Wall clock time and date at job start Tue Mar 31 2020 18:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47206 * 2 1 4 4 C 1.35373 * 126.38575 * 85.32363 * 3 2 1 5 5 C 1.41496 * 105.50301 * 180.14682 * 4 3 2 6 6 C 1.47707 * 126.52198 * 179.84567 * 5 4 3 7 7 O 1.21578 * 119.99647 * 359.43344 * 6 5 4 8 8 N 1.34772 * 120.00476 * 179.70986 * 6 5 4 9 9 C 1.46503 * 120.00072 * 179.72407 * 8 6 5 10 10 H 1.08998 * 109.47026 * 35.00059 * 9 8 6 11 11 C 1.53003 * 109.46982 * 274.99701 * 9 8 6 12 12 C 1.53007 * 109.46902 * 154.99742 * 9 8 6 13 13 C 1.53034 * 109.46012 * 300.06491 * 12 9 8 14 14 C 1.53192 * 109.31217 * 178.61311 * 13 12 9 15 15 N 1.46931 * 108.77278 * 54.63936 * 14 13 12 16 16 C 1.36931 * 120.63141 * 126.41275 * 15 14 13 17 17 H 1.08002 * 120.00191 * 207.66256 * 16 15 14 18 18 C 1.38813 * 120.00287 * 27.66631 * 16 15 14 19 19 N 1.31619 * 120.00036 * 17.35995 * 18 16 15 20 20 Si 1.86801 * 120.00100 * 197.36985 * 18 16 15 21 21 H 1.48492 * 109.47202 * 59.99441 * 20 18 16 22 22 H 1.48502 * 109.46969 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46833 * 299.99254 * 20 18 16 24 24 C 1.46925 * 118.73565 * 306.38962 * 15 14 13 25 25 C 1.53046 * 109.45604 * 179.97438 * 12 9 8 26 26 N 1.31814 * 106.96380 * 359.57447 * 5 4 3 27 27 N 1.28464 * 110.07188 * 0.27164 * 26 5 4 28 28 C 1.46497 * 124.88401 * 180.02562 * 27 26 5 29 29 H 1.08996 * 109.46995 * 300.00026 * 1 2 3 30 30 H 1.08998 * 109.46972 * 59.99864 * 1 2 3 31 31 H 1.08997 * 109.46713 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47404 * 239.99740 * 2 1 3 33 33 H 1.09005 * 109.46889 * 119.99740 * 2 1 3 34 34 H 1.07999 * 127.24764 * 0.02562 * 4 3 2 35 35 H 0.97002 * 119.99707 * 359.71785 * 8 6 5 36 36 H 1.09001 * 109.46809 * 300.00144 * 11 9 8 37 37 H 1.08994 * 109.47079 * 59.99849 * 11 9 8 38 38 H 1.09001 * 109.46893 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.45898 * 60.02829 * 12 9 8 40 40 H 1.08998 * 109.50259 * 298.56860 * 13 12 9 41 41 H 1.09004 * 109.49898 * 58.66900 * 13 12 9 42 42 H 1.08999 * 109.59001 * 294.85123 * 14 13 12 43 43 H 1.09001 * 109.58979 * 174.41994 * 14 13 12 44 44 H 0.96998 * 120.00391 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.58954 * 293.82118 * 24 15 14 46 46 H 1.09005 * 109.58430 * 173.39372 * 24 15 14 47 47 H 1.08995 * 109.49772 * 301.34108 * 25 12 9 48 48 H 1.09004 * 109.49709 * 61.43683 * 25 12 9 49 49 H 1.08999 * 109.47356 * 89.96969 * 28 27 26 50 50 H 1.09005 * 109.47290 * 209.97127 * 28 27 26 51 51 H 1.09006 * 109.47317 * 329.96710 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2163 2.2075 1.0862 5 6 2.6925 3.4414 0.5832 6 6 3.0418 4.6378 1.3759 7 8 2.9194 4.6226 2.5854 8 7 3.4911 5.7481 0.7580 9 6 3.8319 6.9367 1.5438 10 1 4.2593 6.6307 2.4986 11 6 2.5686 7.7634 1.7919 12 6 4.8511 7.7807 0.7758 13 6 6.1139 6.9530 0.5263 14 6 7.1183 7.7894 -0.2727 15 7 7.3555 9.0519 0.4405 16 6 8.6283 9.4475 0.7544 17 1 8.8011 10.0800 1.6126 18 6 9.6966 9.0356 -0.0304 19 7 9.4814 8.5667 -1.2413 20 14 11.4397 9.1464 0.6321 21 1 11.5562 8.3190 1.8596 22 1 12.3914 8.6475 -0.3929 23 1 11.7570 10.5604 0.9562 24 6 6.2010 9.8822 0.8100 25 6 5.2064 9.0226 1.5966 26 7 2.7706 3.3182 -0.7268 27 7 2.3887 2.1445 -1.0829 28 6 2.3465 1.6605 -2.4650 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0356 1.9487 2.1190 35 1 3.5889 5.7601 -0.2070 36 1 2.1412 8.0693 0.8370 37 1 1.8425 7.1621 2.3389 38 1 2.8222 8.6479 2.3761 39 1 4.4234 8.0869 -0.1788 40 1 6.5562 6.6673 1.4806 41 1 5.8560 6.0571 -0.0385 42 1 6.7133 7.9995 -1.2626 43 1 8.0560 7.2419 -0.3679 44 1 10.2278 8.2785 -1.7896 45 1 5.7211 10.2629 -0.0916 46 1 6.5334 10.7154 1.4293 47 1 4.3027 9.5993 1.7935 48 1 5.6571 8.7177 2.5411 49 1 3.3013 1.1995 -2.7178 50 1 1.5491 0.9245 -2.5680 51 1 2.1576 2.4973 -3.1375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997447444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:16 Heat of formation + Delta-G solvation = 46.368974 kcal Electronic energy + Delta-G solvation = -29245.731978 eV Core-core repulsion = 25374.840710 eV Total energy + Delta-G solvation = -3870.891268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.61 seconds Orbital eigenvalues (eV) -42.87153 -39.59705 -37.78304 -35.22526 -34.76330 -33.61669 -32.78081 -30.97889 -30.14885 -29.58854 -28.81446 -27.56366 -25.36654 -24.16564 -23.75130 -22.45903 -21.88941 -21.03496 -20.35955 -19.76705 -18.89868 -17.40199 -16.79066 -16.55691 -16.41375 -15.77909 -14.99116 -14.84038 -14.61451 -14.46192 -14.04778 -13.78318 -13.71427 -13.44527 -13.30783 -13.27941 -13.16810 -12.93138 -12.87617 -12.64378 -12.31146 -12.14018 -11.99019 -11.59417 -11.58803 -11.42419 -11.13487 -10.93165 -10.90284 -10.63118 -10.37787 -10.19755 -10.08669 -9.99162 -9.81724 -9.43817 -9.38637 -9.28119 -9.11923 -8.78770 -8.40620 -6.60836 -5.73371 -3.14804 1.50793 1.94681 2.23278 3.31376 3.42070 3.47378 3.49487 3.51007 4.09933 4.20059 4.50240 4.54700 4.68246 4.72044 4.82349 4.96775 5.03880 5.07399 5.15522 5.31360 5.34053 5.41215 5.44523 5.46139 5.50333 5.59822 5.70753 5.71395 5.78772 5.83893 5.91510 6.08056 6.17475 6.19891 6.27399 6.37231 6.41398 6.54747 6.56650 6.67360 6.74018 6.77981 6.86543 6.93075 7.06300 7.44999 7.58116 7.72297 7.84629 7.85799 8.36350 8.51042 9.27357 9.91463 10.48250 11.35013 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002511 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.214593 B =11148.249841 C =12162.971634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C 0.009 3.991 4 C -0.177 4.177 5 C -0.012 4.012 6 C 0.604 3.396 7 O -0.538 6.538 8 N -0.705 5.705 9 C 0.144 3.856 10 H 0.087 0.913 11 C -0.162 4.162 12 C -0.084 4.084 13 C -0.134 4.134 14 C 0.172 3.828 15 N -0.592 5.592 16 C -0.250 4.250 17 H 0.064 0.936 18 C 0.000 4.000 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.146 3.854 25 C -0.126 4.126 26 N -0.259 5.259 27 N -0.281 5.281 28 C 0.084 3.916 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.160 0.840 35 H 0.405 0.595 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.086 0.914 44 H 0.253 0.747 45 H 0.016 0.984 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.769 -16.607 -1.536 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.205 4.205 5 C -0.172 4.172 6 C 0.388 3.612 7 O -0.414 6.414 8 N -0.355 5.355 9 C 0.040 3.960 10 H 0.105 0.895 11 C -0.220 4.220 12 C -0.103 4.103 13 C -0.173 4.173 14 C 0.046 3.954 15 N -0.315 5.315 16 C -0.379 4.379 17 H 0.082 0.918 18 C -0.198 4.198 19 N -0.549 5.549 20 Si 0.731 3.269 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.209 1.209 24 C 0.020 3.980 25 C -0.165 4.165 26 N -0.095 5.095 27 N -0.070 5.070 28 C -0.056 4.056 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.034 0.966 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.112 0.888 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -19.409 -16.086 -1.891 25.280 hybrid contribution 0.800 -0.454 0.312 0.972 sum -18.609 -16.541 -1.578 24.947 Atomic orbital electron populations 1.21772 0.94057 1.02160 1.02633 1.20103 0.96384 0.88804 1.03909 1.21372 1.06239 0.96953 0.86898 1.21487 1.07003 0.92408 0.99559 1.21958 1.08408 0.96961 0.89847 1.16872 0.76976 0.81101 0.86281 1.90776 1.54262 1.83117 1.13214 1.45963 1.65537 1.12641 1.11394 1.21191 0.94944 0.84080 0.95759 0.89516 1.22210 0.97758 1.00261 1.01773 1.21322 0.94881 0.95601 0.98463 1.22216 0.96021 0.97767 1.01287 1.20763 0.97104 0.86226 0.91307 1.44057 1.01359 1.18779 1.67338 1.19151 0.82905 1.29400 1.06484 0.91789 1.25022 0.98179 1.01799 0.94795 1.70028 1.30329 1.47226 1.07291 0.86383 0.84552 0.77913 0.78022 1.21075 1.21702 1.20911 1.20889 0.88608 0.92754 0.95783 1.22083 0.99066 0.96060 0.99320 1.73559 1.18130 1.02749 1.15044 1.45301 1.45580 1.08259 1.07814 1.22165 1.04209 1.01599 0.77635 0.91846 0.92812 0.91740 0.90730 0.89077 0.82220 0.75963 0.92692 0.92657 0.91092 0.91509 0.92716 0.93451 0.96624 0.89596 0.93695 0.96602 0.92840 0.92643 0.92143 0.89593 0.88822 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.90 37.16 0.37 -0.35 16 2 C -0.05 -0.30 6.00 -27.88 -0.17 -0.46 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -2.16 10.73 -39.36 -0.42 -2.58 16 5 C -0.01 -0.17 7.13 -82.77 -0.59 -0.76 16 6 C 0.60 9.74 7.79 -12.39 -0.10 9.64 16 7 O -0.54 -10.07 16.59 5.30 0.09 -9.98 16 8 N -0.71 -10.51 4.36 -54.79 -0.24 -10.75 16 9 C 0.14 2.21 2.16 -67.92 -0.15 2.06 16 10 H 0.09 1.49 7.58 -51.93 -0.39 1.10 16 11 C -0.16 -2.17 9.13 37.16 0.34 -1.83 16 12 C -0.08 -1.40 1.79 -90.57 -0.16 -1.56 16 13 C -0.13 -2.63 5.22 -26.61 -0.14 -2.77 16 14 C 0.17 4.17 5.31 -3.71 -0.02 4.15 16 15 N -0.59 -15.09 3.00 -172.31 -0.52 -15.60 16 16 C -0.25 -6.98 9.58 -15.06 -0.14 -7.13 16 17 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 18 C 0.00 0.01 4.91 -17.43 -0.09 -0.08 16 19 N -0.90 -26.66 11.19 55.49 0.62 -26.03 16 20 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.15 3.09 6.51 -3.71 -0.02 3.06 16 25 C -0.13 -2.18 5.05 -26.61 -0.13 -2.32 16 26 N -0.26 -3.39 11.67 33.42 0.39 -3.00 16 27 N -0.28 -2.81 3.70 -63.85 -0.24 -3.04 16 28 C 0.08 0.44 10.89 59.85 0.65 1.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.29 7.42 -51.93 -0.39 -0.10 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.41 5.68 8.11 -40.82 -0.33 5.34 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.89 6.40 -51.93 -0.33 0.55 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.87 7.40 -51.93 -0.38 0.48 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 2.35 6.04 -51.93 -0.31 2.04 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.11 7.93 -51.93 -0.41 0.70 16 47 H 0.06 0.82 6.36 -51.93 -0.33 0.49 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.24 7.44 -51.93 -0.39 -0.14 16 51 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -34.09 404.46 -8.84 -42.93 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.74 Total: 2.53 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.28 Total: -0.25 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.02 Total: -58.43 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.09 -8.84 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997447444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.302 kcal (2) G-P(sol) polarization free energy of solvation -34.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.61 seconds