.7476 35 1 2.9160 5.4559 1.0397 36 1 2.5586 4.4420 2.4583 37 1 3.0301 4.2741 -1.3156 38 1 2.7792 3.5336 -3.3354 39 1 4.4365 2.1475 -5.2981 40 1 3.7254 0.6063 -4.7619 41 1 3.4646 1.1743 -6.4284 42 1 2.9646 4.1191 -5.7299 43 1 -0.0232 3.5433 -5.4845 44 1 0.9441 4.4861 -4.3244 45 1 1.4738 6.1442 -6.0498 46 1 -0.2940 5.9257 -5.9819 47 1 -1.1196 8.2954 -7.2140 48 1 2.6834 4.8584 -8.1384 49 1 1.5623 3.9524 -9.1871 50 1 2.8379 2.4743 -7.5928 51 1 1.0730 2.3787 -7.3764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997158470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:29 Heat of formation + Delta-G solvation = 43.209573 kcal Electronic energy + Delta-G solvation = -29619.810559 eV Core-core repulsion = 25748.782289 eV Total energy + Delta-G solvation = -3871.028270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.93 seconds Orbital eigenvalues (eV) -41.61401 -39.47081 -37.77385 -35.37736 -34.69824 -32.97756 -31.99655 -31.26705 -30.21111 -30.08275 -28.66525 -27.10798 -25.40311 -24.13173 -23.15408 -22.32879 -21.94052 -20.80360 -20.17179 -19.63314 -19.06038 -17.73776 -16.73681 -16.13630 -15.94382 -15.71759 -14.91988 -14.82248 -14.52593 -14.31430 -14.09361 -13.93352 -13.49908 -13.39547 -13.32522 -13.18066 -13.10521 -12.99621 -12.77194 -12.35663 -12.17215 -12.15006 -11.62711 -11.56376 -11.45762 -11.23338 -11.17109 -10.93609 -10.85160 -10.66321 -10.40922 -10.22379 -10.14143 -9.88475 -9.72849 -9.57478 -9.46366 -9.41530 -8.96085 -8.68832 -8.44936 -6.65384 -5.77919 -3.19205 1.33280 2.05753 2.10794 3.37229 3.39332 3.44758 3.46896 3.52405 4.10140 4.36815 4.51160 4.63415 4.74687 4.93396 5.00426 5.01788 5.16659 5.25624 5.29294 5.35707 5.36101 5.41982 5.47889 5.55776 5.56608 5.66895 5.79677 5.87167 5.89743 6.03925 6.08100 6.12645 6.19493 6.21808 6.32425 6.36106 6.39651 6.52081 6.55553 6.61497 6.71955 6.72458 6.80966 6.88307 7.01448 7.38159 7.40075 7.66025 7.71761 7.80613 8.43375 8.46639 9.23152 9.87055 10.43469 11.30514 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.002768 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.560210 B =10114.317688 C =10710.483260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.136 3.864 4 N -0.303 5.303 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.099 3.901 8 C -0.284 4.284 9 C 0.594 3.406 10 O -0.543 6.543 11 N -0.719 5.719 12 C 0.147 3.853 13 H 0.086 0.914 14 C -0.161 4.161 15 C -0.084 4.084 16 C -0.133 4.133 17 C 0.172 3.828 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.901 3.099 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.146 3.854 28 C -0.126 4.126 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.183 0.817 38 H 0.394 0.606 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.045 0.955 45 H 0.015 0.985 46 H 0.086 0.914 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.053 0.947 50 H 0.055 0.945 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -8.291 16.261 20.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.032 4.032 4 N -0.124 5.124 5 N -0.141 5.141 6 C -0.044 4.044 7 C -0.052 4.052 8 C -0.299 4.299 9 C 0.381 3.619 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.043 3.957 13 H 0.104 0.896 14 C -0.220 4.220 15 C -0.103 4.103 16 C -0.172 4.172 17 C 0.046 3.954 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.549 5.549 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.020 3.980 28 C -0.166 4.166 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.200 0.800 38 H 0.228 0.772 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.033 0.967 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.034 0.966 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.801 -8.742 17.484 21.867 hybrid contribution -0.584 1.026 -1.058 1.585 sum 9.217 -7.716 16.426 20.355 Atomic orbital electron populations 1.21614 0.93955 1.02023 1.02070 1.20109 0.96549 0.88021 1.03921 1.22462 0.95092 0.96908 0.88745 1.77173 1.22072 0.90499 1.22705 1.48291 1.49409 1.11610 1.04764 1.21992 1.01689 0.85956 0.94773 1.23123 0.97951 0.98876 0.85284 1.20330 1.19470 0.95376 0.94757 1.17198 0.76680 0.84640 0.83366 1.90723 1.47066 1.20162 1.84203 1.45933 1.68128 1.16574 1.06238 1.21109 0.98452 0.96842 0.79286 0.89584 1.22207 0.97648 1.00347 1.01765 1.21323 0.99117 0.94810 0.95040 1.22211 0.96299 1.00143 0.98548 1.20761 1.01438 0.90851 0.82360 1.44048 1.20406 1.61498 1.05557 1.19159 1.06898 1.03381 1.08614 0.91778 1.25009 0.99837 0.94935 0.99896 1.70020 1.36832 1.07978 1.40066 0.86389 0.84548 0.76938 0.79027 1.21038 1.21676 1.20906 1.20890 0.90857 0.90755 0.95539 1.22080 1.00562 0.99545 0.94363 0.91945 0.93091 0.92012 0.88069 0.90875 0.90278 0.88922 0.88928 0.80001 0.77199 0.92852 0.92643 0.91268 0.91654 0.92680 0.93610 0.96717 0.89618 0.93693 0.96635 0.92849 0.92661 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.90 37.16 0.37 -1.17 16 2 C -0.05 -0.55 5.97 -27.88 -0.17 -0.71 16 3 C 0.14 1.76 6.52 -82.02 -0.53 1.22 16 4 N -0.30 -3.81 12.50 33.89 0.42 -3.39 16 5 N -0.36 -3.54 3.98 -67.60 -0.27 -3.81 16 6 C 0.10 0.49 11.44 59.85 0.68 1.18 16 7 C 0.10 0.95 10.99 -16.56 -0.18 0.77 16 8 C -0.28 -3.58 6.13 -105.06 -0.64 -4.22 16 9 C 0.59 8.39 7.78 -12.52 -0.10 8.30 16 10 O -0.54 -9.19 14.58 5.28 0.08 -9.11 16 11 N -0.72 -9.00 4.35 -54.89 -0.24 -9.24 16 12 C 0.15 2.04 2.16 -67.93 -0.15 1.89 16 13 H 0.09 1.39 7.58 -51.93 -0.39 1.00 16 14 C -0.16 -1.99 9.13 37.16 0.34 -1.65 16 15 C -0.08 -1.29 1.78 -90.58 -0.16 -1.45 16 16 C -0.13 -2.42 5.22 -26.61 -0.14 -2.56 16 17 C 0.17 3.96 5.31 -3.71 -0.02 3.94 16 18 N -0.59 -14.58 3.00 -172.32 -0.52 -15.10 16 19 C -0.25 -6.86 9.59 -15.06 -0.14 -7.00 16 20 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 21 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 23 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 28 C -0.13 -2.08 5.05 -26.61 -0.13 -2.21 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.10 1.29 6.56 -51.93 -0.34 0.95 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.18 1.08 7.46 -52.49 -0.39 0.68 16 38 H 0.39 4.05 7.30 -40.82 -0.30 3.76 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.81 6.40 -51.92 -0.33 0.48 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16 45 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 47 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 50 H 0.05 0.77 6.36 -51.93 -0.33 0.44 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -33.58 402.09 -8.62 -42.21 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.66 Total: 1.84 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.09 Total: -0.77 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.02 Total: -56.88 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.58 -8.62 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997158470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.417 kcal (2) G-P(sol) polarization free energy of solvation -33.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.93 seconds