Wall clock time and date at job start Tue Mar 31 2020 18:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47286 * 2 1 4 4 N 1.30439 * 125.98684 * 90.02441 * 3 2 1 5 5 N 1.39933 * 108.89725 * 179.97438 * 4 3 2 6 6 C 1.46507 * 125.75418 * 180.02562 * 5 4 3 7 7 C 1.34253 * 108.49486 * 0.26384 * 5 4 3 8 8 C 1.38052 * 107.41439 * 359.58460 * 7 5 4 9 9 C 1.47429 * 126.41541 * 180.12355 * 8 7 5 10 10 O 1.21602 * 119.99885 * 180.34074 * 9 8 7 11 11 N 1.34773 * 120.00087 * 0.34345 * 9 8 7 12 12 C 1.46494 * 120.00160 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47189 * 34.99626 * 12 11 9 14 14 C 1.52996 * 109.47038 * 274.99940 * 12 11 9 15 15 C 1.53001 * 109.47468 * 154.99655 * 12 11 9 16 16 C 1.53040 * 109.45971 * 300.07128 * 15 12 11 17 17 C 1.53188 * 109.31104 * 178.61444 * 16 15 12 18 18 N 1.46925 * 108.78178 * 54.63016 * 17 16 15 19 19 C 1.36938 * 120.63099 * 126.40872 * 18 17 16 20 20 H 1.08003 * 120.00096 * 207.66938 * 19 18 17 21 21 C 1.38813 * 119.99731 * 27.67451 * 19 18 17 22 22 N 1.31613 * 120.00376 * 17.35932 * 21 19 18 23 23 Si 1.86809 * 119.99669 * 197.36366 * 21 19 18 24 24 H 1.48504 * 109.47062 * 59.99870 * 23 21 19 25 25 H 1.48502 * 109.46846 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46747 * 299.99867 * 23 21 19 27 27 C 1.46927 * 118.73792 * 306.39474 * 18 17 16 28 28 C 1.53035 * 109.46251 * 179.97438 * 15 12 11 29 29 H 1.08999 * 109.46932 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46813 * 300.00013 * 1 2 3 31 31 H 1.08996 * 109.47383 * 59.99841 * 1 2 3 32 32 H 1.09006 * 109.46734 * 240.00448 * 2 1 3 33 33 H 1.08995 * 109.47193 * 120.00677 * 2 1 3 34 34 H 1.08996 * 109.46970 * 90.02095 * 6 5 4 35 35 H 1.08995 * 109.46841 * 210.02345 * 6 5 4 36 36 H 1.08995 * 109.47175 * 330.02613 * 6 5 4 37 37 H 1.07992 * 126.29767 * 179.73631 * 7 5 4 38 38 H 0.97007 * 120.00041 * 359.97438 * 11 9 8 39 39 H 1.09002 * 109.46874 * 299.99879 * 14 12 11 40 40 H 1.09002 * 109.47323 * 59.99870 * 14 12 11 41 41 H 1.09007 * 109.47032 * 179.97438 * 14 12 11 42 42 H 1.09005 * 109.45803 * 60.02884 * 15 12 11 43 43 H 1.09001 * 109.49640 * 298.56014 * 16 15 12 44 44 H 1.08997 * 109.49765 * 58.65676 * 16 15 12 45 45 H 1.09002 * 109.58621 * 294.84285 * 17 16 15 46 46 H 1.09007 * 109.58890 * 174.41882 * 17 16 15 47 47 H 0.96998 * 120.00078 * 179.97438 * 22 21 19 48 48 H 1.08994 * 109.58622 * 293.81562 * 27 18 17 49 49 H 1.08998 * 109.58512 * 173.38562 * 27 18 17 50 50 H 1.09005 * 109.50041 * 301.33597 * 28 15 12 51 51 H 1.09005 * 109.49583 * 61.43617 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2883 2.1433 1.0555 5 7 2.7346 3.4042 0.6442 6 6 3.1249 4.5047 1.5291 7 6 2.7399 3.4373 -0.6979 8 6 2.3092 2.2035 -1.1433 9 6 2.1596 1.7838 -2.5486 10 8 1.7626 0.6644 -2.8098 11 7 2.4628 2.6405 -3.5437 12 6 2.3136 2.2236 -4.9401 13 1 1.4529 1.5610 -5.0315 14 6 3.5758 1.4849 -5.3895 15 6 2.1036 3.4569 -5.8210 16 6 0.8419 4.1965 -5.3702 17 6 0.6540 5.4492 -6.2317 18 7 0.6485 5.0537 -7.6468 19 6 -0.3843 5.4177 -8.4690 20 1 -0.6360 4.8062 -9.3229 21 6 -1.1075 6.5727 -8.2049 22 7 -0.6143 7.4881 -7.3982 23 14 -2.7812 6.8277 -8.9948 24 1 -3.6944 5.7308 -8.5846 25 1 -3.3431 8.1298 -8.5543 26 1 -2.6365 6.8248 -10.4727 27 6 1.7724 4.2604 -8.1629 28 6 1.9484 3.0211 -7.2798 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.1904 4.4347 1.7476 35 1 2.9160 5.4559 1.0397 36 1 2.5586 4.4420 2.4583 37 1 3.0301 4.2741 -1.3156 38 1 2.7792 3.5336 -3.3354 39 1 4.4365 2.1475 -5.2981 40 1 3.7254 0.6063 -4.7619 41 1 3.4646 1.1743 -6.4284 42 1 2.9646 4.1191 -5.7299 43 1 -0.0232 3.5433 -5.4845 44 1 0.9441 4.4861 -4.3244 45 1 1.4738 6.1442 -6.0498 46 1 -0.2940 5.9257 -5.9819 47 1 -1.1196 8.2954 -7.2140 48 1 2.6834 4.8584 -8.1384 49 1 1.5623 3.9524 -9.1871 50 1 2.8379 2.4743 -7.5928 51 1 1.0730 2.3787 -7.3764 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997158470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:25 Heat of formation + Delta-G solvation = 22.381907 kcal Electronic energy + Delta-G solvation = -29620.713714 eV Core-core repulsion = 25748.782289 eV Total energy + Delta-G solvation = -3871.931425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.44194 -40.61716 -39.19170 -36.75466 -35.60187 -34.50221 -33.06050 -32.43930 -31.79882 -31.25526 -29.96846 -27.77648 -27.12335 -25.25013 -24.38010 -23.57194 -23.29078 -22.03924 -21.25299 -20.76284 -20.35623 -18.82734 -18.44866 -17.13081 -16.86989 -16.67793 -16.64228 -15.78637 -15.71903 -15.52661 -15.27653 -15.15970 -14.92777 -14.83934 -14.67515 -14.27874 -14.05908 -13.93767 -13.72750 -13.55783 -13.41898 -13.15954 -13.02350 -12.88929 -12.70006 -12.61322 -12.44940 -12.34901 -12.17680 -12.09090 -11.93946 -11.77213 -11.74741 -11.42049 -11.15973 -11.05921 -10.69747 -10.50131 -10.38448 -10.02413 -9.57512 -8.63614 -7.85559 -5.28984 0.54846 1.11755 1.46235 1.46922 1.48968 1.55104 2.34725 2.52071 2.52445 3.28383 3.36764 3.69919 3.74408 3.80228 4.01554 4.04878 4.10185 4.22861 4.27802 4.42039 4.43128 4.47624 4.49006 4.54822 4.61156 4.65281 4.66570 4.70813 4.72408 4.79174 4.89161 4.97752 5.02841 5.05166 5.12158 5.16642 5.18352 5.28822 5.29285 5.34081 5.43816 5.48864 5.50926 5.57041 5.65065 5.71463 5.83417 5.91153 6.42038 6.53364 6.75484 7.18484 7.41492 7.91550 8.41268 9.20003 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013339 B = 0.002768 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2098.560210 B =10114.317688 C =10710.483260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.046 4.046 3 C 0.119 3.881 4 N -0.328 5.328 5 N -0.359 5.359 6 C 0.086 3.914 7 C 0.119 3.881 8 C -0.317 4.317 9 C 0.593 3.407 10 O -0.579 6.579 11 N -0.710 5.710 12 C 0.158 3.842 13 H 0.060 0.940 14 C -0.154 4.154 15 C -0.072 4.072 16 C -0.118 4.118 17 C 0.179 3.821 18 N -0.613 5.613 19 C -0.263 4.263 20 H 0.062 0.938 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.961 3.039 24 H -0.283 1.283 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.141 3.859 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.121 0.879 36 H 0.094 0.906 37 H 0.223 0.777 38 H 0.408 0.592 39 H 0.070 0.930 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.003 0.997 46 H 0.047 0.953 47 H 0.249 0.751 48 H 0.020 0.980 49 H 0.050 0.950 50 H 0.090 0.910 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.631 -8.010 16.967 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.085 4.085 3 C -0.048 4.048 4 N -0.150 5.150 5 N -0.136 5.136 6 C -0.053 4.053 7 C -0.034 4.034 8 C -0.332 4.332 9 C 0.382 3.618 10 O -0.460 6.460 11 N -0.361 5.361 12 C 0.053 3.947 13 H 0.079 0.921 14 C -0.212 4.212 15 C -0.091 4.091 16 C -0.157 4.157 17 C 0.053 3.947 18 N -0.336 5.336 19 C -0.394 4.394 20 H 0.080 0.920 21 C -0.245 4.245 22 N -0.578 5.578 23 Si 0.790 3.210 24 H -0.209 1.209 25 H -0.219 1.219 26 H -0.201 1.201 27 C 0.016 3.984 28 C -0.155 4.155 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.112 0.888 37 H 0.239 0.761 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.052 0.948 44 H 0.086 0.914 45 H 0.021 0.979 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.038 0.962 49 H 0.068 0.932 50 H 0.109 0.891 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.362 -8.457 18.208 23.069 hybrid contribution -1.009 0.997 -1.244 1.887 sum 10.354 -7.460 16.964 21.228 Atomic orbital electron populations 1.21546 0.93776 1.02680 1.00924 1.20074 0.96670 0.88049 1.03712 1.22638 0.95500 0.97416 0.89239 1.77104 1.22987 0.91927 1.22979 1.48694 1.47955 1.11454 1.05508 1.22412 1.02769 0.85551 0.94576 1.23648 0.95577 0.98674 0.85531 1.20307 1.22132 0.96997 0.93772 1.17433 0.75967 0.84223 0.84172 1.90702 1.48779 1.21759 1.84797 1.45783 1.67803 1.17080 1.05417 1.20849 0.98561 0.95531 0.79743 0.92127 1.22138 0.97116 1.00061 1.01916 1.21193 0.97942 0.95344 0.94602 1.21992 0.97127 0.97691 0.98890 1.20577 0.98892 0.92520 0.82718 1.44334 1.21268 1.61999 1.06034 1.19466 1.07913 1.03211 1.08762 0.92015 1.25701 1.02865 0.94927 1.00961 1.70154 1.37838 1.08261 1.41533 0.85436 0.80669 0.76475 0.78456 1.20895 1.21861 1.20129 1.21065 0.89479 0.91649 0.96236 1.21961 1.01656 0.97615 0.94283 0.90432 0.92817 0.94340 0.89586 0.89614 0.88545 0.86104 0.88767 0.76072 0.75603 0.91085 0.93546 0.90482 0.90029 0.94795 0.91366 0.97873 0.93477 0.94178 0.96196 0.93186 0.89148 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.90 71.98 0.71 -2.26 16 2 C -0.05 -1.09 5.97 29.85 0.18 -0.91 16 3 C 0.12 3.05 6.52 43.52 0.28 3.33 16 4 N -0.33 -7.90 12.50 -46.68 -0.58 -8.49 16 5 N -0.36 -6.12 3.98 -367.79 -1.46 -7.58 16 6 C 0.09 0.60 11.44 127.77 1.46 2.06 16 7 C 0.12 1.95 10.99 84.28 0.93 2.88 16 8 C -0.32 -7.64 6.13 -20.15 -0.12 -7.76 16 9 C 0.59 16.36 7.78 86.66 0.67 17.03 16 10 O -0.58 -19.91 14.58 -4.04 -0.06 -19.97 16 11 N -0.71 -16.38 4.35 -445.82 -1.94 -18.32 16 12 C 0.16 4.08 2.16 44.99 0.10 4.18 16 13 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 14 C -0.15 -3.39 9.13 71.98 0.66 -2.73 16 15 C -0.07 -2.06 1.78 -10.77 -0.02 -2.08 16 16 C -0.12 -4.21 5.22 30.67 0.16 -4.05 16 17 C 0.18 8.31 5.31 86.36 0.46 8.77 16 18 N -0.61 -30.32 3.00 -699.09 -2.09 -32.42 16 19 C -0.26 -14.55 9.59 84.03 0.81 -13.75 16 20 H 0.06 3.36 7.89 -2.91 -0.02 3.34 16 21 C -0.05 -2.75 4.91 84.86 0.42 -2.33 16 22 N -0.93 -54.53 11.19 21.65 0.24 -54.29 16 23 Si 0.96 45.15 29.59 68.60 2.03 47.18 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 C 0.14 5.59 6.52 86.36 0.56 6.15 16 28 C -0.12 -3.59 5.05 30.67 0.15 -3.44 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 2.29 6.56 -2.38 -0.02 2.27 16 33 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.22 1.62 7.46 -2.91 -0.02 1.59 16 38 H 0.41 7.07 7.30 -92.70 -0.68 6.39 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.57 6.40 -2.38 -0.02 1.55 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 2.10 7.40 -2.39 -0.02 2.08 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.05 2.55 6.04 -2.38 -0.01 2.53 16 47 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 48 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.05 1.98 7.93 -2.39 -0.02 1.96 16 50 H 0.09 2.21 6.36 -2.38 -0.02 2.20 16 51 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -75.65 402.09 3.78 -71.87 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.24 Total: 16.92 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: 7.41 Total: 5.11 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -5.84 Total: -121.10 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -75.65 3.78 -71.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997158470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.249 kcal (2) G-P(sol) polarization free energy of solvation -75.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds