Wall clock time and date at job start Tue Mar 31 2020 18:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47206 * 2 1 4 4 C 1.35373 * 126.38575 * 85.32363 * 3 2 1 5 5 C 1.41496 * 105.50301 * 180.14682 * 4 3 2 6 6 C 1.47707 * 126.52198 * 179.84567 * 5 4 3 7 7 O 1.21578 * 119.99647 * 359.43344 * 6 5 4 8 8 N 1.34772 * 120.00476 * 179.70986 * 6 5 4 9 9 C 1.46503 * 120.00072 * 179.72407 * 8 6 5 10 10 H 1.08998 * 109.47026 * 35.00059 * 9 8 6 11 11 C 1.53003 * 109.46982 * 274.99701 * 9 8 6 12 12 C 1.53007 * 109.46902 * 154.99742 * 9 8 6 13 13 C 1.53034 * 109.46012 * 300.06491 * 12 9 8 14 14 C 1.53192 * 109.31217 * 178.61311 * 13 12 9 15 15 N 1.46931 * 108.77278 * 54.63936 * 14 13 12 16 16 C 1.36931 * 120.63141 * 126.41275 * 15 14 13 17 17 H 1.08002 * 120.00191 * 207.66256 * 16 15 14 18 18 C 1.38813 * 120.00287 * 27.66631 * 16 15 14 19 19 N 1.31619 * 120.00036 * 17.35995 * 18 16 15 20 20 Si 1.86801 * 120.00100 * 197.36985 * 18 16 15 21 21 H 1.48492 * 109.47202 * 59.99441 * 20 18 16 22 22 H 1.48502 * 109.46969 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46833 * 299.99254 * 20 18 16 24 24 C 1.46925 * 118.73565 * 306.38962 * 15 14 13 25 25 C 1.53046 * 109.45604 * 179.97438 * 12 9 8 26 26 N 1.31814 * 106.96380 * 359.57447 * 5 4 3 27 27 N 1.28464 * 110.07188 * 0.27164 * 26 5 4 28 28 C 1.46497 * 124.88401 * 180.02562 * 27 26 5 29 29 H 1.08996 * 109.46995 * 300.00026 * 1 2 3 30 30 H 1.08998 * 109.46972 * 59.99864 * 1 2 3 31 31 H 1.08997 * 109.46713 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47404 * 239.99740 * 2 1 3 33 33 H 1.09005 * 109.46889 * 119.99740 * 2 1 3 34 34 H 1.07999 * 127.24764 * 0.02562 * 4 3 2 35 35 H 0.97002 * 119.99707 * 359.71785 * 8 6 5 36 36 H 1.09001 * 109.46809 * 300.00144 * 11 9 8 37 37 H 1.08994 * 109.47079 * 59.99849 * 11 9 8 38 38 H 1.09001 * 109.46893 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.45898 * 60.02829 * 12 9 8 40 40 H 1.08998 * 109.50259 * 298.56860 * 13 12 9 41 41 H 1.09004 * 109.49898 * 58.66900 * 13 12 9 42 42 H 1.08999 * 109.59001 * 294.85123 * 14 13 12 43 43 H 1.09001 * 109.58979 * 174.41994 * 14 13 12 44 44 H 0.96998 * 120.00391 * 180.02562 * 19 18 16 45 45 H 1.09005 * 109.58954 * 293.82118 * 24 15 14 46 46 H 1.09005 * 109.58430 * 173.39372 * 24 15 14 47 47 H 1.08995 * 109.49772 * 301.34108 * 25 12 9 48 48 H 1.09004 * 109.49709 * 61.43683 * 25 12 9 49 49 H 1.08999 * 109.47356 * 89.96969 * 28 27 26 50 50 H 1.09005 * 109.47290 * 209.97127 * 28 27 26 51 51 H 1.09006 * 109.47317 * 329.96710 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2163 2.2075 1.0862 5 6 2.6925 3.4414 0.5832 6 6 3.0418 4.6378 1.3759 7 8 2.9194 4.6226 2.5854 8 7 3.4911 5.7481 0.7580 9 6 3.8319 6.9367 1.5438 10 1 4.2593 6.6307 2.4986 11 6 2.5686 7.7634 1.7919 12 6 4.8511 7.7807 0.7758 13 6 6.1139 6.9530 0.5263 14 6 7.1183 7.7894 -0.2727 15 7 7.3555 9.0519 0.4405 16 6 8.6283 9.4475 0.7544 17 1 8.8011 10.0800 1.6126 18 6 9.6966 9.0356 -0.0304 19 7 9.4814 8.5667 -1.2413 20 14 11.4397 9.1464 0.6321 21 1 11.5562 8.3190 1.8596 22 1 12.3914 8.6475 -0.3929 23 1 11.7570 10.5604 0.9562 24 6 6.2010 9.8822 0.8100 25 6 5.2064 9.0226 1.5966 26 7 2.7706 3.3182 -0.7268 27 7 2.3887 2.1445 -1.0829 28 6 2.3465 1.6605 -2.4650 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.0356 1.9487 2.1190 35 1 3.5889 5.7601 -0.2070 36 1 2.1412 8.0693 0.8370 37 1 1.8425 7.1621 2.3389 38 1 2.8222 8.6479 2.3761 39 1 4.4234 8.0869 -0.1788 40 1 6.5562 6.6673 1.4806 41 1 5.8560 6.0571 -0.0385 42 1 6.7133 7.9995 -1.2626 43 1 8.0560 7.2419 -0.3679 44 1 10.2278 8.2785 -1.7896 45 1 5.7211 10.2629 -0.0916 46 1 6.5334 10.7154 1.4293 47 1 4.3027 9.5993 1.7935 48 1 5.6571 8.7177 2.5411 49 1 3.3013 1.1995 -2.7178 50 1 1.5491 0.9245 -2.5680 51 1 2.1576 2.4973 -3.1375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997447444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:04 Heat of formation + Delta-G solvation = 24.982154 kcal Electronic energy + Delta-G solvation = -29246.659380 eV Core-core repulsion = 25374.840710 eV Total energy + Delta-G solvation = -3871.818670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -43.71209 -40.89311 -39.34252 -36.80678 -35.37049 -34.54897 -34.29136 -32.61015 -31.84274 -30.49796 -30.15501 -28.32022 -27.16603 -25.23139 -24.49893 -23.87884 -23.56401 -22.00694 -21.71574 -21.06300 -20.30086 -18.72184 -18.20687 -17.52781 -17.36007 -16.96657 -16.80986 -15.92171 -15.80117 -15.44996 -15.33377 -15.23506 -14.89955 -14.79510 -14.74268 -14.32874 -14.23982 -14.00156 -13.70561 -13.58439 -13.42001 -13.22294 -13.20044 -13.05104 -12.72647 -12.66875 -12.49653 -12.39176 -12.21454 -12.06023 -11.98246 -11.81368 -11.71835 -11.49029 -11.37789 -11.12089 -11.01337 -10.52732 -10.26025 -9.95711 -9.93896 -8.67077 -7.87136 -5.31443 0.50898 1.09663 1.44789 1.47964 1.54243 1.55651 2.17898 2.36172 2.51013 3.26514 3.31717 3.60778 3.67795 3.73588 3.91661 3.97189 4.05624 4.16683 4.33788 4.40555 4.42487 4.45006 4.48676 4.53403 4.57065 4.58408 4.64990 4.70467 4.74866 4.79559 4.82262 4.91355 4.98995 5.05017 5.06996 5.10387 5.18091 5.21896 5.28331 5.32131 5.37921 5.38829 5.43152 5.48440 5.56723 5.66158 5.77025 5.86944 6.39613 6.44556 6.89241 7.15415 7.16375 7.88084 8.39219 9.18907 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002511 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.214593 B =11148.249841 C =12162.971634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C 0.026 3.974 4 C -0.203 4.203 5 C -0.043 4.043 6 C 0.601 3.399 7 O -0.573 6.573 8 N -0.700 5.700 9 C 0.152 3.848 10 H 0.067 0.933 11 C -0.154 4.154 12 C -0.072 4.072 13 C -0.118 4.118 14 C 0.180 3.820 15 N -0.612 5.612 16 C -0.262 4.262 17 H 0.066 0.934 18 C -0.053 4.053 19 N -0.935 5.935 20 Si 0.965 3.035 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.141 3.859 25 C -0.114 4.114 26 N -0.276 5.276 27 N -0.275 5.275 28 C 0.071 3.929 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.159 0.841 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.058 0.942 42 H -0.001 1.001 43 H 0.048 0.952 44 H 0.249 0.751 45 H 0.018 0.982 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.051 0.949 49 H 0.099 0.901 50 H 0.126 0.874 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.405 -17.787 -1.967 27.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.099 4.099 4 C -0.232 4.232 5 C -0.201 4.201 6 C 0.387 3.613 7 O -0.451 6.451 8 N -0.350 5.350 9 C 0.048 3.952 10 H 0.085 0.915 11 C -0.212 4.212 12 C -0.091 4.091 13 C -0.157 4.157 14 C 0.054 3.946 15 N -0.336 5.336 16 C -0.392 4.392 17 H 0.083 0.917 18 C -0.248 4.248 19 N -0.581 5.581 20 Si 0.793 3.207 21 H -0.208 1.208 22 H -0.219 1.219 23 H -0.199 1.199 24 C 0.015 3.985 25 C -0.154 4.154 26 N -0.113 5.113 27 N -0.064 5.064 28 C -0.067 4.067 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.177 0.823 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.017 0.983 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.118 0.882 50 H 0.145 0.855 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.067 -17.247 -2.331 27.326 hybrid contribution 1.270 -0.139 0.362 1.328 sum -19.798 -17.386 -1.970 26.421 Atomic orbital electron populations 1.21755 0.93299 1.03284 1.02013 1.20294 0.96838 0.86237 1.05609 1.21902 1.04039 0.98112 0.85836 1.21670 1.08398 0.92487 1.00596 1.21805 1.10627 0.97082 0.90606 1.17159 0.76356 0.81711 0.86067 1.90739 1.55886 1.83815 1.14644 1.45917 1.65144 1.12420 1.11550 1.21022 0.95467 0.84215 0.94485 0.91483 1.22147 0.96284 1.00136 1.02657 1.21196 0.93661 0.95152 0.99134 1.21985 0.96247 0.97870 0.99647 1.20542 0.96369 0.86341 0.91357 1.44335 1.01943 1.19801 1.67487 1.19487 0.84375 1.28998 1.06342 0.91680 1.25782 1.01851 1.02147 0.95066 1.70178 1.31009 1.48519 1.08398 0.85373 0.79983 0.78175 0.77146 1.20802 1.21943 1.19875 1.21079 0.88021 0.93071 0.96291 1.21964 0.99420 0.95903 0.98081 1.73485 1.18926 1.04521 1.14378 1.45793 1.43736 1.07336 1.09559 1.22627 1.06314 1.02599 0.75199 0.93277 0.92689 0.89725 0.88103 0.88320 0.82328 0.75374 0.91310 0.93334 0.89688 0.90545 0.94327 0.92349 0.98252 0.93321 0.94181 0.96356 0.92699 0.88871 0.92979 0.88207 0.85523 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.90 71.98 0.71 -0.31 16 2 C -0.05 -0.42 6.00 29.85 0.18 -0.24 16 3 C 0.03 0.46 6.17 41.40 0.26 0.71 16 4 C -0.20 -4.99 10.73 22.41 0.24 -4.75 16 5 C -0.04 -1.25 7.13 42.45 0.30 -0.95 16 6 C 0.60 19.82 7.79 86.75 0.68 20.50 16 7 O -0.57 -22.09 16.59 -3.96 -0.07 -22.16 16 8 N -0.70 -20.81 4.36 -445.51 -1.94 -22.75 16 9 C 0.15 4.54 2.16 44.99 0.10 4.64 16 10 H 0.07 2.31 7.58 -2.39 -0.02 2.29 16 11 C -0.15 -3.83 9.13 71.98 0.66 -3.17 16 12 C -0.07 -2.35 1.79 -10.76 -0.02 -2.37 16 13 C -0.12 -4.72 5.22 30.67 0.16 -4.56 16 14 C 0.18 8.98 5.31 86.36 0.46 9.43 16 15 N -0.61 -31.61 3.00 -699.08 -2.09 -33.70 16 16 C -0.26 -14.84 9.58 84.03 0.81 -14.04 16 17 H 0.07 3.59 7.89 -2.91 -0.02 3.57 16 18 C -0.05 -3.07 4.91 84.86 0.42 -2.65 16 19 N -0.93 -56.66 11.19 21.65 0.24 -56.42 16 20 Si 0.97 46.21 29.59 68.60 2.03 48.24 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.14 5.84 6.51 86.36 0.56 6.40 16 25 C -0.11 -3.78 5.05 30.67 0.15 -3.63 16 26 N -0.28 -7.08 11.67 -48.18 -0.56 -7.64 16 27 N -0.28 -5.03 3.70 -355.92 -1.32 -6.35 16 28 C 0.07 0.55 10.89 127.77 1.39 1.94 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.10 0.35 7.42 -2.39 -0.02 0.33 16 33 H 0.10 0.72 8.14 -2.38 -0.02 0.71 16 34 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 35 H 0.41 11.35 8.11 -92.71 -0.75 10.59 16 36 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.86 6.40 -2.39 -0.02 1.85 16 39 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 2.17 7.40 -2.38 -0.02 2.15 16 42 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.05 2.78 6.04 -2.39 -0.01 2.77 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 45 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 46 H 0.05 2.23 7.93 -2.38 -0.02 2.21 16 47 H 0.09 2.43 6.36 -2.39 -0.02 2.41 16 48 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 49 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.13 0.14 7.44 -2.38 -0.02 0.12 16 51 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 Total: -1.00 -76.79 404.46 3.51 -73.28 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.16 Total: 20.53 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 7.05 Total: 6.96 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -5.67 Total: -126.86 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.07 Total: -22.16 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -76.79 3.51 -73.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997447444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.265 kcal (2) G-P(sol) polarization free energy of solvation -76.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds