Wall clock time and date at job start Tue Mar 31 2020 18:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 109.47115 * 2 1 4 4 N 1.30449 * 125.98917 * 269.95868 * 3 2 1 5 5 N 1.39932 * 108.89878 * 180.02562 * 4 3 2 6 6 C 1.46503 * 125.75331 * 179.97438 * 5 4 3 7 7 C 1.34256 * 108.49138 * 359.75439 * 5 4 3 8 8 C 1.38044 * 107.41837 * 0.39008 * 7 5 4 9 9 C 1.47424 * 126.41657 * 179.87500 * 8 7 5 10 10 O 1.21609 * 120.00411 * 179.68642 * 9 8 7 11 11 N 1.34777 * 120.00049 * 359.68972 * 9 8 7 12 12 C 1.46500 * 120.00096 * 179.97438 * 11 9 8 13 13 H 1.08993 * 109.47214 * 324.99517 * 12 11 9 14 14 C 1.52998 * 109.47160 * 85.00384 * 12 11 9 15 15 C 1.53000 * 109.47058 * 204.99851 * 12 11 9 16 16 C 1.53040 * 109.46183 * 300.03023 * 15 12 11 17 17 C 1.53199 * 109.31348 * 178.60230 * 16 15 12 18 18 N 1.46925 * 108.76374 * 54.65593 * 17 16 15 19 19 C 1.36934 * 120.63329 * 126.40956 * 18 17 16 20 20 H 1.08005 * 119.99824 * 331.82239 * 19 18 17 21 21 C 1.38809 * 120.00436 * 151.82130 * 19 18 17 22 22 N 1.31625 * 119.99727 * 343.06826 * 21 19 18 23 23 Si 1.86799 * 120.00154 * 163.07497 * 21 19 18 24 24 H 1.48494 * 109.47384 * 90.00085 * 23 21 19 25 25 H 1.48501 * 109.46863 * 210.00032 * 23 21 19 26 26 H 1.48503 * 109.46861 * 329.99574 * 23 21 19 27 27 C 1.46926 * 118.73891 * 306.37914 * 18 17 16 28 28 C 1.53044 * 109.46083 * 179.97438 * 15 12 11 29 29 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46791 * 299.99687 * 1 2 3 31 31 H 1.08994 * 109.47111 * 60.00137 * 1 2 3 32 32 H 1.08998 * 109.47039 * 239.99619 * 2 1 3 33 33 H 1.09008 * 109.47010 * 119.99916 * 2 1 3 34 34 H 1.09003 * 109.46818 * 89.97803 * 6 5 4 35 35 H 1.08995 * 109.47276 * 209.97835 * 6 5 4 36 36 H 1.09004 * 109.47035 * 329.98153 * 6 5 4 37 37 H 1.08008 * 126.29159 * 180.24557 * 7 5 4 38 38 H 0.97000 * 120.00017 * 0.02562 * 11 9 8 39 39 H 1.08999 * 109.47200 * 179.97438 * 14 12 11 40 40 H 1.09005 * 109.46903 * 299.99406 * 14 12 11 41 41 H 1.08993 * 109.47766 * 59.99471 * 14 12 11 42 42 H 1.09007 * 109.46041 * 60.00025 * 15 12 11 43 43 H 1.09004 * 109.49299 * 298.56521 * 16 15 12 44 44 H 1.09000 * 109.49916 * 58.66213 * 16 15 12 45 45 H 1.08995 * 109.59419 * 294.86158 * 17 16 15 46 46 H 1.09002 * 109.70019 * 174.50243 * 17 16 15 47 47 H 0.97000 * 119.99696 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.58890 * 293.83234 * 27 18 17 49 49 H 1.08994 * 109.70628 * 173.47235 * 27 18 17 50 50 H 1.08997 * 109.49565 * 301.33382 * 28 15 12 51 51 H 1.08992 * 109.49842 * 61.43546 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2886 2.1432 -1.0555 5 7 2.7347 3.4042 -0.6443 6 6 3.1252 4.5046 -1.5291 7 6 2.7400 3.4372 0.6979 8 6 2.3090 2.2037 1.1432 9 6 2.1592 1.7839 2.5485 10 8 1.7623 0.6645 2.8098 11 7 2.4621 2.6408 3.5437 12 6 2.3127 2.2239 4.9402 13 1 1.4522 1.5613 5.0314 14 6 3.5751 1.4855 5.3897 15 6 2.1025 3.4571 5.8209 16 6 3.3105 4.3878 5.6920 17 6 3.0810 5.6375 6.5478 18 7 2.7859 5.2195 7.9251 19 6 3.5078 5.7194 8.9758 20 1 4.5301 6.0346 8.8273 21 6 2.9258 5.8210 10.2319 22 7 1.6169 5.7619 10.3575 23 14 4.0001 6.0420 11.7440 24 1 4.2076 7.4905 11.9965 25 1 3.3337 5.4252 12.9191 26 1 5.3130 5.3856 11.5186 27 6 1.7010 4.2554 8.1536 28 6 1.9458 3.0213 7.2796 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 2.2532 5.1203 -1.7498 35 1 3.8849 5.1131 -1.0387 36 1 3.5279 4.0990 -2.4573 37 1 3.0304 4.2741 1.3157 38 1 2.7783 3.5338 3.3353 39 1 3.4642 1.1757 6.4289 40 1 3.7249 0.6068 4.7623 41 1 4.4357 2.1481 5.2984 42 1 1.2031 3.9831 5.5005 43 1 4.2064 3.8706 6.0358 44 1 3.4357 4.6792 4.6491 45 1 2.2392 6.2038 6.1494 46 1 3.9766 6.2588 6.5385 47 1 1.2102 5.8325 11.2353 48 1 0.7466 4.7090 7.8861 49 1 1.6848 3.9623 9.2033 50 1 1.0995 2.3400 7.3668 51 1 2.8546 2.5173 7.6082 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997628788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:27 Heat of formation + Delta-G solvation = 45.415978 kcal Electronic energy + Delta-G solvation = -29498.740624 eV Core-core repulsion = 25627.808031 eV Total energy + Delta-G solvation = -3870.932593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.66450 -39.55508 -37.87777 -35.37935 -34.74085 -32.96576 -32.02123 -31.35619 -30.36325 -29.67095 -28.72404 -27.15906 -25.43909 -24.18874 -23.30014 -22.62626 -22.12956 -20.86993 -20.02491 -19.69052 -18.65461 -17.81623 -16.65229 -16.23593 -15.98709 -15.67728 -14.99386 -14.74426 -14.60116 -14.42547 -14.14258 -14.05463 -13.78308 -13.58786 -13.35003 -13.18225 -13.04255 -12.98300 -12.57768 -12.47428 -12.19980 -12.11350 -11.63196 -11.59764 -11.40113 -11.26060 -11.22111 -10.90766 -10.89890 -10.70039 -10.43383 -10.16468 -10.08805 -9.96004 -9.72972 -9.62117 -9.49106 -9.38427 -9.01220 -8.73533 -8.46442 -6.66183 -5.78923 -3.21298 1.27993 2.00973 2.05661 3.34822 3.36752 3.44168 3.46279 3.47610 4.05028 4.31104 4.49390 4.58128 4.70205 4.90918 4.96760 5.01332 5.14886 5.19309 5.23010 5.30428 5.36227 5.40742 5.43771 5.51211 5.55589 5.70765 5.77043 5.85003 5.90186 6.02775 6.08557 6.13383 6.14570 6.20989 6.30079 6.34094 6.40640 6.45536 6.50029 6.62825 6.66805 6.76268 6.79875 6.83955 6.99199 7.34081 7.39525 7.67320 7.68813 7.79343 8.39409 8.45474 9.21724 9.85409 10.42219 11.29481 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021095 B = 0.002421 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.022534 B =11561.333989 C =12341.451741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.047 4.047 3 C 0.136 3.864 4 N -0.303 5.303 5 N -0.363 5.363 6 C 0.097 3.903 7 C 0.098 3.902 8 C -0.284 4.284 9 C 0.592 3.408 10 O -0.543 6.543 11 N -0.721 5.721 12 C 0.148 3.852 13 H 0.084 0.916 14 C -0.162 4.162 15 C -0.085 4.085 16 C -0.128 4.128 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.252 4.252 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.183 0.817 38 H 0.394 0.606 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.015 0.985 46 H 0.051 0.949 47 H 0.253 0.747 48 H 0.016 0.984 49 H 0.087 0.913 50 H 0.050 0.950 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -5.291 -22.435 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.087 4.087 3 C -0.032 4.032 4 N -0.124 5.124 5 N -0.141 5.141 6 C -0.044 4.044 7 C -0.053 4.053 8 C -0.299 4.299 9 C 0.379 3.621 10 O -0.422 6.422 11 N -0.372 5.372 12 C 0.044 3.956 13 H 0.102 0.898 14 C -0.220 4.220 15 C -0.104 4.104 16 C -0.167 4.167 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.200 0.800 38 H 0.229 0.771 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.586 -5.890 -23.464 24.243 hybrid contribution 0.713 0.946 1.525 1.931 sum 2.299 -4.944 -21.939 22.606 Atomic orbital electron populations 1.21612 0.93993 1.02041 1.01965 1.20115 0.96512 0.88023 1.04015 1.22467 0.95111 0.96884 0.88728 1.77181 1.22105 0.90435 1.22696 1.48296 1.49447 1.11575 1.04750 1.21995 1.01510 0.86188 0.94724 1.23116 0.98074 0.98846 0.85292 1.20343 1.19472 0.95343 0.94787 1.17230 0.76759 0.84675 0.83395 1.90727 1.47124 1.20088 1.84213 1.46071 1.68144 1.16669 1.06333 1.21087 0.98724 0.96737 0.79029 0.89779 1.22222 0.97839 1.00124 1.01789 1.21319 0.98816 0.94301 0.95968 1.22114 0.98024 0.98545 0.98037 1.20876 0.97911 0.92907 0.86389 1.44030 1.39205 1.47583 1.00595 1.19153 0.93504 1.37562 0.87934 0.91840 1.25039 0.95273 1.00594 0.98751 1.70033 1.08152 1.53904 1.22619 0.86331 0.79941 0.77765 0.82933 1.21455 1.21555 1.20512 1.20761 0.89397 0.86263 0.98999 1.22255 1.00779 1.00407 0.93906 0.91914 0.92092 0.93110 0.90823 0.88016 0.90223 0.88971 0.88910 0.80039 0.77092 0.91157 0.92918 0.92293 0.91492 0.91663 0.93997 0.96759 0.93001 0.93648 0.96583 0.89479 0.93143 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.90 37.16 0.37 -1.06 16 2 C -0.05 -0.53 5.97 -27.88 -0.17 -0.70 16 3 C 0.14 1.69 6.52 -82.02 -0.53 1.15 16 4 N -0.30 -3.64 12.50 33.89 0.42 -3.21 16 5 N -0.36 -3.31 3.98 -67.59 -0.27 -3.58 16 6 C 0.10 0.43 11.44 59.85 0.68 1.12 16 7 C 0.10 0.88 10.99 -16.56 -0.18 0.70 16 8 C -0.28 -3.43 6.13 -105.07 -0.64 -4.07 16 9 C 0.59 8.12 7.78 -12.52 -0.10 8.02 16 10 O -0.54 -8.97 14.58 5.27 0.08 -8.89 16 11 N -0.72 -8.84 4.99 -54.88 -0.27 -9.11 16 12 C 0.15 2.07 2.40 -67.93 -0.16 1.90 16 13 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 14 C -0.16 -2.22 8.78 37.16 0.33 -1.90 16 15 C -0.08 -1.31 2.14 -90.58 -0.19 -1.51 16 16 C -0.13 -1.97 4.81 -26.61 -0.13 -2.10 16 17 C 0.15 2.87 6.52 -3.71 -0.02 2.84 16 18 N -0.59 -14.31 2.99 -172.32 -0.52 -14.83 16 19 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 20 H 0.06 1.68 7.89 -52.48 -0.41 1.26 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -25.92 11.19 55.49 0.62 -25.30 16 23 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 28 C -0.13 -2.43 4.97 -26.61 -0.13 -2.56 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.26 6.56 -51.92 -0.34 0.92 16 34 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.18 0.96 7.46 -52.48 -0.39 0.57 16 38 H 0.39 3.96 5.77 -40.82 -0.24 3.72 16 39 H 0.07 0.99 6.46 -51.93 -0.34 0.65 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.79 6.46 -51.93 -0.34 0.45 16 42 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.06 1.06 6.51 -51.93 -0.34 0.72 16 44 H 0.04 0.51 6.46 -51.93 -0.34 0.17 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 50 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.06 1.13 6.51 -51.93 -0.34 0.80 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -33.26 396.94 -8.51 -41.77 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -8.39 Total: 1.93 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.14 Total: -1.15 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.01 Total: -56.04 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.26 -8.51 -41.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997628788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.185 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds